KCC002088A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002088A_C01 KCC002088A_c01
cccccttcccaacGGTCATACTAGCAAACTCTTAGTGGGCCTGCGCCCCCGCCACGCCTG
GAAAAATGGGGGAGAACTACCTCAACTCGCCTATCAGCCTTATTAGCAAGTCCGATATCC
GCTATGAGGGCATCCTGTATAACATCAACATGGAGGAGAGCAGCATTGCGCTGGCTCAGG
TTCGGTCTTTCGGGACGGAGGGCCGGCGCGTGGGCGGCCCGCAGGTGCCGCCCAGCAACG
AGGTGTATGACTACATCATCTTCAAGGGTGATGATATGAAGGACCTGACGGTGCTGGGAC
CGCCGGGCTCCGCACCGGGAGGTGCGCCAGCGCCTCCGCCTGTGCCGGAGCAGTCCACGA
ACCCGTGGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002088A_C01 KCC002088A_c01
         (371 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG50526.1|AC084221_8 unknown protein [Arabidopsis thaliana]       113  6e-25
gb|AAK32845.1|AF361833_1 At1g26110/F28B23_21 [Arabidopsis thalia...   113  6e-25
ref|NP_564239.1| expressed protein [Arabidopsis thaliana] gi|254...   113  6e-25
dbj|BAB41197.1| hypothetical protein [Glycine max]                    105  1e-22
gb|AAH40823.1| 9430078B04 protein [Mus musculus]                      102  1e-21

>gb|AAG50526.1|AC084221_8 unknown protein [Arabidopsis thaliana]
          Length = 643

 Score =  113 bits (283), Expect = 6e-25
 Identities = 60/109 (55%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
 Frame = +3

Query: 72  ENYLNSPISLISKSDIRYEGILYNINMEESSIALAQVRSFGTEGRRVGGPQVPPSNEVYD 251
           ++Y+ S ISL SKS+IRYEGILYNIN +ESSI L  VRSFGTEGR+  GPQVPPS++VY+
Sbjct: 15  DSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYE 74

Query: 252 YIIFKGDDMKDLTV-----LGPPGSAPGGAPA------PPPVPEQSTNP 365
           YI+F+G D+KDL V     + PP S     PA      P P+P   + P
Sbjct: 75  YILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLP 123

>gb|AAK32845.1|AF361833_1 At1g26110/F28B23_21 [Arabidopsis thaliana]
           gi|18700276|gb|AAL77748.1| At1g26110/F28B23_21
           [Arabidopsis thaliana]
          Length = 611

 Score =  113 bits (283), Expect = 6e-25
 Identities = 60/109 (55%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
 Frame = +3

Query: 72  ENYLNSPISLISKSDIRYEGILYNINMEESSIALAQVRSFGTEGRRVGGPQVPPSNEVYD 251
           ++Y+ S ISL SKS+IRYEGILYNIN +ESSI L  VRSFGTEGR+  GPQVPPS++VY+
Sbjct: 15  DSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYE 74

Query: 252 YIIFKGDDMKDLTV-----LGPPGSAPGGAPA------PPPVPEQSTNP 365
           YI+F+G D+KDL V     + PP S     PA      P P+P   + P
Sbjct: 75  YILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLP 123

>ref|NP_564239.1| expressed protein [Arabidopsis thaliana] gi|25403030|pir||B86387
           unknown protein [imported] - Arabidopsis thaliana
           gi|12321169|gb|AAG50671.1|AC079829_4 unknown protein
           [Arabidopsis thaliana]
          Length = 611

 Score =  113 bits (283), Expect = 6e-25
 Identities = 60/109 (55%), Positives = 75/109 (68%), Gaps = 11/109 (10%)
 Frame = +3

Query: 72  ENYLNSPISLISKSDIRYEGILYNINMEESSIALAQVRSFGTEGRRVGGPQVPPSNEVYD 251
           ++Y+ S ISL SKS+IRYEGILYNIN +ESSI L  VRSFGTEGR+  GPQVPPS++VY+
Sbjct: 15  DSYVGSLISLTSKSEIRYEGILYNINTDESSIGLQNVRSFGTEGRKKDGPQVPPSDKVYE 74

Query: 252 YIIFKGDDMKDLTV-----LGPPGSAPGGAPA------PPPVPEQSTNP 365
           YI+F+G D+KDL V     + PP S     PA      P P+P   + P
Sbjct: 75  YILFRGTDIKDLQVKASPPVQPPASTINNDPAIIQSHYPSPMPTSGSLP 123

>dbj|BAB41197.1| hypothetical protein [Glycine max]
          Length = 620

 Score =  105 bits (263), Expect = 1e-22
 Identities = 54/98 (55%), Positives = 67/98 (68%)
 Frame = +3

Query: 72  ENYLNSPISLISKSDIRYEGILYNINMEESSIALAQVRSFGTEGRRVGGPQVPPSNEVYD 251
           ++Y+ S ISL SKS+IRYEGILYNIN EESSI L  VRSFGTEGR+  G Q+PP +++Y+
Sbjct: 14  DSYIGSLISLTSKSEIRYEGILYNINTEESSIGLRNVRSFGTEGRKKDGLQIPPGDKIYE 73

Query: 252 YIIFKGDDMKDLTVLGPPGSAPGGAPAPPPVPEQSTNP 365
           YI+F+G D+KDL V   P   P       P   QS  P
Sbjct: 74  YILFRGTDIKDLQVKSSPPVQPTPQVNNDPAIIQSHYP 111

>gb|AAH40823.1| 9430078B04 protein [Mus musculus]
          Length = 451

 Score =  102 bits (255), Expect = 1e-21
 Identities = 56/106 (52%), Positives = 69/106 (64%)
 Frame = +3

Query: 39  ACAPATPGKMGENYLNSPISLISKSDIRYEGILYNINMEESSIALAQVRSFGTEGRRVGG 218
           A A A  G  G  YL S ISLISK+ IRYEGILY I+ + S++ALA+VRSFGTE R    
Sbjct: 62  APAAAMSGSSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDR 121

Query: 219 PQVPPSNEVYDYIIFKGDDMKDLTVLGPPGSAPGGAPAPPPVPEQS 356
           P  PP  E+Y+YIIF+G D+KD+TV  PP  A    P  P + + S
Sbjct: 122 P-APPREEIYEYIIFRGSDIKDITVCEPP-KAQHTLPQDPAIVQSS 165



EST assemble image


clone accession position
1 LCL025d02_r AV627346 1 379
2 HC066h06_r AV636972 14 220
3 MXL036a01_r BP095110 21 176




Chlamydomonas reinhardtii
Kazusa DNA Research Institute