KCC002071A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002071A_C01 KCC002071A_c01
CTCGCCTTCGCGTCTGGCCACAAAACTCTGAAACAATGCTTACCAGCCGCGTTTCCTCGC
GCGTCTCCGTGCGCAAGACGAATGCAACGCGCATGGCTCCCGCTGTGAGCACTGGTTCCG
CTCGCGCGGGCCGGGCCCAGACCGTTGTGCGCGCCTCAGCTGAGTCCGCAGATGCTTCAC
GTCGCGCTACCCTGGCCACGCTTGGCGCTGCTGCCGTCTCCGCCAGCGGCCTGACCTCCG
TTTTCAGCGCCCGGGCTGATGAGGAGCCCAAGGTGACGCAGAAGGTTTACTTCGACGTGT
CTGTGGGCGGCCAGCCGGCGGGGCGCATTGTGATGGGGCTGTACGGCGAGGACGTGCCCA
AGACCGTGGCCAACTTTGTCGCACTGGCCACCGGCGAGAAGGGCTTCGGCTACAAGGGCT
GCACCTTCCACCGCATCATCAAGAACTTCGTCATCCACGGTGGTGACTTTGAGCGCGGCA
ATGGTACTGGCGGTTACAGCATCTACGGncgtcgcttcgcggacgagtc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002071A_C01 KCC002071A_c01
         (529 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_326693.1| hypothetical protein [Neurospora crassa] gi|289...   138  5e-32
emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidops...   138  5e-32
ref|NP_196816.1| peptidyl-prolyl isomerase protein [Arabidopsis ...   138  5e-32
emb|CAD21421.1| probable cyclophilin [Neurospora crassa]              138  5e-32
gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsi...   138  5e-32

>ref|XP_326693.1| hypothetical protein [Neurospora crassa] gi|28923113|gb|EAA32330.1|
           hypothetical protein [Neurospora crassa]
          Length = 282

 Score =  138 bits (347), Expect = 5e-32
 Identities = 64/94 (68%), Positives = 75/94 (79%)
 Frame = +3

Query: 246 SARADEEPKVTQKVYFDVSVGGQPAGRIVMGLYGEDVPKTVANFVALATGEKGFGYKGCT 425
           SA A + PK+T KVYFD+  G +P GRIVMGLYG+ VPKT  NF ALATGEKGFGY+G T
Sbjct: 24  SAEAAKGPKITHKVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGST 83

Query: 426 FHRIIKNFVIHGGDFERGNGTGGYSIYGRRFADE 527
           FHR+IK F+I GGDF +G+GTGG SIYG +F DE
Sbjct: 84  FHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDE 117

>emb|CAC05440.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
          Length = 259

 Score =  138 bits (347), Expect = 5e-32
 Identities = 64/93 (68%), Positives = 78/93 (83%), Gaps = 3/93 (3%)
 Frame = +3

Query: 258 DEEPKVTQKVYFDVSVG---GQPAGRIVMGLYGEDVPKTVANFVALATGEKGFGYKGCTF 428
           + + K+T KVYFD+SVG   G+ AGRIV+GLYG+DVP+TV NF AL TGEKGFGYKG TF
Sbjct: 83  EPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTF 142

Query: 429 HRIIKNFVIHGGDFERGNGTGGYSIYGRRFADE 527
           HR+I++F+I GGDFE+GNGTGG S+YGR F DE
Sbjct: 143 HRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE 175

>ref|NP_196816.1| peptidyl-prolyl isomerase protein [Arabidopsis thaliana]
           gi|32130267|sp|Q9ASS6|TL20_ARATH Peptidyl-prolyl
           cis-trans isomerase TLP20, chloroplast precursor
           (PPIase) (Rotamase) (Thylakoid lumen PPIase of 20 kDa)
           gi|13605817|gb|AAK32894.1|AF367307_1 AT5g13120/T19L5_80
           [Arabidopsis thaliana] gi|16323328|gb|AAL15377.1|
           AT5g13120/T19L5_80 [Arabidopsis thaliana]
          Length = 259

 Score =  138 bits (347), Expect = 5e-32
 Identities = 64/93 (68%), Positives = 78/93 (83%), Gaps = 3/93 (3%)
 Frame = +3

Query: 258 DEEPKVTQKVYFDVSVG---GQPAGRIVMGLYGEDVPKTVANFVALATGEKGFGYKGCTF 428
           + + K+T KVYFD+SVG   G+ AGRIV+GLYG+DVP+TV NF AL TGEKGFGYKG TF
Sbjct: 83  EPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTF 142

Query: 429 HRIIKNFVIHGGDFERGNGTGGYSIYGRRFADE 527
           HR+I++F+I GGDFE+GNGTGG S+YGR F DE
Sbjct: 143 HRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE 175

>emb|CAD21421.1| probable cyclophilin [Neurospora crassa]
          Length = 207

 Score =  138 bits (347), Expect = 5e-32
 Identities = 64/94 (68%), Positives = 75/94 (79%)
 Frame = +3

Query: 246 SARADEEPKVTQKVYFDVSVGGQPAGRIVMGLYGEDVPKTVANFVALATGEKGFGYKGCT 425
           SA A + PK+T KVYFD+  G +P GRIVMGLYG+ VPKT  NF ALATGEKGFGY+G T
Sbjct: 24  SAEAAKGPKITHKVYFDIEQGDKPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGST 83

Query: 426 FHRIIKNFVIHGGDFERGNGTGGYSIYGRRFADE 527
           FHR+IK F+I GGDF +G+GTGG SIYG +F DE
Sbjct: 84  FHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDE 117

>gb|AAM65904.1| peptidylprolyl isomerase-like protein [Arabidopsis thaliana]
          Length = 259

 Score =  138 bits (347), Expect = 5e-32
 Identities = 64/93 (68%), Positives = 78/93 (83%), Gaps = 3/93 (3%)
 Frame = +3

Query: 258 DEEPKVTQKVYFDVSVG---GQPAGRIVMGLYGEDVPKTVANFVALATGEKGFGYKGCTF 428
           + + K+T KVYFD+SVG   G+ AGRIV+GLYG+DVP+TV NF AL TGEKGFGYKG TF
Sbjct: 83  EPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTF 142

Query: 429 HRIIKNFVIHGGDFERGNGTGGYSIYGRRFADE 527
           HR+I++F+I GGDFE+GNGTGG S+YGR F DE
Sbjct: 143 HRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE 175



EST assemble image


clone accession position
1 HC060h11_r AV636549 1 527
2 LC051c10_r AV622566 100 633




Chlamydomonas reinhardtii
Kazusa DNA Research Institute