KCC002102A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002102A_C01 KCC002102A_c01
caggacgcaGGGCTTCCTGGCGCTGTTCTCGGGCGACACGGGCGAGATCCGCTCCGAGGT
GCGCGAGCAGATCGACGCGAAGGTGGCGGAGTGGCGCGAGGAGGGCAAGGCGGAGATCGT
GCCGGGCGTTCTTTTCATCGACGAGGTGCACATGCTGGACATCGAGTGCTTCTCGTTCCT
CAACAGGGCGCTGGAGAATGATATGGCGCCCATCCTGGTGACCGCCACCAACCGCGGCAT
CACGCGCATCCGCGGCACGCAGTACCGCTCGCCGCACGGTGTGCCCATTGACCTGCTGGA
CCGGCTGCTCATCATTTCCACTGAGCCCTACAGCGAGAAGGAGATCCGCCTCATCCTGGA
CATCAGGTGCGAGGAGGAGGACGTGGAGATGAGCGAGGACGCCAAGGAGCTGCTGACCAA
GATCGGCTTCGAGACCAGCCTGCGCTACTCCATCCAACTCATTACGGCGGCGGCCATCGT
GTGCCAGCGGCGCAAGGGCACAGAGGTGGACATCGAGGACATCAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002102A_C01 KCC002102A_c01
         (526 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9DE27|RUV2_XENLA RuvB-like 2 (Reptin) gi|12004634|gb|AAG4412...   297  6e-80
gb|AAH47966.1| Similar to RuvB-like protein 2 [Xenopus laevis]        296  8e-80
ref|NP_035434.1| RuvB-like protein 2 [Mus musculus] gi|34856079|...   293  7e-79
ref|NP_006657.1| RuvB-like 2; erythrocyte cytosolic protein, 51-...   293  9e-79
ref|NP_777285.1| RuvB-like protein 2 [Danio rerio] gi|34925080|s...   286  9e-77

>sp|Q9DE27|RUV2_XENLA RuvB-like 2 (Reptin) gi|12004634|gb|AAG44126.1|AF218071_1 reptin
           [Xenopus laevis]
          Length = 462

 Score =  297 bits (760), Expect = 6e-80
 Identities = 144/174 (82%), Positives = 164/174 (93%)
 Frame = +2

Query: 2   RTQGFLALFSGDTGEIRSEVREQIDAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 181
           RTQGFLALFSGDTGEI+SEVREQI+AKVAEWREEGKAEI+PGVLFIDEVHMLDIECFSFL
Sbjct: 252 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIECFSFL 311

Query: 182 NRALENDMAPILVTATNRGITRIRGTQYRSPHGVPIDLLDRLLIISTEPYSEKEIRLILD 361
           NRALE+DMAP+L+ ATNRGITRIRGT Y+SPHG+PIDLLDRLLIIST PY+EKE + IL 
Sbjct: 312 NRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILK 371

Query: 362 IRCEEEDVEMSEDAKELLTKIGFETSLRYSIQLITAAAIVCQRRKGTEVDIEDI 523
           IRCEEEDV+MSEDA  +LT+IG ETSLRYS+QLITAA++VC++RKGTEV ++DI
Sbjct: 372 IRCEEEDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDI 425

>gb|AAH47966.1| Similar to RuvB-like protein 2 [Xenopus laevis]
          Length = 462

 Score =  296 bits (759), Expect = 8e-80
 Identities = 144/174 (82%), Positives = 164/174 (93%)
 Frame = +2

Query: 2   RTQGFLALFSGDTGEIRSEVREQIDAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 181
           RTQGFLALFSGDTGEI+SEVREQI+AKVAEWREEGKAEI+PGVLFIDEVHMLDIECFSFL
Sbjct: 252 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIECFSFL 311

Query: 182 NRALENDMAPILVTATNRGITRIRGTQYRSPHGVPIDLLDRLLIISTEPYSEKEIRLILD 361
           NRALE+DMAP+L+ ATNRGITRIRGT Y+SPHG+PIDLLDRLLIIST PY+EKE + IL 
Sbjct: 312 NRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILK 371

Query: 362 IRCEEEDVEMSEDAKELLTKIGFETSLRYSIQLITAAAIVCQRRKGTEVDIEDI 523
           IRCEEEDV+MSEDA  +LT+IG ETSLRYS+QLITAA++VC++RKGTEV ++DI
Sbjct: 372 IRCEEEDVDMSEDACTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDI 425

>ref|NP_035434.1| RuvB-like protein 2 [Mus musculus] gi|34856079|ref|XP_214951.2|
           similar to DNA helicase [Rattus norvegicus]
           gi|30316329|sp|Q9WTM5|RUV2_MOUSE RuvB-like 2 (p47
           protein) gi|4521249|dbj|BAA76297.1| DNA helicase [Mus
           musculus]
          Length = 463

 Score =  293 bits (751), Expect = 7e-79
 Identities = 143/174 (82%), Positives = 163/174 (93%)
 Frame = +2

Query: 2   RTQGFLALFSGDTGEIRSEVREQIDAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 181
           RTQGFLALFSGDTGEI+SEVREQI+AKVAEWREEGKAEI+PGVLFIDEVHMLDIE FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312

Query: 182 NRALENDMAPILVTATNRGITRIRGTQYRSPHGVPIDLLDRLLIISTEPYSEKEIRLILD 361
           NRALE+DMAP+L+ ATNRGITRIRGT Y+SPHG+PIDLLDRLLI+ST PYSEK+ + IL 
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILR 372

Query: 362 IRCEEEDVEMSEDAKELLTKIGFETSLRYSIQLITAAAIVCQRRKGTEVDIEDI 523
           IRCEEEDVEMSEDA  +LT+IG ETSLRY+IQLITAA++VC++RKGTEV ++DI
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDI 426

>ref|NP_006657.1| RuvB-like 2; erythrocyte cytosolic protein, 51-KD; TBP-interacting
           protein, 48-KD; Reptin52 [Homo sapiens]
           gi|28201890|sp|Q9Y230|RUV2_HUMAN RuvB-like 2 (48-kDa
           TATA box-binding protein-interacting protein) (48-kDa
           TBP-interacting protein) (TIP49b) (Repressing pontin 52)
           (Reptin 52) (51 kDa erythrocyte cytosolic protein)
           (ECP-51) (TIP60-associated protein 54-beta) (TAP54-beta)
           (CGI-46) gi|11280157|pir||T46313 hypothetical protein
           DKFZp434K1011.1 - human gi|4587311|dbj|BAA76708.1|
           RuvB-like DNA helicase TIP49b [Homo sapiens]
           gi|5020422|gb|AAD38073.1|AF155138_1 RUVBL2 protein [Homo
           sapiens] gi|5326998|emb|CAB46270.1| erythrocyte
           cytosolic protein of 51 kDa, ECP-51 [Homo sapiens]
           gi|6807657|emb|CAB66677.1| hypothetical protein [Homo
           sapiens] gi|9367027|gb|AAF87087.1|AF124607_1 Reptin52
           [Homo sapiens] gi|12653319|gb|AAH00428.1|AAH00428 RuvB
           (E coli homolog)-like 2 [Homo sapiens]
           gi|13528657|gb|AAH04531.1|AAH04531 RuvB (E coli
           homolog)-like 2 [Homo sapiens]
           gi|22760050|dbj|BAC11048.1| unnamed protein product
           [Homo sapiens]
          Length = 463

 Score =  293 bits (750), Expect = 9e-79
 Identities = 143/174 (82%), Positives = 163/174 (93%)
 Frame = +2

Query: 2   RTQGFLALFSGDTGEIRSEVREQIDAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 181
           RTQGFLALFSGDTGEI+SEVREQI+AKVAEWREEGKAEI+PGVLFIDEVHMLDIE FSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFL 312

Query: 182 NRALENDMAPILVTATNRGITRIRGTQYRSPHGVPIDLLDRLLIISTEPYSEKEIRLILD 361
           NRALE+DMAP+L+ ATNRGITRIRGT Y+SPHG+PIDLLDRLLI+ST PYSEK+ + IL 
Sbjct: 313 NRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILR 372

Query: 362 IRCEEEDVEMSEDAKELLTKIGFETSLRYSIQLITAAAIVCQRRKGTEVDIEDI 523
           IRCEEEDVEMSEDA  +LT+IG ETSLRY+IQLITAA++VC++RKGTEV ++DI
Sbjct: 373 IRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDI 426

>ref|NP_777285.1| RuvB-like protein 2 [Danio rerio] gi|34925080|sp|P83571|RUV2_BRARE
           RuvB-like 2 (Reptin) (zReptin)
           gi|27733814|gb|AAL18005.1| RuvB-like DNA helicase reptin
           [Danio rerio]
          Length = 463

 Score =  286 bits (733), Expect = 9e-77
 Identities = 137/174 (78%), Positives = 162/174 (92%)
 Frame = +2

Query: 2   RTQGFLALFSGDTGEIRSEVREQIDAKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFL 181
           RTQGFLALFSGDTGEI+SEVREQI+AKV+EWREEGKAEI+PGVLFIDEVHMLDIECFSFL
Sbjct: 253 RTQGFLALFSGDTGEIKSEVREQINAKVSEWREEGKAEIIPGVLFIDEVHMLDIECFSFL 312

Query: 182 NRALENDMAPILVTATNRGITRIRGTQYRSPHGVPIDLLDRLLIISTEPYSEKEIRLILD 361
           NRALE+D++P+L+ ATNRGITRIRGT Y+SPHG+PID+LDRLLII+T PY+EKE R IL 
Sbjct: 313 NRALESDLSPVLIMATNRGITRIRGTNYQSPHGIPIDMLDRLLIIATTPYTEKETRQILK 372

Query: 362 IRCEEEDVEMSEDAKELLTKIGFETSLRYSIQLITAAAIVCQRRKGTEVDIEDI 523
           IRCEEEDVE+SE+A  +LT+IG ETSLRY+IQLI+ A +VC++R+GTEV +EDI
Sbjct: 373 IRCEEEDVELSEEAHTVLTRIGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDI 426



EST assemble image


clone accession position
1 LC069b08_r AV623826 1 526
2 HC071f04_r AV637321 10 451




Chlamydomonas reinhardtii
Kazusa DNA Research Institute