KCC002079A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002079A_C01 KCC002079A_c01
cgggcttcctgggccgccatgtgGTGCAGCAGCTGCTGGACAGCGGCAAGTACGAGGTGA
CGGTGTTTGACGTGCGGCCGCTGGAGTCGCCGCGGCCGCATGCCAGCGTCGTGGGTGACC
TGCGCAAGCCGGCGGACGTGGCGGCGGCGGTGGAGGGCATGGATGTGGTGTTCCACATCG
CCACCGCTGCGCCCACGGGCGAGAACGCGCTCAACATCGCGCTGATGAATGGCGTCAACG
TGGACGGCACGCGGCACCTGCTGGAGGCCTGCCTGGCGGCGGGCGTGGGCAAGGTGGTGT
ACACCAGCTCGGCGTCCGTGGTGTTTGATGGCAAGGCGCTGGTCATGGCGGACGAGGCGG
CCACGCCCTACGCCGCCCGCCCCATGGACCACTACACGCGCACCAAGATCCTGGGCGAGC
AGATGGTGCTCGAGTACAACGGCAAGCCGCTGGCCAAGCCTGCGGCCGCCTCCGGCGCCA
CCACCTTGGCCACCGTGGCGCTGCGCCCCAGCGGCATCTTCGGCGAGGGAGATGCCGTGT
TCGTGCCCACGCTGGCGCGCAACGCCCGCGCCGGCAAGATGAAGTACATCCTGGGCTCGG
GGCGCAACGAGTGCGATTTCACCTACGCCGGCAACGTGGCGCACGCGCATCTGCTGGCAG
CGGCGGCGCTGGAGCCGGGCGCAGCGCTGGCGGGCAAGCCCTACTTCGTCACCAATGATG
AGCCCAAGCGCTTCTGGGACATGATGGGCGACATGTGTGCTGGCCTGGGCTACGGCCGGC
CGCGCATCCACCTGCCCTTCCTGCTGGTGATTGTGCTGGCCGCCATCTTCGAGTACCTGG
TTCTGCCACTGGTCAAGGCGCTGGGCAAGGAGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002079A_C01 KCC002079A_c01
         (874 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH52834.1| NAD(P) dependent steroid dehydrogenase-like [Mus ...   207  2e-52
ref|NP_035071.3| NAD(P) dependent steroid dehydrogenase-like; ba...   206  4e-52
ref|XP_219730.2| similar to putative NAD(P)H steroid dehydrogena...   206  4e-52
gb|AAH19945.1| NAD(P) dependent steroid dehydrogenase-like [Mus ...   206  4e-52
ref|NP_057006.1| NAD(P) dependent steroid dehydrogenase-like [Ho...   202  8e-51

>gb|AAH52834.1| NAD(P) dependent steroid dehydrogenase-like [Mus musculus]
          Length = 362

 Score =  207 bits (527), Expect = 2e-52
 Identities = 121/289 (41%), Positives = 166/289 (56%), Gaps = 4/289 (1%)
 Frame = +3

Query: 3   GFLGRHVVQQLLDSGKYEVTVFDVRP-LESPRPHASVVGDLRKPADVAAAVEGMDVVFHI 179
           GFLG+H+V+QLL+ G Y V VFD+    ++PR     +GDL    D+  A++G+ +VFH 
Sbjct: 36  GFLGQHMVEQLLERG-YTVNVFDIHQGFDNPRVQF-FIGDLCNQQDLYPALKGVSIVFHC 93

Query: 180 ATAAPTGENALNIALMNGVNVDGTRHLLEACLAAGVGKVVYTSSASVVFDGKALVMADEA 359
           A+  P   N     L   VN  GT+ ++E C  AGV K++ TSSASVVF+G  +    E 
Sbjct: 94  ASPPPYSNNK---ELFYRVNFIGTKTVIETCREAGVQKLILTSSASVVFEGVDIKNGTED 150

Query: 360 ATPYAARPMDHYTRTKILGEQMVLEYNGKPLAKPAAASGATTLATVALRPSGIFGEGDAV 539
             PYA +P+D+YT TKIL E+ VL+ N                 T A+RP GIFG  D  
Sbjct: 151 L-PYAMKPIDYYTETKILQERAVLDANDPK----------KNFLTAAIRPHGIFGPRDPQ 199

Query: 540 FVPTLARNARAGKMKYILGSGRNECDFTYAGNVAHAHLLAAAALEPGAALAGKPYFVTND 719
            VP L   AR GKMK+++G+G N  DFT+  NV H H+LAA  L   AAL GK + +TND
Sbjct: 200 LVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALGGKAFHITND 259

Query: 720 EPKRFWDMMGDMCAGLGYGRPRIHLPFLLVIVLAAIFEYLVL---PLVK 857
           EP  FW  +  +  GL Y  P+ H+P+ +   LA +   LV+   PL++
Sbjct: 260 EPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308

>ref|NP_035071.3| NAD(P) dependent steroid dehydrogenase-like; bare patches; striated
           [Mus musculus] gi|8473695|sp|Q9R1J0|NSDL_MOUSE
           NAD(P)-dependent steroid dehydrogenase
           gi|5052206|gb|AAD38448.1|AF100198_1 putative NAD(P)H
           steroid dehydrogenase [Mus musculus]
           gi|7619723|emb|CAA15948.2| NAD(P)H steroid dehydrogenase
           [Mus musculus]
          Length = 362

 Score =  206 bits (524), Expect = 4e-52
 Identities = 121/289 (41%), Positives = 165/289 (56%), Gaps = 4/289 (1%)
 Frame = +3

Query: 3   GFLGRHVVQQLLDSGKYEVTVFDVRP-LESPRPHASVVGDLRKPADVAAAVEGMDVVFHI 179
           GFLG+H+V+QLL+ G Y V VFD+    ++PR     +GDL    D+  A++G+  VFH 
Sbjct: 36  GFLGQHMVEQLLERG-YTVNVFDIHQGFDNPRVQF-FIGDLCNQQDLYPALKGVSTVFHC 93

Query: 180 ATAAPTGENALNIALMNGVNVDGTRHLLEACLAAGVGKVVYTSSASVVFDGKALVMADEA 359
           A+  P   N     L   VN  GT+ ++E C  AGV K++ TSSASVVF+G  +    E 
Sbjct: 94  ASPPPYSNNK---ELFYRVNFIGTKTVIETCREAGVQKLILTSSASVVFEGVDIKNGTED 150

Query: 360 ATPYAARPMDHYTRTKILGEQMVLEYNGKPLAKPAAASGATTLATVALRPSGIFGEGDAV 539
             PYA +P+D+YT TKIL E+ VL+ N                 T A+RP GIFG  D  
Sbjct: 151 L-PYAMKPIDYYTETKILQERAVLDANDPK----------KNFLTAAIRPHGIFGPRDPQ 199

Query: 540 FVPTLARNARAGKMKYILGSGRNECDFTYAGNVAHAHLLAAAALEPGAALAGKPYFVTND 719
            VP L   AR GKMK+++G+G N  DFT+  NV H H+LAA  L   AAL GK + +TND
Sbjct: 200 LVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALGGKAFHITND 259

Query: 720 EPKRFWDMMGDMCAGLGYGRPRIHLPFLLVIVLAAIFEYLVL---PLVK 857
           EP  FW  +  +  GL Y  P+ H+P+ +   LA +   LV+   PL++
Sbjct: 260 EPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308

>ref|XP_219730.2| similar to putative NAD(P)H steroid dehydrogenase [Rattus
           norvegicus]
          Length = 362

 Score =  206 bits (524), Expect = 4e-52
 Identities = 121/284 (42%), Positives = 163/284 (56%), Gaps = 1/284 (0%)
 Frame = +3

Query: 3   GFLGRHVVQQLLDSGKYEVTVFDVRP-LESPRPHASVVGDLRKPADVAAAVEGMDVVFHI 179
           GFLG+H+V+QLL  G Y V VFDVR   ++PR     +GDL    D+  A++G+  VFH 
Sbjct: 36  GFLGQHMVEQLLSRG-YAVNVFDVRQGFDNPRVQF-FIGDLCNQQDLYPALKGVSTVFHC 93

Query: 180 ATAAPTGENALNIALMNGVNVDGTRHLLEACLAAGVGKVVYTSSASVVFDGKALVMADEA 359
           A+      N+ N  L   VN  GT+ ++E C  AGV K++ TSSASVVF+G  +    E 
Sbjct: 94  ASPP---SNSNNKELFYRVNSTGTKTVIETCKEAGVQKLILTSSASVVFEGVDIKNGTED 150

Query: 360 ATPYAARPMDHYTRTKILGEQMVLEYNGKPLAKPAAASGATTLATVALRPSGIFGEGDAV 539
             PYA +P+D+YT TKIL E+ VL+ N                 T A+RP GIFG  D  
Sbjct: 151 L-PYAMKPIDYYTETKILQERAVLDANDPK----------KNFLTAAIRPHGIFGPRDPQ 199

Query: 540 FVPTLARNARAGKMKYILGSGRNECDFTYAGNVAHAHLLAAAALEPGAALAGKPYFVTND 719
            VP L   AR GKMK+++G+G+N  DFT+  NV H H+LAA  L   A L GK + +TND
Sbjct: 200 LVPVLIDAARKGKMKFMIGNGKNLVDFTFVENVVHGHILAAEHLSRDAGLGGKAFHITND 259

Query: 720 EPKRFWDMMGDMCAGLGYGRPRIHLPFLLVIVLAAIFEYLVLPL 851
           EP  FW  +  +  GL Y  P+ H+P+ +   LA +   LV+ L
Sbjct: 260 EPIPFWTFLSRILTGLNYEAPKYHIPYRVAYYLAFLLSLLVMVL 303

>gb|AAH19945.1| NAD(P) dependent steroid dehydrogenase-like [Mus musculus]
          Length = 362

 Score =  206 bits (524), Expect = 4e-52
 Identities = 121/289 (41%), Positives = 165/289 (56%), Gaps = 4/289 (1%)
 Frame = +3

Query: 3   GFLGRHVVQQLLDSGKYEVTVFDVRP-LESPRPHASVVGDLRKPADVAAAVEGMDVVFHI 179
           GFLG+H+V+QLL+ G Y V VFD+    ++PR     +GDL    D+  A++G+  VFH 
Sbjct: 36  GFLGQHMVEQLLERG-YTVNVFDIHQGFDNPRVQF-FIGDLCNQQDLYPALKGVSTVFHC 93

Query: 180 ATAAPTGENALNIALMNGVNVDGTRHLLEACLAAGVGKVVYTSSASVVFDGKALVMADEA 359
           A+  P   N     L   VN  GT+ ++E C  AGV K++ TSSASVVF+G  +    E 
Sbjct: 94  ASPPPYSNNK---ELFYRVNFIGTKTVIETCREAGVQKLILTSSASVVFEGVDIKNGTED 150

Query: 360 ATPYAARPMDHYTRTKILGEQMVLEYNGKPLAKPAAASGATTLATVALRPSGIFGEGDAV 539
             PYA +P+D+YT TKIL E+ VL+ N                 T A+RP GIFG  D  
Sbjct: 151 L-PYAMKPIDYYTETKILQERAVLDANDPK----------KNFLTAAIRPHGIFGPRDPQ 199

Query: 540 FVPTLARNARAGKMKYILGSGRNECDFTYAGNVAHAHLLAAAALEPGAALAGKPYFVTND 719
            VP L   AR GKMK+++G+G N  DFT+  NV H H+LAA  L   AAL GK + +TND
Sbjct: 200 LVPILIDAARKGKMKFMIGNGENLVDFTFVENVVHGHILAAEHLSQDAALGGKAFHITND 259

Query: 720 EPKRFWDMMGDMCAGLGYGRPRIHLPFLLVIVLAAIFEYLVL---PLVK 857
           EP  FW  +  +  GL Y  P+ H+P+ +   LA +   LV+   PL++
Sbjct: 260 EPIPFWTFLSRILTGLNYEAPKYHIPYWMAYYLAFLLSLLVMVVSPLIQ 308

>ref|NP_057006.1| NAD(P) dependent steroid dehydrogenase-like [Homo sapiens]
           gi|8488997|sp|Q15738|NSDL_HUMAN NAD(P)-dependent steroid
           dehydrogenase (H105e3 protein) gi|4457237|gb|AAC50558.2|
           H105e3 [Homo sapiens] gi|12652969|gb|AAH00245.1| NAD(P)
           dependent steroid dehydrogenase-like [Homo sapiens]
           gi|14043700|gb|AAH07816.1| NAD(P) dependent steroid
           dehydrogenase-like [Homo sapiens]
          Length = 373

 Score =  202 bits (513), Expect = 8e-51
 Identities = 115/282 (40%), Positives = 163/282 (57%), Gaps = 1/282 (0%)
 Frame = +3

Query: 3   GFLGRHVVQQLLDSGKYEVTVFDVRP-LESPRPHASVVGDLRKPADVAAAVEGMDVVFHI 179
           GFLG+H+V+QLL  G Y V VFD++   ++P+     +GDL    D+  A++G++ VFH 
Sbjct: 47  GFLGQHMVEQLLARG-YAVNVFDIQQGFDNPQVRF-FLGDLCSRQDLYPALKGVNTVFHC 104

Query: 180 ATAAPTGENALNIALMNGVNVDGTRHLLEACLAAGVGKVVYTSSASVVFDGKALVMADEA 359
           A+  P+  N     L   VN  GT++++E C  AGV K++ TSSASV+F+G  +    E 
Sbjct: 105 ASPPPSSNNK---ELFYRVNYIGTKNVIETCKEAGVQKLILTSSASVIFEGVDIKNGTED 161

Query: 360 ATPYAARPMDHYTRTKILGEQMVLEYNGKPLAKPAAASGATTLATVALRPSGIFGEGDAV 539
             PYA +P+D+YT TKIL E+ VL  N                 T A+RP GIFG  D  
Sbjct: 162 L-PYAMKPIDYYTETKILQERAVLGANDPE----------KNFLTTAIRPHGIFGPRDPQ 210

Query: 540 FVPTLARNARAGKMKYILGSGRNECDFTYAGNVAHAHLLAAAALEPGAALAGKPYFVTND 719
            VP L   AR GKMK+++G+G+N  DFT+  NV H H+LAA  L   + L GK + +TND
Sbjct: 211 LVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSRDSTLGGKAFHITND 270

Query: 720 EPKRFWDMMGDMCAGLGYGRPRIHLPFLLVIVLAAIFEYLVL 845
           EP  FW  +  +  GL Y  P+ H+P+ +   LA +   LV+
Sbjct: 271 EPIPFWTFLSRILTGLNYEAPKYHIPYWVAYYLALLLSLLVM 312



EST assemble image


clone accession position
1 HCL056c05_r AV642700 1 525
2 HC062d04_r AV636649 24 402
3 HCL066c07_r AV643243 397 874




Chlamydomonas reinhardtii
Kazusa DNA Research Institute