Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002111A_C01 KCC002111A_c01
(503 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA04052.1| nicotinic acetylcholine receptor, alpha1 subunit... 45 4e-04
ref|NP_572474.2| CG10555-PA [Drosophila melanogaster] gi|7290925... 44 9e-04
ref|NP_499703.1| COLlagen structural gene (col-98) [Caenorhabdit... 44 0.001
ref|ZP_00136439.1| COG0642: Signal transduction histidine kinase... 44 0.001
ref|XP_299568.1| hypothetical protein XP_299568 [Homo sapiens] 43 0.002
>emb|CAA04052.1| nicotinic acetylcholine receptor, alpha1 subunit [Locusta
migratoria]
Length = 559
Score = 45.4 bits (106), Expect = 4e-04
Identities = 44/123 (35%), Positives = 48/123 (38%), Gaps = 9/123 (7%)
Frame = -3
Query: 483 GARMREGAGRCGVRAGWLEG*LMRTDFMLQLPPAHCY------PHDDADAVRACTPCPGA 322
G R R G GR G RAG +G +LQ PAH + A A PGA
Sbjct: 363 GLRRRPGRGRRGRRAGAPQG-------LLQRQPAHAHLQGRPLARQPAGRRAAGGQLPGA 415
Query: 321 RPPGRCP---MQAGRQADRQRGATAAAASTAPYPGPPNPSPIPLA*THTGGTPRQPPLQI 151
R GR GR Q ATAAAA+TA PG P G R PP
Sbjct: 416 RAAGRGAGGGAAVGRGGGVQEPATAAAAATASGPGAP---------VAPAGRVRSPPAFP 466
Query: 150 HPR 142
H R
Sbjct: 467 HSR 469
>ref|NP_572474.2| CG10555-PA [Drosophila melanogaster] gi|7290925|gb|AAF46366.1|
CG10555-PA [Drosophila melanogaster]
Length = 926
Score = 44.3 bits (103), Expect = 9e-04
Identities = 44/157 (28%), Positives = 57/157 (36%), Gaps = 26/157 (16%)
Frame = -3
Query: 393 LPPAHCYPHDDADAVRACTPCPGARPPGRCPMQAGRQADRQRGATAAAASTAPYPGPPNP 214
LPP H TP P G M G +Q+ P PG P
Sbjct: 202 LPPPHILQTQAMQQGGQQTP-----PTGPHGMLGGPPQQQQQ------PGQGPVPGQPGQ 250
Query: 213 SPIPLA*THTGGTPRQPPLQIHPRGL------------------------AKQLQQPRVR 106
P + GG P+ PP+Q+ P G +Q QQ + +
Sbjct: 251 GPPQMGMQQHGGDPQGPPVQMPPYGAQQQPQPHPGLPPGAQQQSQQQQQQQQQQQQQQQQ 310
Query: 105 SKQPLASLCSAAAAVSAAAVAAGPSQ--QACGVCPQQ 1
+Q + +AAAA +AAAVAAG Q Q PQQ
Sbjct: 311 QQQQQQAAAAAAAAAAAAAVAAGQQQGPQVSQAGPQQ 347
Score = 31.6 bits (70), Expect = 5.8
Identities = 17/41 (41%), Positives = 26/41 (62%)
Frame = +3
Query: 9 GRRRRPAAKDPQPQQQQTRPPPQNTRKRAAASNAHAAAAAA 131
G +++ + Q QQQQ + Q +++AAA+ A AAAAAA
Sbjct: 289 GAQQQSQQQQQQQQQQQQQQQQQQQQQQAAAAAAAAAAAAA 329
>ref|NP_499703.1| COLlagen structural gene (col-98) [Caenorhabditis elegans]
gi|7499104|pir||T20906 hypothetical protein F14F7.1 -
Caenorhabditis elegans gi|3875920|emb|CAB04111.1| C.
elegans COL-98 protein (corresponding sequence F14F7.1)
[Caenorhabditis elegans]
Length = 305
Score = 43.9 bits (102), Expect = 0.001
Identities = 29/71 (40%), Positives = 33/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 342 CTPCPGARP-PGRCPMQAGRQADRQRGATAAAASTAPYPGPPNPSPIPLA*THTG--GTP 172
C PCPG RP P P + G +D Q G A AP PGPP P A ++G G P
Sbjct: 149 CKPCPGGRPGPPGPPGRPG--SDGQPGRPATGGGAAPRPGPPGPKGPRGAPGNSGRAGAP 206
Query: 171 RQPPLQIHPRG 139
QP H G
Sbjct: 207 GQPGNDAHGYG 217
>ref|ZP_00136439.1| COG0642: Signal transduction histidine kinase [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 703
Score = 43.9 bits (102), Expect = 0.001
Identities = 44/123 (35%), Positives = 51/123 (40%), Gaps = 5/123 (4%)
Frame = -3
Query: 390 PPAHCYPHDDAD-AVRACTPCPGARPPGRCPMQAGRQADRQRGATAAAASTAPYPGPPNP 214
P A P D A R P AR R + QA R GA AS P P P P
Sbjct: 116 PAARSRPADPGTHAHRPGYPAGQARRLRRRRRRLSAQALRTAGAAGPPASPQPAPQRPGP 175
Query: 213 SPIPLA*THTGGTPRQPPLQIH---PRGLAKQLQQPRV-RSKQPLASLCSAAAAVSAAAV 46
+P A G PRQPP Q P + +L+ PRV ++QP A AA A
Sbjct: 176 AP---AGRRPGDGPRQPPGQPRRHAPGAVPHRLEDPRVPDARQPRAGHPRAAGAQRLGRR 232
Query: 45 AAG 37
AAG
Sbjct: 233 AAG 235
>ref|XP_299568.1| hypothetical protein XP_299568 [Homo sapiens]
Length = 229
Score = 43.1 bits (100), Expect = 0.002
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Frame = -3
Query: 387 PAHCYPHDDADAVRACTPCPGARPPGRCPMQAGRQADRQRGATAAAASTAPYPGPPNPSP 208
PA P A + RAC P A P RC + R A R A T P P NPSP
Sbjct: 99 PASALPR--ACSFRACKPLVRAVPKPRCAVLTLRAAPR------TAPDTLPAPLAQNPSP 150
Query: 207 IPLA*THTGGTPRQPPLQIHPRGLAKQLQQPR---VRSKQPLASLCSAAAAVSAAAVAAG 37
+ L H +P P + PR L+ P VR+ P+AS +A+A + A +
Sbjct: 151 LALHALHWECSPH--PERAAPRSLSTLSPAPAAPPVRTALPVASPRAASARLRAITLLTT 208
Query: 36 PSQQ 25
S++
Sbjct: 209 ESEE 212
