KCC002129A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002129A_C01 KCC002129A_c01
agagaactagtctcgagttttttttttttttttttCTGACCTCGTATTACGATTGAAGGG
ACGTTCCAGTCCCTCATTCTGCCATGGTTTTGTTCATCATGTGTACACATCTCTCTCAAA
AGACTCAGCCATGCGACCCTACCAGCGGTCATGGACCATACCAACCACACAAGCGTACCA
TACACAAGGAACACATCCAACACCGCGTGCCCAGGGCGCTCACCTGAACTTTAGTCCCAG
CGCTCGGCCGCTCGCCTCCGGCCCGACCAGCATTTGGGTATACACGACTCGCTCTCCCCA
AAACTGTGAGCTGTAAGAAAATCGCTCAATGCCATGACGCTACGGCGTCATCCCAGTGCC
GGGTGCACCCCCTCATAGTCCTTGCTATCCTTTCTGAGCTGTGTGATCCTCAGTAAGCTT
ACTCCTGTTGGCGCGCCTTCAGGCCCGGCAGAAGCGGGGGCAGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002129A_C01 KCC002129A_c01
         (466 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_327180.1| hypothetical protein [Neurospora crassa] gi|289...    35  0.32
ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus]         34  0.93
ref|ZP_00117459.1| COG3468: Type V secretory pathway, adhesin Ai...    33  1.2
gb|AAC78143.1| 270 kDa ankyrin G isoform [Rattus norvegicus]           33  2.1
ref|ZP_00129081.1| COG0778: Nitroreductase [Desulfovibrio desulf...    32  2.7

>ref|XP_327180.1| hypothetical protein [Neurospora crassa] gi|28920644|gb|EAA30005.1|
           hypothetical protein [Neurospora crassa]
          Length = 585

 Score = 35.4 bits (80), Expect = 0.32
 Identities = 25/64 (39%), Positives = 28/64 (43%)
 Frame = +2

Query: 191 THPTPRAQGAHLNFSPSARPLASGPTSIWVYTTRSPQNCEL*ENRSMP*RYGVIPVPGAP 370
           T PT  A G     SP A         I  YTTRSP +  L   +  P  Y  IP PGAP
Sbjct: 452 TQPTSAAAGT----SPYAPNATRQHPPITAYTTRSPLDNRLQTFKGKPVTYQRIPKPGAP 507

Query: 371 PHSP 382
             +P
Sbjct: 508 DTAP 511

>ref|XP_288846.1| hypothetical protein XP_288846 [Mus musculus]
          Length = 414

 Score = 33.9 bits (76), Expect = 0.93
 Identities = 30/82 (36%), Positives = 34/82 (40%), Gaps = 9/82 (10%)
 Frame = +2

Query: 161 PTTQAYHTQGTHPTPRA---QGAHLNFSPSARPLASGPTSIWVYTTRSPQNCEL*ENRSM 331
           PTTQ  HTQ  H T RA   +G HL   P   P   GPT +   T R         +   
Sbjct: 276 PTTQRAHTQRAH-TQRAHHSEGPHLEGPPLRGPTLRGPT-LREPTLRGSTTQRAHHSEGP 333

Query: 332 P*RYGVIP------VPGAPPHS 379
           P R   IP      VP +P HS
Sbjct: 334 PLRGPTIPQRAATHVPSSPKHS 355

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 19/39 (48%), Positives = 20/39 (50%), Gaps = 3/39 (7%)
 Frame = +2

Query: 161 PTTQAYHTQGTHPTPRA---QGAHLNFSPSARPLASGPT 268
           PTTQ  HTQ  H T RA   +G HL   P   P   GPT
Sbjct: 158 PTTQRAHTQRAH-TQRAHHSEGPHLEGPPLRGPTLRGPT 195

>ref|ZP_00117459.1| COG3468: Type V secretory pathway, adhesin AidA [Cytophaga
            hutchinsonii]
          Length = 3851

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 122  DSAMRPYQRSWTIPTTQAYHTQGTHP-TPRAQGAHLNFSPSARPLASGPTSIWVYTT 289
            DSA      ++TI T  A+ T GT   TP A  A   + PSA  +A+G  ++   TT
Sbjct: 1681 DSAYVQLSATYTIATGVAWTTSGTGSFTPNASTASARYIPSAADIAAGTVTLTATTT 1737

>gb|AAC78143.1| 270 kDa ankyrin G isoform [Rattus norvegicus]
          Length = 2622

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 25/55 (45%), Positives = 28/55 (50%)
 Frame = +2

Query: 134  RPYQRSWTIPTTQAYHTQGTHPTPRAQGAHLNFSPSARPLASGPTSIWVYTTRSP 298
            RPYQ SWT        T  T P P   G+ L+ SPS  P AS   SIW  +T SP
Sbjct: 1502 RPYQ-SWTT-------TPITVPGPAKSGS-LSSSPSNTPSASPLKSIWSVSTPSP 1547

>ref|ZP_00129081.1| COG0778: Nitroreductase [Desulfovibrio desulfuricans G20]
          Length = 262

 Score = 32.3 bits (72), Expect = 2.7
 Identities = 21/65 (32%), Positives = 27/65 (41%)
 Frame = +3

Query: 246 GRSPPARPAFGYTRLALPKTVSCKKIAQCHDATASSQCRVHPLIVLAILSELCDPQ*AYS 425
           G  P    AF   R  + +   C  IA  H+A+ S Q  V   I LA +   C P    +
Sbjct: 150 GTLPEIVEAFENGRDMIHRNAPCLLIAHAHEASLSPQ--VDCAIALASVEVACQPMGLGA 207

Query: 426 CWRAF 440
           CW  F
Sbjct: 208 CWAGF 212



EST assemble image


clone accession position
1 LC037a05_r AV621505 1 466
2 HC080d11_r AV637999 36 427




Chlamydomonas reinhardtii
Kazusa DNA Research Institute