Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002100A_C01 KCC002100A_c01
(545 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_823047.1| hypothetical protein [Streptomyces avermitilis ... 45 5e-04
ref|NP_794511.1| type III effector HopPmaI(Pto) [Pseudomonas syr... 45 8e-04
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 42 0.007
pir||S57448 DNA binding protein - rice (fragment) gi|871498|emb|... 41 0.012
gb|AAP06826.1| hypothetical protein [Oryza sativa (japonica cult... 40 0.020
>ref|NP_823047.1| hypothetical protein [Streptomyces avermitilis MA-4680]
gi|29605516|dbj|BAC69582.1| hypothetical protein
[Streptomyces avermitilis MA-4680]
Length = 441
Score = 45.4 bits (106), Expect = 5e-04
Identities = 41/101 (40%), Positives = 47/101 (45%)
Frame = -2
Query: 529 GTARVPRRRP**RPPPRVRT*SHKRPCPPAPPGLA*ARRCGSNRRRRRHQPERRRTAARP 350
GT PRRR R PPR RT +RP PP GL R S R R P RRRT
Sbjct: 40 GTRGRPRRR---RGPPRRRT-RRRRPRPPRR-GLRLLRAARSVRGPR---PRRRRTGRPG 91
Query: 349 PAPRYSRRQACRCWSAIDGTPQGFQIYAAPRLPRP*GQRPL 227
PAPR R RC A P ++ P+ P P G+ P+
Sbjct: 92 PAPRTDRGARWRCARA----PALRRLVGTPKGPGPPGKGPV 128
Score = 33.1 bits (74), Expect = 2.5
Identities = 31/94 (32%), Positives = 37/94 (38%), Gaps = 2/94 (2%)
Frame = -2
Query: 457 RPCPPAP--PGLA*ARRCGSNRRRRRHQPERRRTAARPPAPRYSRRQACRCWSAIDGTPQ 284
RP PA PG A RRRR P RR RP PR +
Sbjct: 24 RPLRPAAARPGTARTAGTRGRPRRRRGPPRRRTRRRRPRPPR-----------------R 66
Query: 283 GFQIYAAPRLPRP*GQRPLRQRPWLFSRPRPSPQ 182
G ++ A R R G RP R+R RP P+P+
Sbjct: 67 GLRLLRAARSVR--GPRPRRRRT---GRPGPAPR 95
>ref|NP_794511.1| type III effector HopPmaI(Pto) [Pseudomonas syringae pv. tomato
str. DC3000] gi|28855145|gb|AAO58206.1| type III
effector HopPmaI(Pto) [Pseudomonas syringae pv. tomato
str. DC3000]
Length = 488
Score = 44.7 bits (104), Expect = 8e-04
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Frame = -2
Query: 541 RPAQGTARVPRRRP**RPPPRVRT*SHKRPCPP--APPGLA*ARRCGSNRRRRRHQPERR 368
RPA G +++ PPR R ++ P PP A P A R G+ ++ R P R
Sbjct: 226 RPASGRPDGAQQQARPETPPRTRPQANSTPPPPPKAEPRPASGRPDGAQQQARPETPPRT 285
Query: 367 RTAAR---PPAPRYSRRQACRCWSAIDGTPQGFQIYAAPRLPRP*GQRPLRQRPWLFSRP 197
R A PP P+ R A G P G Q A P + P R RP S P
Sbjct: 286 RPQANSTPPPPPKAEPRPA-------SGRPDGAQQQARP-------ETPPRTRPQANSAP 331
Query: 196 RPSPQ 182
P P+
Sbjct: 332 PPPPK 336
Score = 32.7 bits (73), Expect = 3.3
Identities = 24/73 (32%), Positives = 34/73 (45%), Gaps = 5/73 (6%)
Frame = -2
Query: 541 RPAQGTARVPRRRP**RPPPRVRT*SHKRPCPP--APPGLA*ARRCGSNRRRRRHQPERR 368
RPA G +++ PPR R ++ P PP A P A R G+ ++ R P R
Sbjct: 302 RPASGRPDGAQQQARPETPPRTRPQANSAPPPPPKAEPRPASGRPDGTQQQARPETPPRT 361
Query: 367 R---TAARPPAPR 338
R +A PP P+
Sbjct: 362 RPQANSAPPPPPK 374
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 41.6 bits (96), Expect = 0.007
Identities = 58/178 (32%), Positives = 68/178 (37%), Gaps = 20/178 (11%)
Frame = -2
Query: 544 RRPAQGTARV-PRRRP**RPPPRVRT*SHKRPCPPAPPGL-----A*ARRCGSNRRRR-- 389
RRP G A PRR RP R H+R PA G A RR G RRRR
Sbjct: 65 RRPRGGAALPGPRRGGRRRPAAR-----HRRDRRPAVAGRGPGRPARLRRRGPRRRRRLC 119
Query: 388 -------RH---QPERRRTAARPPAPRYSRRQACRCWSAIDG--TPQGFQIYAAPRLPRP 245
RH +P RRT R P R++ R A G G + AA R RP
Sbjct: 120 PRPRRTPRHRAARPRLRRTGPRRQRPHPHRQRPGRRTPARPGHRGRGGPAVAAAARRGRP 179
Query: 244 *GQRPLRQRPWLFSRPRPSPQPLSILAVRTQP*IRAERSAVVWHTKLPHAEKRAPKAL 71
QRP P RPRP+ A +RA R A + P +R + L
Sbjct: 180 GHQRPAAPHP---HRPRPAAARARRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRL 234
Score = 33.1 bits (74), Expect = 2.5
Identities = 32/95 (33%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Frame = -2
Query: 463 HKRPCPPAP----PGLA*ARRCGSN-----RRRRRHQPERRRTAARPPAPRYSRRQACRC 311
H+RP P P P A ARR R RRR RRR ARP P R+ R
Sbjct: 181 HQRPAAPHPHRPRPAAARARRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTPRP 240
Query: 310 WS------AIDGTPQGFQIYAAPRLPRP*GQRPLR 224
+ + G G A R P P RP+R
Sbjct: 241 HARGSGQGRVAGRRSGAPGAAGRRQPLPGRPRPVR 275
>pir||S57448 DNA binding protein - rice (fragment) gi|871498|emb|CAA61277.1| DNA
binding protein [Oryza sativa (indica cultivar-group)]
Length = 112
Score = 40.8 bits (94), Expect = 0.012
Identities = 40/128 (31%), Positives = 50/128 (38%), Gaps = 12/128 (9%)
Frame = -2
Query: 538 PAQGTARVPRRRP**-RPPPRVRT*SHKRPCPPAPPGLA*ARRCGSNRRRRRHQPERRRT 362
P +G R P+ RP RP P RT RP P RRC R RR +P R
Sbjct: 10 PKRGRGRPPKVRPRATRPYPPRRT----RPRP---------RRCAGRRLRRCRRPRRAAP 56
Query: 361 AARPPAPRYSRRQACRCWSAIDGTPQGFQIYAAPRLPRP*G---QRPLRQ--------RP 215
RPP PR +A P++PRP G + PL + RP
Sbjct: 57 RGRPPKPR--------------------DPHAPPKIPRPRGRPRKNPLPEGMVPPPPTRP 96
Query: 214 WLFSRPRP 191
++PRP
Sbjct: 97 GATAKPRP 104
>gb|AAP06826.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 297
Score = 40.0 bits (92), Expect = 0.020
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Frame = +3
Query: 180 GCGEGRGREKSQGRWRKGRWP*GRGSRGAA*I*KP*GVPSMADQHLHACRLL*RGAGGRA 359
G G GR + R R GRG+RG A GV S ++ R G G R
Sbjct: 33 GVAHGGGRRTAASRRRPRGGGCGRGARGRA---ADSGVASTTERRRLRTRRTGAGGGRRT 89
Query: 360 AVLRR---SG*CRLLRRLEPHRRAHARPGGAGGHGLLCDHVRTRGGGR 494
RR G C L RRL R+ GG G G C GGGR
Sbjct: 90 GASRRRPSGGSCGLRRRLRARRKG---TGGGGDCGGGCRRYWVSGGGR 134
