KCC002110A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002110A_C01 KCC002110A_c01
gacctggcccaggcgctgacggccaaggagtccattgcgcgcaagaaggccgccatgtcg
ggcgaggtggccaaggcgctGGCCCGCCTCAGCAGCGGGCTGTACGTGGTCACGGCGCAG
CACAACAACGCCCGCTCCGCCATGATCGCCAGCTGGGTGTCGCAGGCCTCCTTCGAGCCG
CTGGGTCTGACCATTGCGGTGGCCAAGGACCGCGCCATCGAGTCCTTGATGCAGGTGGGC
GACTCGTTCGTGCTCAACTGCCTGGGTGAGGACAACTACGCCCCAGTCATGAAGCACTTC
CTGCAGCGCTTCGCGCCCGGCGCGGACCGCTTCGAGGGCGTGGACTGGAGCCCCGCGCCC
ACCACCAACTGCCCGGTGCTGTCGGATGCCATCGCCTACATGGAGTGCCGCGTGGCGTCG
CGCCTGGAGACGCCCGACCACTGGGTCACCTACTGCGAGGTGATCAACGGCAGCGTGACC
AACACCGGCGCCCGCACCGCCGTCCACCGCCGCAAGGTCGCCAACTACTACTAAAGCACA
GCCGTCCACCGCCACTTCCTGACAGTCGTCAACGACCTCAAATCAGCTGAGTTGGTGGGG
CATGAGCGTGTGCTTTGAGGCACAGCCGCGGCTTGGTGCTGCCGCGTGGTTTTGGGTTCC
CGGAAAAGCGCGGGGACTGTGCGTGTGTGGGCTGCTTTTATGAGCGGGCAGCAGCAGCAC
AACCCGCGGCATCTTTGGGAAGGGCAGGCTCTGGCAGATACGCAATGCGCCGAGCTGCCC
AAATGTTTTGTTTTGCATGCGGAGGGAGTGGACAGAAAAATATGAGTGGTTGAGGAATGT
GGTGACGCCCGCCAGACGGGGCGCCCGCCCCGGGGGCATGCGATGGCGGTTTTGCTACAA
GCCGTGCTAGGATGCCTTTTTGCCCGAGTGTATGTGGCGTGGAGAGGCGACCTGCACGGA
GTCGGCGCACCTCGAATGTTGGACCAGCAAGGGCCCGAGCTGAAGCATCGCCATCAGTAC
CGATGTGAGAGGTGTGTGTATTTTGCGGGCAACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002110A_C01 KCC002110A_c01
         (1054 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00105671.1| COG1853: Conserved protein/domain typically a...   207  3e-52
ref|NP_487935.1| probable flavoprotein [Nostoc sp. PCC 7120] gi|...   206  7e-52
ref|NP_898456.1| flavoprotein [Synechococcus sp. WH 8102] gi|336...   201  1e-50
ref|NP_892164.1| flavoprotein [Prochlorococcus marinus subsp. pa...   201  1e-50
ref|ZP_00074702.1| COG1853: Conserved protein/domain typically a...   201  1e-50

>ref|ZP_00105671.1| COG1853: Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family [Nostoc
           punctiforme]
          Length = 574

 Score =  207 bits (526), Expect = 3e-52
 Identities = 106/177 (59%), Positives = 129/177 (71%)
 Frame = +1

Query: 1   DLAQALTAKESIARKKAAMSGEVAKALARLSSGLYVVTAQHNNARSAMIASWVSQASFEP 180
           DLAQ +T   SI   K+ +  ++ KAL RLS GLY++TA+  +  SAM+ASWV+QASF+P
Sbjct: 400 DLAQWVTRDRSIKAMKS-LGADLDKALGRLSGGLYIITAKKGDVSSAMLASWVAQASFKP 458

Query: 181 LGLTIAVAKDRAIESLMQVGDSFVLNCLGEDNYAPVMKHFLQRFAPGADRFEGVDWSPAP 360
           LG +IAVAKDRAIESLMQVGD FVLN L E N+ P+MKHFL+RFAPGADRFEGV   PA 
Sbjct: 459 LGFSIAVAKDRAIESLMQVGDRFVLNILEEGNFQPLMKHFLKRFAPGADRFEGVRTQPA- 517

Query: 361 TTNCPVLSDAIAYMECRVASRLETPDHWVTYCEVINGSVTNTGARTAVHRRKVANYY 531
               P+L+DA+AYMEC V SR++  DHW  Y  V  G V+   A TAVH RKV N+Y
Sbjct: 518 ENGAPILNDALAYMECEVVSRMDCGDHWAVYSNVYAGRVSKPDALTAVHHRKVGNHY 574

>ref|NP_487935.1| probable flavoprotein [Nostoc sp. PCC 7120]
           gi|29336846|sp|Q8YQD8|DFA3_ANASP Putative diflavin
           flavoprotein A 3 gi|25319134|pir||AH2292 hypothetical
           protein all3895 [imported] - Nostoc sp. (strain PCC
           7120) gi|17133029|dbj|BAB75594.1|
           ORF_ID:all3895~probable flavoprotein [Nostoc sp. PCC
           7120]
          Length = 574

 Score =  206 bits (523), Expect = 7e-52
 Identities = 105/177 (59%), Positives = 128/177 (71%)
 Frame = +1

Query: 1   DLAQALTAKESIARKKAAMSGEVAKALARLSSGLYVVTAQHNNARSAMIASWVSQASFEP 180
           DL Q +T   SI   K+ +  ++ KAL RLS GLY++TA+  +  SAM+ASWV+QASF+P
Sbjct: 400 DLGQWVTRDRSIKAMKS-LGADLDKALGRLSGGLYIITAKKGDVSSAMLASWVNQASFKP 458

Query: 181 LGLTIAVAKDRAIESLMQVGDSFVLNCLGEDNYAPVMKHFLQRFAPGADRFEGVDWSPAP 360
           LG +IAVAKDRAIESLMQVGD FVLN L E NY P+M+HFL+RFAPGADRFEGV   PA 
Sbjct: 459 LGFSIAVAKDRAIESLMQVGDRFVLNVLEEGNYQPLMRHFLKRFAPGADRFEGVKTQPA- 517

Query: 361 TTNCPVLSDAIAYMECRVASRLETPDHWVTYCEVINGSVTNTGARTAVHRRKVANYY 531
               P+L DA+AYMEC V SR++  DHW  Y  V  G V+ + A TAVH RKV N+Y
Sbjct: 518 ENGAPILGDALAYMECEVVSRMDCGDHWAVYSTVYAGRVSKSEALTAVHHRKVGNHY 574

>ref|NP_898456.1| flavoprotein [Synechococcus sp. WH 8102]
           gi|33639498|emb|CAE08882.1| flavoprotein [Synechococcus
           sp. WH 8102]
          Length = 582

 Score =  201 bits (512), Expect = 1e-50
 Identities = 104/181 (57%), Positives = 129/181 (70%), Gaps = 4/181 (2%)
 Frame = +1

Query: 1   DLAQALTAKESIARKKAAMSGEVAKALARLSSGLYVVTAQHNNA----RSAMIASWVSQA 168
           DL Q LT +++IA  K+ + G++ KAL R+S GLYVVTA         RSAM+ASWVSQA
Sbjct: 403 DLGQLLTKEKAIAAMKS-LDGDLDKALGRISGGLYVVTASQGEGESQRRSAMVASWVSQA 461

Query: 169 SFEPLGLTIAVAKDRAIESLMQVGDSFVLNCLGEDNYAPVMKHFLQRFAPGADRFEGVDW 348
           SF P GLT+AVAKDRAIE+LMQV D FVLN L EDN+ P+++HFL+RF PGADRF GV+ 
Sbjct: 462 SFSPPGLTVAVAKDRAIEALMQVEDRFVLNVLREDNHQPLLRHFLKRFPPGADRFAGVNV 521

Query: 349 SPAPTTNCPVLSDAIAYMECRVASRLETPDHWVTYCEVINGSVTNTGARTAVHRRKVANY 528
                   PVL+DA+AY+ CRV  R+E PDHW+ Y  V  G+V +  A TAVH RKV N+
Sbjct: 522 LEGVADGGPVLTDALAYLSCRVEQRMEGPDHWIIYAVVEQGNVADAEASTAVHHRKVGNH 581

Query: 529 Y 531
           Y
Sbjct: 582 Y 582

>ref|NP_892164.1| flavoprotein [Prochlorococcus marinus subsp. pastoris str.
           CCMP1378] gi|33633545|emb|CAE18502.1| flavoprotein
           [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
          Length = 591

 Score =  201 bits (512), Expect = 1e-50
 Identities = 104/181 (57%), Positives = 131/181 (71%), Gaps = 4/181 (2%)
 Frame = +1

Query: 1   DLAQALTAKESIARKKAAMSGEVAKALARLSSGLYVVTAQHNNA----RSAMIASWVSQA 168
           DL Q +  K++IA  K+ +   + KAL RLS GLYVVTA         +SAM+ASWVSQA
Sbjct: 412 DLGQLINKKKNIASMKS-LDSNLDKALGRLSGGLYVVTASQGEGSTFRQSAMVASWVSQA 470

Query: 169 SFEPLGLTIAVAKDRAIESLMQVGDSFVLNCLGEDNYAPVMKHFLQRFAPGADRFEGVDW 348
           SF P G+T+AVAKDRAIES MQVG+ FV+N L EDNY  + +HFL+RFAPGADRF  VD 
Sbjct: 471 SFSPPGITVAVAKDRAIESYMQVGEGFVVNILREDNYQKMFRHFLKRFAPGADRFADVDV 530

Query: 349 SPAPTTNCPVLSDAIAYMECRVASRLETPDHWVTYCEVINGSVTNTGARTAVHRRKVANY 528
                   PVLSD++A+++C+V+SRLETPDHW+ Y  V NGSV++   +TAVH RKVAN+
Sbjct: 531 VNNIANGGPVLSDSLAFLDCKVSSRLETPDHWIIYGIVQNGSVSDLSCKTAVHHRKVANH 590

Query: 529 Y 531
           Y
Sbjct: 591 Y 591

>ref|ZP_00074702.1| COG1853: Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family [Trichodesmium
           erythraeum IMS101]
          Length = 575

 Score =  201 bits (512), Expect = 1e-50
 Identities = 103/177 (58%), Positives = 129/177 (72%)
 Frame = +1

Query: 1   DLAQALTAKESIARKKAAMSGEVAKALARLSSGLYVVTAQHNNARSAMIASWVSQASFEP 180
           D  Q L+ KE+I + K+  SG + KAL RLS GLY++TA      SAM+ASWV QASF+P
Sbjct: 401 DAGQLLSIKENIKQMKSLDSG-LDKALGRLSGGLYIITASKGEVSSAMLASWVVQASFKP 459

Query: 181 LGLTIAVAKDRAIESLMQVGDSFVLNCLGEDNYAPVMKHFLQRFAPGADRFEGVDWSPAP 360
           LG++IAVAKDRAIE+LMQVGD FVLN L EDNY  +M+HFL+RF PGADRF GV+   A 
Sbjct: 460 LGVSIAVAKDRAIEALMQVGDRFVLNVLREDNYQYLMRHFLKRFKPGADRFAGVNTQTA- 518

Query: 361 TTNCPVLSDAIAYMECRVASRLETPDHWVTYCEVINGSVTNTGARTAVHRRKVANYY 531
               P+LSDA+AY+EC VA+R+E  DHW+ Y  V NG V+++    AVH RKV N+Y
Sbjct: 519 NNGSPILSDALAYLECEVATRMEASDHWIIYATVDNGRVSDSDVLPAVHHRKVGNHY 575



EST assemble image


clone accession position
1 LC033g01_r AV621272 1 496
2 LC087d03_r AV625063 232 723
3 LC015h02_r AV619982 240 760
4 HC074e10_r AV637553 617 1054




Chlamydomonas reinhardtii
Kazusa DNA Research Institute