Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002065A_C01 KCC002065A_c01
(465 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 37 0.14
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 36 0.19
dbj|BAA20782.2| KIAA0324 protein [Homo sapiens] 36 0.19
pir||T02345 hypothetical protein KIAA0324 - human (fragment) gi|... 36 0.19
dbj|BAA83717.1| RNA binding protein [Homo sapiens] 36 0.19
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 36.6 bits (83), Expect = 0.14
Identities = 45/129 (34%), Positives = 53/129 (40%), Gaps = 14/129 (10%)
Frame = +2
Query: 104 SRGPLTRLARPLPGSHT--------PR*QSHQRRSMVSTRLSRRPR*RLRTSTTRWPMLS 259
SR +TR R G H+ R S +RR T L+ R R R RTS W S
Sbjct: 1666 SRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRSRSRTSPAPWKR-S 1724
Query: 260 RMRPSSAS-----LVWPLAPRRHI*-HLSACRPHSLASTSSRRSCCWASSVRRRRTRRCW 421
R R S A+ + PL RR S S + RRS AS V RRR+R
Sbjct: 1725 RSRASPATHRRSRSITPLISRRRSRSRTSPVSRRRSRSVNRRRSRSRASPVSRRRSR--- 1781
Query: 422 ALCSASRTP 448
SRTP
Sbjct: 1782 -----SRTP 1785
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 36.2 bits (82), Expect = 0.19
Identities = 42/131 (32%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Frame = +2
Query: 104 SRGPLTRLARPLPGSHT--------PR*QSHQRRSMVSTRLSRRPR*RLRTSTTRW---- 247
SR +TR R G H+ R S +RR T + R R R RTS W
Sbjct: 1806 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 1865
Query: 248 ----PMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRRSCCWASSVRRRRTRR 415
P R S L+ R +S R S S + RRS AS V RRR+R
Sbjct: 1866 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSR- 1924
Query: 416 CWALCSASRTP 448
SRTP
Sbjct: 1925 -------SRTP 1928
Score = 34.3 bits (77), Expect = 0.71
Identities = 46/146 (31%), Positives = 59/146 (39%), Gaps = 8/146 (5%)
Frame = +2
Query: 35 RKLGRASIYPSLRGHRRPE*PWSSRGPLTRL-ARPLPGSHTPR*QSHQRRSMVSTRLSR- 208
R+ GR+ P+ R R +S P R +R P +H +S R ++S R SR
Sbjct: 1837 RRRGRSRTPPTSRKRSRSR---TSPAPWKRSRSRASPATHR---RSRSRTPLISRRRSRS 1890
Query: 209 ------RPR*RLRTSTTRWPMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRR 370
R R R RTS TR SR P S P ++ R S T+ RR
Sbjct: 1891 RTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPP-----VTRRRSRSRTPTTRRR 1945
Query: 371 SCCWASSVRRRRTRRCWALCSASRTP 448
S V RRR+R SRTP
Sbjct: 1946 SRSRTPPVTRRRSR--------SRTP 1963
>dbj|BAA20782.2| KIAA0324 protein [Homo sapiens]
Length = 1783
Score = 36.2 bits (82), Expect = 0.19
Identities = 42/131 (32%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Frame = +2
Query: 104 SRGPLTRLARPLPGSHT--------PR*QSHQRRSMVSTRLSRRPR*RLRTSTTRW---- 247
SR +TR R G H+ R S +RR T + R R R RTS W
Sbjct: 837 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 896
Query: 248 ----PMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRRSCCWASSVRRRRTRR 415
P R S L+ R +S R S S + RRS AS V RRR+R
Sbjct: 897 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSR- 955
Query: 416 CWALCSASRTP 448
SRTP
Sbjct: 956 -------SRTP 959
Score = 34.3 bits (77), Expect = 0.71
Identities = 46/146 (31%), Positives = 59/146 (39%), Gaps = 8/146 (5%)
Frame = +2
Query: 35 RKLGRASIYPSLRGHRRPE*PWSSRGPLTRL-ARPLPGSHTPR*QSHQRRSMVSTRLSR- 208
R+ GR+ P+ R R +S P R +R P +H +S R ++S R SR
Sbjct: 868 RRRGRSRTPPTSRKRSRSR---TSPAPWKRSRSRASPATHR---RSRSRTPLISRRRSRS 921
Query: 209 ------RPR*RLRTSTTRWPMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRR 370
R R R RTS TR SR P S P ++ R S T+ RR
Sbjct: 922 RTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPP-----VTRRRSRSRTPTTRRR 976
Query: 371 SCCWASSVRRRRTRRCWALCSASRTP 448
S V RRR+R SRTP
Sbjct: 977 SRSRTPPVTRRRSR--------SRTP 994
>pir||T02345 hypothetical protein KIAA0324 - human (fragment)
gi|2996650|gb|AAC08453.1| KIAA0324 [Homo sapiens]
Length = 1791
Score = 36.2 bits (82), Expect = 0.19
Identities = 42/131 (32%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Frame = +2
Query: 104 SRGPLTRLARPLPGSHT--------PR*QSHQRRSMVSTRLSRRPR*RLRTSTTRW---- 247
SR +TR R G H+ R S +RR T + R R R RTS W
Sbjct: 838 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 897
Query: 248 ----PMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRRSCCWASSVRRRRTRR 415
P R S L+ R +S R S S + RRS AS V RRR+R
Sbjct: 898 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSR- 956
Query: 416 CWALCSASRTP 448
SRTP
Sbjct: 957 -------SRTP 960
Score = 34.3 bits (77), Expect = 0.71
Identities = 46/146 (31%), Positives = 59/146 (39%), Gaps = 8/146 (5%)
Frame = +2
Query: 35 RKLGRASIYPSLRGHRRPE*PWSSRGPLTRL-ARPLPGSHTPR*QSHQRRSMVSTRLSR- 208
R+ GR+ P+ R R +S P R +R P +H +S R ++S R SR
Sbjct: 869 RRRGRSRTPPTSRKRSRSR---TSPAPWKRSRSRASPATHR---RSRSRTPLISRRRSRS 922
Query: 209 ------RPR*RLRTSTTRWPMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRR 370
R R R RTS TR SR P S P ++ R S T+ RR
Sbjct: 923 RTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPP-----VTRRRSRSRTPTTRRR 977
Query: 371 SCCWASSVRRRRTRRCWALCSASRTP 448
S V RRR+R SRTP
Sbjct: 978 SRSRTPPVTRRRSR--------SRTP 995
>dbj|BAA83717.1| RNA binding protein [Homo sapiens]
Length = 1275
Score = 36.2 bits (82), Expect = 0.19
Identities = 42/131 (32%), Positives = 50/131 (38%), Gaps = 16/131 (12%)
Frame = +2
Query: 104 SRGPLTRLARPLPGSHT--------PR*QSHQRRSMVSTRLSRRPR*RLRTSTTRW---- 247
SR +TR R G H+ R S +RR T + R R R RTS W
Sbjct: 329 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 388
Query: 248 ----PMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRRSCCWASSVRRRRTRR 415
P R S L+ R +S R S S + RRS AS V RRR+R
Sbjct: 389 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSR- 447
Query: 416 CWALCSASRTP 448
SRTP
Sbjct: 448 -------SRTP 451
Score = 34.3 bits (77), Expect = 0.71
Identities = 46/146 (31%), Positives = 59/146 (39%), Gaps = 8/146 (5%)
Frame = +2
Query: 35 RKLGRASIYPSLRGHRRPE*PWSSRGPLTRL-ARPLPGSHTPR*QSHQRRSMVSTRLSR- 208
R+ GR+ P+ R R +S P R +R P +H +S R ++S R SR
Sbjct: 360 RRRGRSRTPPTSRKRSRSR---TSPAPWKRSRSRASPATHR---RSRSRTPLISRRRSRS 413
Query: 209 ------RPR*RLRTSTTRWPMLSRMRPSSASLVWPLAPRRHI*HLSACRPHSLASTSSRR 370
R R R RTS TR SR P S P ++ R S T+ RR
Sbjct: 414 RTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPP-----VTRRRSRSRTPTTRRR 468
Query: 371 SCCWASSVRRRRTRRCWALCSASRTP 448
S V RRR+R SRTP
Sbjct: 469 SRSRTPPVTRRRSR--------SRTP 486
