KCC002078A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002078A_C01 KCC002078A_c01
CACAACCCATGCCCTCAGGTTGACGCCTTCAATCGCTCCTACACGCTACAGTCAAACTTT
GCGAAATTGGCAAAGCCCGCGCGGCATTTGTTGCATTCGACGGCAGAATGCTTGCGCGCT
GCATGAGCATGGCTAGCACGACTGTCCGCGGCCATCTAGTCCGTGGCAGCTCTGGCTCGC
TCAGCGCCAGCGTCGCGCGCGGCACTGGAGCTGTGCGCGTTATGGCGTGGGAATGGAACC
CCTTTGCTGGCGACCAGCAGGCGCGCGATGCCTCTATTAAGGCCAAGATGGCAGAGGCCA
ACAAGGCGCTGGAGCATGACAAGATGCTGTGCTACCAGTGCGAGCAGACCAAGAGCGGCA
CCGGCTGCACCGAGATTGGCGTGTGCGGCAAGACCCCCGAGGTCGCTGGGCTGCAGGACC
TGCTAGTGTACTCCGTGAAGGGCCTGGCCTCCCTGGCCCACATCGCTCGCAACTCTCCCG
CCAAAATCGAGGACCCGGCCGTCAACACCTTCATCAACGGCGCCATCTTCTCCACCCTGA
CCAACGTCAACTTTGCCGATGACCGCTTCCTGGAGTTTGTGTCTGAGGCCCGTGCCCACC
ACGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002078A_C01 KCC002078A_c01
         (606 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_228977.1| prismane protein [Thermotoga maritima] gi|73880...    97  2e-19
ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp...    94  2e-18
ref|ZP_00144608.1| Hydroxylamine reductase [Fusobacterium nuclea...    91  1e-17
ref|ZP_00129319.1| COG1151: 6Fe-6S prismane cluster-containing p...    89  5e-17
sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster prot...    86  4e-16

>ref|NP_228977.1| prismane protein [Thermotoga maritima]
           gi|7388023|sp|Q9X0Q4|HCP_THEMA Hydroxylamine reductase
           (Hybrid-cluster protein) (HCP) gi|7430816|pir||G72285
           hybrid cluster [4Fe-2S-3O] protein TM1172 [similarity] -
           Thermotoga maritima (strain MSB8)
           gi|4981721|gb|AAD36247.1|AE001774_4 prismane protein
           [Thermotoga maritima]
          Length = 431

 Score = 97.1 bits (240), Expect = 2e-19
 Identities = 46/90 (51%), Positives = 64/90 (71%)
 Frame = +3

Query: 321 KMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIARNSPAKIEDPA 500
           +M CYQC QT +GTGCTE GVCGK+P VA LQD LV+++KG+++  + AR      +DP 
Sbjct: 2   QMFCYQCSQTANGTGCTEYGVCGKSPTVARLQDNLVFAIKGISAYYYHARE--LGYDDPE 59

Query: 501 VNTFINGAIFSTLTNVNFADDRFLEFVSEA 590
           +  F++ A++STLTNVNF    F+E+  EA
Sbjct: 60  IAGFLDEALYSTLTNVNFDAQSFVEYALEA 89

>ref|NP_603581.1| Prismane protein [Fusobacterium nucleatum subsp. nucleatum ATCC
           25586] gi|23821957|sp|Q8RFL1|HCP_FUSNN Hydroxylamine
           reductase (Hybrid-cluster protein) (HCP)
           gi|19714209|gb|AAL94880.1| Prismane protein
           [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 566

 Score = 94.0 bits (232), Expect = 2e-18
 Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
 Frame = +3

Query: 318 DKMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR-NSPAK-IE 491
           DKM CYQC++T  GTGCT IGVCGKT E +GLQDLL+Y+ KG+A+ + + R N  AK + 
Sbjct: 2   DKMFCYQCQETAKGTGCTSIGVCGKTSETSGLQDLLLYTEKGVAAYSTVFRKNGKAKELL 61

Query: 492 DPAVNTFINGAIFSTLTNVNFADDRFLE 575
           +  VN ++  ++F T+TN NF D+  L+
Sbjct: 62  EGKVNRYLINSLFITITNANFDDNAILD 89

>ref|ZP_00144608.1| Hydroxylamine reductase [Fusobacterium nucleatum subsp. vincentii
           ATCC 49256] gi|27886573|gb|EAA23788.1| Hydroxylamine
           reductase [Fusobacterium nucleatum subsp. vincentii ATCC
           49256]
          Length = 578

 Score = 90.9 bits (224), Expect = 1e-17
 Identities = 43/88 (48%), Positives = 59/88 (66%), Gaps = 2/88 (2%)
 Frame = +3

Query: 318 DKMLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIAR--NSPAKIE 491
           DKM CYQC++T  GTGCT IGVCGKT E +GLQDLL+Y+ KG+A+ + I R      ++ 
Sbjct: 2   DKMFCYQCQETAKGTGCTSIGVCGKTSETSGLQDLLLYTEKGVAAYSAIFRKEGKAKELI 61

Query: 492 DPAVNTFINGAIFSTLTNVNFADDRFLE 575
              VN ++  ++F T+TN NF D   L+
Sbjct: 62  KNKVNRYLINSLFITITNANFDDTAILD 89

>ref|ZP_00129319.1| COG1151: 6Fe-6S prismane cluster-containing protein [Desulfovibrio
           desulfuricans G20]
          Length = 575

 Score = 89.0 bits (219), Expect = 5e-17
 Identities = 45/91 (49%), Positives = 58/91 (63%)
 Frame = +3

Query: 324 MLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIARNSPAKIEDPAV 503
           M C QCEQT  GTGCT +GVCGK PEV+ LQD  VY+++GLA  A  A  +   + +  +
Sbjct: 39  MFCNQCEQTAKGTGCTAMGVCGKQPEVSDLQDATVYALRGLAIAAQDA--AAKGVREQGM 96

Query: 504 NTFINGAIFSTLTNVNFADDRFLEFVSEARA 596
             +    +FSTLTNVNF  DRF+ +V E  A
Sbjct: 97  GHYTAARLFSTLTNVNFDPDRFVPWVHEITA 127

>sp|Q01770|HCP_DESDE Hydroxylamine reductase (Hybrid-cluster protein) (Prismane protein)
           (HCP) gi|97362|pir||S24389 hybrid cluster [4Fe-2S-3O]
           protein [validated] - Desulfovibrio desulfuricans
           gi|49286|emb|CAA78029.1| prismane protein [Desulfovibrio
           desulfuricans]
          Length = 545

 Score = 85.9 bits (211), Expect = 4e-16
 Identities = 40/86 (46%), Positives = 53/86 (61%)
 Frame = +3

Query: 324 MLCYQCEQTKSGTGCTEIGVCGKTPEVAGLQDLLVYSVKGLASLAHIARNSPAKIEDPAV 503
           M CYQC++T    GCT++GVCGK PE A LQD L+Y  KGL  +A   R +  K  D  +
Sbjct: 5   MFCYQCQETVGNKGCTQVGVCGKKPETAALQDALIYVTKGLGQIATRLR-AEGKAVDHRI 63

Query: 504 NTFINGAIFSTLTNVNFADDRFLEFV 581
           +  + G +F+T+TN NF DD   E V
Sbjct: 64  DRLVTGNLFATITNANFDDDILAERV 89



EST assemble image


clone accession position
1 HCL079g12_r AV643996 1 549
2 MXL093c10_r BP098438 100 492
3 MXL094f05_r BP098523 101 487
4 HCL016b02_r AV640425 103 246
5 HCL059f08_r AV642873 103 525
6 HCL056g05_r AV642725 103 622
7 HCL072h05_r AV643620 104 543
8 LCL029d03_r AV627606 107 621
9 HCL044d04_r AV642042 107 423
10 MXL074c07_r BP097349 108 494
11 HCL026d02_r AV641020 109 459
12 HCL069a08_r AV643400 111 601
13 HCL080h04_r AV644051 116 622
14 HCL086d12_r AV644330 117 544
15 MXL041f08_r BP095429 117 507
16 HC062b05_r AV636634 120 577
17 HCL023a01_r AV640822 288 709




Chlamydomonas reinhardtii
Kazusa DNA Research Institute