KCC002076A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002076A_C01 KCC002076A_c01
GTAAAAATGGCCCTTCGCTCGATTACCCGCGTCTCGGCGCGCACCGCCTGCCGCGCTGCC
ACGGCCGCTCGTCGCGCGGCCGTGACTGTGCGTGCGGCCCACAACCCCGCCGCCGTCACC
AAGAAGGTCTACTTCGACGTGAACATCGGCGCCAACTCGGCCGGCCGCGTGGTGATTGGC
CTGTACGGCAACGACGTGCCGGACACGGTGGAGAACTTCCGCGCGCTGTGCACCGGCGAG
AAGGGCTTCGGCTACAAGGGCTCGGTCTTCCACCGCGTCATCAAGCAGTTCATGATCCAG
GGCGGTGACTTCACTGCCGGCAACGGCACCGGCGGCAAGTCCATCTACGGCGCCCGCTTC
AACGATGAGAACTTCAAGTACAAGCACACCGGCCCCGGCATCCTGTCCATGGCCAACGCC
GGCCCCAACACCAACGGCTCGCAGTTCTTCATCTGCACCGTGGCCACCCCCTGGCTGGAC
GGCCGCCACGTGGTGTTCGGCGAGGTGGTGGAGGGGCTGGACGTGGTGGCCAAGGTGGAG
AACTCGCCCACCGGCCGCGGCGACCGCCCCGTGGAGCCCATCACCATTGCTGCCTGCGGC
GAGCTGTAGAGCGGCCCCGGCAGTACCGTAGTAGCGGTGAACACAGCTGAGGGTGATGTT
TATGACGGACGTGCGTGTTGTGGGGAGGGGTGTCGCAGCGTGCCAGCGGCGGGTGAAGCG
CGGCAAAAGCGGCATGAAGCTGAATTTGTGATGTGCATGGTGAAGCCGAGTTTCGGGCTG
TGGCTGTGACACGGCTGTAAGGGGTGTGTCGATCGGACCCTGCTTGGGGTGCTGTAACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002076A_C01 KCC002076A_c01
         (839 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidops...   260  2e-68
ref|NP_196816.1| peptidyl-prolyl isomerase protein [Arabidopsis ...   260  2e-68
gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsi...   260  2e-68
sp|Q01490|CYPB_ORPSP Peptidyl-prolyl cis-trans isomerase B precu...   253  3e-66
gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]   252  6e-66

>emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
          Length = 259

 Score =  260 bits (664), Expect = 2e-68
 Identities = 119/167 (71%), Positives = 137/167 (81%), Gaps = 3/167 (1%)
 Frame = +1

Query: 115 VTKKVYFDVNIG---ANSAGRVVIGLYGNDVPDTVENFRALCTGEKGFGYKGSVFHRVIK 285
           +T KVYFD+++G      AGR+VIGLYG+DVP TVENFRALCTGEKGFGYKGS FHRVI+
Sbjct: 88  ITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIR 147

Query: 286 QFMIQGGDFTAGNGTGGKSIYGARFNDENFKYKHTGPGILSMANAGPNTNGSQFFICTVA 465
            FMIQGGDF  GNGTGGKS+YG  F DENFK  H GPG+LSMANAGPNTNGSQFFICT+ 
Sbjct: 148 DFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIK 207

Query: 466 TPWLDGRHVVFGEVVEGLDVVAKVENSPTGRGDRPVEPITIAACGEL 606
           T WLDGRHVVFG+V+EG++VV  +E   T RGDRP + + IA CG+L
Sbjct: 208 TSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254

>ref|NP_196816.1| peptidyl-prolyl isomerase protein [Arabidopsis thaliana]
           gi|32130267|sp|Q9ASS6|TL20_ARATH Peptidyl-prolyl
           cis-trans isomerase TLP20, chloroplast precursor
           (PPIase) (Rotamase) (Thylakoid lumen PPIase of 20 kDa)
           gi|13605817|gb|AAK32894.1|AF367307_1 AT5g13120/T19L5_80
           [Arabidopsis thaliana] gi|16323328|gb|AAL15377.1|
           AT5g13120/T19L5_80 [Arabidopsis thaliana]
          Length = 259

 Score =  260 bits (664), Expect = 2e-68
 Identities = 119/167 (71%), Positives = 137/167 (81%), Gaps = 3/167 (1%)
 Frame = +1

Query: 115 VTKKVYFDVNIG---ANSAGRVVIGLYGNDVPDTVENFRALCTGEKGFGYKGSVFHRVIK 285
           +T KVYFD+++G      AGR+VIGLYG+DVP TVENFRALCTGEKGFGYKGS FHRVI+
Sbjct: 88  ITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIR 147

Query: 286 QFMIQGGDFTAGNGTGGKSIYGARFNDENFKYKHTGPGILSMANAGPNTNGSQFFICTVA 465
            FMIQGGDF  GNGTGGKS+YG  F DENFK  H GPG+LSMANAGPNTNGSQFFICT+ 
Sbjct: 148 DFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIK 207

Query: 466 TPWLDGRHVVFGEVVEGLDVVAKVENSPTGRGDRPVEPITIAACGEL 606
           T WLDGRHVVFG+V+EG++VV  +E   T RGDRP + + IA CG+L
Sbjct: 208 TSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254

>gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
          Length = 259

 Score =  260 bits (664), Expect = 2e-68
 Identities = 119/167 (71%), Positives = 137/167 (81%), Gaps = 3/167 (1%)
 Frame = +1

Query: 115 VTKKVYFDVNIG---ANSAGRVVIGLYGNDVPDTVENFRALCTGEKGFGYKGSVFHRVIK 285
           +T KVYFD+++G      AGR+VIGLYG+DVP TVENFRALCTGEKGFGYKGS FHRVI+
Sbjct: 88  ITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIR 147

Query: 286 QFMIQGGDFTAGNGTGGKSIYGARFNDENFKYKHTGPGILSMANAGPNTNGSQFFICTVA 465
            FMIQGGDF  GNGTGGKS+YG  F DENFK  H GPG+LSMANAGPNTNGSQFFICT+ 
Sbjct: 148 DFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIK 207

Query: 466 TPWLDGRHVVFGEVVEGLDVVAKVENSPTGRGDRPVEPITIAACGEL 606
           T WLDGRHVVFG+V+EG++VV  +E   T RGDRP + + IA CG+L
Sbjct: 208 TSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254

>sp|Q01490|CYPB_ORPSP Peptidyl-prolyl cis-trans isomerase B precursor (PPIase) (Rotamase)
           (Cyclophilin B) gi|849081|gb|AAD04195.1| cyclophilin B
           precursor [Orpinomyces sp. PC-2]
          Length = 203

 Score =  253 bits (646), Expect = 3e-66
 Identities = 124/176 (70%), Positives = 138/176 (77%)
 Frame = +1

Query: 79  AVTVRAAHNPAAVTKKVYFDVNIGANSAGRVVIGLYGNDVPDTVENFRALCTGEKGFGYK 258
           A  V A+ NP  VT KVYFD+  G    GR+V+GLYG  VP TVENFRAL TGEKG+GYK
Sbjct: 17  ATLVSASTNPK-VTNKVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYGYK 75

Query: 259 GSVFHRVIKQFMIQGGDFTAGNGTGGKSIYGARFNDENFKYKHTGPGILSMANAGPNTNG 438
            S FHRVIK FMIQGGDFT G+GTGGKSIYG RF DENFK +HTGPGILSMANAG +TNG
Sbjct: 76  NSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNG 135

Query: 439 SQFFICTVATPWLDGRHVVFGEVVEGLDVVAKVENSPTGRGDRPVEPITIAACGEL 606
           SQFFI TV T WLDGRHVVFG+V+EG+DVV  +E + T  GDRP  P+ IA CGEL
Sbjct: 136 SQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191

>gb|AAM63944.1| peptidylprolyl isomerase ROC4 [Arabidopsis thaliana]
          Length = 260

 Score =  252 bits (643), Expect = 6e-66
 Identities = 126/189 (66%), Positives = 141/189 (73%)
 Frame = +1

Query: 40  RTACRAATAARRAAVTVRAAHNPAAVTKKVYFDVNIGANSAGRVVIGLYGNDVPDTVENF 219
           RTAC  + AA    VT       A VT KVYFDV IG   AGR+V+GL+G  VP TVENF
Sbjct: 72  RTACVKSMAAEEEEVT----EPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENF 127

Query: 220 RALCTGEKGFGYKGSVFHRVIKQFMIQGGDFTAGNGTGGKSIYGARFNDENFKYKHTGPG 399
           RALCTGEK +GYKGS FHR+IK FMIQGGDFT GNGTGG SIYGA+F DENF  KHTGPG
Sbjct: 128 RALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPG 187

Query: 400 ILSMANAGPNTNGSQFFICTVATPWLDGRHVVFGEVVEGLDVVAKVENSPTGRGDRPVEP 579
           ILSMANAGPNTNGSQFFICTV T WLD +HVVFG+V+EG+ +V  +E+  T   D P + 
Sbjct: 188 ILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKG 247

Query: 580 ITIAACGEL 606
             I ACGEL
Sbjct: 248 CRIYACGEL 256



EST assemble image


clone accession position
1 MXL009g08_r BP093536 1 502
2 MXL058b04_r BP096398 1 460
3 HC061g06_r AV636609 195 701
4 HCL018a11_r AV640544 440 839




Chlamydomonas reinhardtii
Kazusa DNA Research Institute