KCC002131A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002131A_C01 KCC002131A_c01
attttggtggtcgtctcttatgactggtgggctgaactaaagctgctcgcaacaccggaa
attttcgacgcttctctgtgTCCTGACGCCCGTCGTGTTGACTATTGAACTGTAGTTAAG
TGCTTGAGATTAAAAAAGGTTGAATCCGGGCAGCTTTGGAGCGGGTCGGCGAGCAGCTCG
CGCCCAAACGCAGCCAGCGAGACTTCCGTCAGCCGGCTGACAGCCTGCCTGCTGGCCGTG
GAGCCGTAAGGCGCTAGTGTTGCTGGGGCGTGCAGTTGACGGTCACCATGGCCCGTCGCG
GTGCGGGTTGCCCGTTGATAGCGTACCGTGGCGACGAGCCGCTACCCGGCTTACAGGAGC
TCTTTAAAAAGGGCGAGCAGAATGTTGAGGTGGTCATCTCGCCAGAGTACATGACGAAAG
ATAACAAGCGGGTCAAGTCGCGGCAGATCTGGGGTGACACGGTGTACACGTCGGACTCGG
ACCTGGTGGCGGTGCTAATGCACATGGGCTTCTATGCACACTACCTCTCGCACCCTCCCA
ACACCGTGGCGGAGTTCCGCGCGCTGCTGAAGCTGCTCCCACCTCAGGAGAAGTACAACT
CCCGCGCGCGGTTCGTCAAGTCGCGGCTGTGGTGCTCACCCGGTGACGGCTGCTCGTACC
AGGTGGAGCGGTGCTGGCTGACGACGCGCACTGGTACCGCCATCGATTTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002131A_C01 KCC002131A_c01
         (713 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC84238.1| unknown protein [Oryza sativa (japonica cultivar...   106  3e-22
ref|NP_196462.2| expressed protein [Arabidopsis thaliana] gi|306...   102  6e-21
emb|CAC08345.1| putative protein [Arabidopsis thaliana]                89  9e-17
ref|NP_588063.1| hypothetical protein [Schizosaccharomyces pombe...    52  9e-06
dbj|BAA99512.1| P0489A01.2 [Oryza sativa (japonica cultivar-group)]    42  0.007

>dbj|BAC84238.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 793

 Score =  106 bits (265), Expect = 3e-22
 Identities = 51/111 (45%), Positives = 75/111 (66%), Gaps = 1/111 (0%)
 Frame = +3

Query: 384 VEVVISPEYMTKDNKRVKSRQIWGDTVYTSDSDLVAVLMHMGFYAHYLSHPPNTVAEFRA 563
           +E+ I  E++T  N++VK  Q+WG  +YT+DSDLVAVLMH G+ +   S PP+ + E RA
Sbjct: 481 LEIRIPAEFVTSTNRQVKGAQLWGTDIYTNDSDLVAVLMHTGYCSPTSSPPPSAIQELRA 540

Query: 564 LLKLLPPQEKYNSRAR-FVKSRLWCSPGDGCSYQVERCWLTTRTGTAIDLQ 713
            +++LPPQ+ Y S  R  V+SR W   G GCS+++ERC +  + G  IDL+
Sbjct: 541 TVRVLPPQDSYTSTLRNNVRSRAW-GAGIGCSFRIERCCIVKKGGGTIDLE 590

>ref|NP_196462.2| expressed protein [Arabidopsis thaliana]
           gi|30682392|ref|NP_851033.1| expressed protein
           [Arabidopsis thaliana] gi|20259547|gb|AAM13893.1|
           unknown protein [Arabidopsis thaliana]
           gi|21689693|gb|AAM67468.1| unknown protein [Arabidopsis
           thaliana]
          Length = 918

 Score =  102 bits (254), Expect = 6e-21
 Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
 Frame = +3

Query: 363 FKKGEQNVEVVISPEYMTKDNKRVKSRQIWGDTVYTSDSDLVAVLMHMGFYAHYLSHPPN 542
           F      +EV I  E++T  N++V+  Q+WG  +YT DSDLVAVLMH G+     S PP 
Sbjct: 595 FANNGPTLEVRIPAEHVTATNRQVRGGQLWGTDIYTDDSDLVAVLMHTGYCRPTASPPPP 654

Query: 543 TVAEFRALLKLLPPQEKYNSRAR-FVKSRLWCSPGDGCSYQVERCWLTTRTGTAIDLQ 713
           T+ E R  +++LP Q+ Y S+ R  V+SR W   G GCSY+VERC++  + G  I+L+
Sbjct: 655 TMQELRTTIRVLPSQDYYTSKLRNNVRSRAW-GAGIGCSYRVERCYILKKGGGTIELE 711

>emb|CAC08345.1| putative protein [Arabidopsis thaliana]
          Length = 917

 Score = 88.6 bits (218), Expect = 9e-17
 Identities = 48/118 (40%), Positives = 70/118 (58%), Gaps = 1/118 (0%)
 Frame = +3

Query: 363 FKKGEQNVEVVISPEYMTKDNKRVKSRQIWGDTVYTSDSDLVAVLMHMGFYAHYLSHPPN 542
           F      +EV I  E++T  N++V+  Q+WG  +YT DSDLVA     G+     S PP 
Sbjct: 615 FANNGPTLEVRIPAEHVTATNRQVRGGQLWGTDIYTDDSDLVA-----GYCRPTASPPPP 669

Query: 543 TVAEFRALLKLLPPQEKYNSRAR-FVKSRLWCSPGDGCSYQVERCWLTTRTGTAIDLQ 713
           T+ E R  +++LP Q+ Y S+ R  V+SR W   G GCSY+VERC++  + G  I+L+
Sbjct: 670 TMQELRTTIRVLPSQDYYTSKLRNNVRSRAW-GAGIGCSYRVERCYILKKGGGTIELE 726

>ref|NP_588063.1| hypothetical protein [Schizosaccharomyces pombe]
           gi|7491786|pir||T40896 hypothetical protein SPCC1259.07
           - fission yeast  (Schizosaccharomyces pombe)
           gi|4049540|emb|CAA22545.1| SPCC1259.07
           [Schizosaccharomyces pombe]
          Length = 351

 Score = 52.0 bits (123), Expect = 9e-06
 Identities = 31/83 (37%), Positives = 45/83 (53%), Gaps = 1/83 (1%)
 Frame = +3

Query: 423 NKRVKSRQIWGDTVYTSDSDLVAVLMHMGFYAHYLSHPPNTVAEFRALLKLLPPQEKY-N 599
           N R+  R+IWG  VYT DSD+  +L H G ++  L  P   +A     L +LPP   Y  
Sbjct: 234 NPRLCRREIWGTDVYTDDSDIATILAHCGCFS--LLKPVRKIAVVD--LYILPPLVHYKG 289

Query: 600 SRARFVKSRLWCSPGDGCSYQVE 668
           +R   ++SR W S  DG S +++
Sbjct: 290 TRKNQIESRSWSSRQDGISLKIK 312

>dbj|BAA99512.1| P0489A01.2 [Oryza sativa (japonica cultivar-group)]
          Length = 1212

 Score = 42.4 bits (98), Expect = 0.007
 Identities = 31/102 (30%), Positives = 38/102 (36%), Gaps = 2/102 (1%)
 Frame = -3

Query: 588 PEVGAASAARGTPPRCW--EGARGSVHRSPCALAPPPGPSPTCTPCHPRSAAT*PACYLS 415
           P   A    R TPP       A      +  A+A PP PSP C  C  R  AT P     
Sbjct: 17  PRDAAPRRRRATPPPSTPRNAAAACQRHAAAAVATPPPPSPPCAQCR-RRHATPP----- 70

Query: 414 SCTLAR*PPQHSARPF*RAPVSRVAARRHGTLSTGNPHRDGP 289
                  PP+H+  P  R   +  A +RH   +   P R  P
Sbjct: 71  -------PPRHTTPPPPRHAAAATAPQRHAAAAVATPPRQPP 105



EST assemble image


clone accession position
1 HC081e03_r AV638070 1 536
2 HCL008c12_r AV639985 214 713




Chlamydomonas reinhardtii
Kazusa DNA Research Institute