KCC002052A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002052A_C01 KCC002052A_c01
caaggagctggtggaGGAGGCGCACCCCTACTGCACCACCATTGTCCATCGACGCCGACC
TGGTGCCCCGCCTGTGCACCGACAACATCTCGGACTTCATCGTGCTGGCCGACAACCTGG
TGGACACCTTCAAGCTCGTGGCCGACGACATGCGCATGCTGATGAAGGGCACCAAGCCCG
AGGGCTACGACTTCAGGAAGGTGCTGGGCATGCTTAAGAAGGCCGCGTCCGACCCCGGCG
GCCTGCTCAAGGACCTGCTGGACGAGAAGATGGACAAGGCCGAGGACGCCGTGGACGCCG
CGGCCGCGTCCAACGAGAAGCGCCTGTACGCGCCCGGGCGGCTCATGTTCCTGTCCAAGC
CGGAGAAGGGCAATGGGCCATACACCATCAGCAAGGGCTCAATGGCGTCAGAGACGAGCA
AGATGCTGCTCAAGGGCTCCATGTTCAAGGACCACTCGTGCGGGGGCTACGTCAAGGTCT
GCTGCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002052A_C01 KCC002052A_c01
         (487 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAA98755.1| methyltransferase                                       55  4e-07
ref|ZP_00090974.1| COG1052: Lactate dehydrogenase and related de...    50  1e-05
ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300...    49  2e-05
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    47  9e-05
ref|ZP_00007628.1| COG2710: Nitrogenase molybdenum-iron protein,...    47  9e-05

>gb|AAA98755.1| methyltransferase
          Length = 492

 Score = 55.1 bits (131), Expect = 4e-07
 Identities = 41/107 (38%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
 Frame = +1

Query: 169 APS-PRATTSGRCWACLRRPRPTPAACSRTCWTRRWTRPRTPWTPRPRPTRS-ACTRPGG 342
           APS  R  T+  CW C RRPRPT  +C+R    RR TR    W     PT S +C+ P  
Sbjct: 390 APSRTRKPTTNMCWWCSRRPRPTHGSCARPAPARRKTR---CW-----PTSSGSCSGPNC 441

Query: 343 SCSCPSRRRAMGHTPSARAQWRQRRA-RCCSRAPCSRTTRAGATSRS 480
           +C  PS  R      S R   + RR+ + C+R P S      + SRS
Sbjct: 442 TCRTPSSNRKSPARSSRRRTKKCRRSMKSCARPPKSWKPARKSCSRS 488

>ref|ZP_00090974.1| COG1052: Lactate dehydrogenase and related dehydrogenases
           [Azotobacter vinelandii]
          Length = 535

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 50/160 (31%), Positives = 60/160 (37%), Gaps = 4/160 (2%)
 Frame = +1

Query: 19  GAPLLHHHCPSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWPT-TCAC**RAPSPRATTS 195
           GAP      P+T T  PA      RT +  P+  W  +S+ P   CA    + S   TT+
Sbjct: 18  GAPSARRSIPATGTSPPAAWCRPGRTMASPPSANWPRNSASPAWRCASTAASSSTSRTTA 77

Query: 196 GRCWACLRRPRPTPAACS--RTCWTRRWTRPRTPWTPRPRPTRSACTRPGGSCSCPSRRR 369
             C A   R  PTP  C   R CW    +RPR P           C RP           
Sbjct: 78  --CGARCSRRSPTPRWCCSPRKCWRPASSRPRRP-----------CARPSS--------- 115

Query: 370 AMGHTPSARAQWRQRRARCCSRAPCSR-TTRAGATSRSAA 486
                P AR  WR    RC + + CS     AG   R AA
Sbjct: 116 ----VPIARILWR----RCAATSACSEGALLAGPAPRRAA 147

>ref|XP_317879.1| ENSANGP00000004917 [Anopheles gambiae] gi|21300834|gb|EAA12979.1|
           ENSANGP00000004917 [Anopheles gambiae str. PEST]
          Length = 257

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 50/152 (32%), Positives = 59/152 (37%), Gaps = 16/152 (10%)
 Frame = -2

Query: 468 SPRTSGP*TWSP*AASCSSLTPLSPC*WCMAHCPSPAWTGT*AARARTGASRWTRPRRPR 289
           SP ++GP  W P     S+  P  P                   R  +G SR      P 
Sbjct: 3   SPLSAGPAAWPPRRPRSSTDRPTPP-------------------RTASGPSR-----TPA 38

Query: 288 RPRPCPSSRPAGP*AGRRGRTRPS*ACPAP-----------S*SRSPRAWCPSSACACRR 142
           RP   P +RP+ P   RR    P    PAP           S S +P   CPSS CA RR
Sbjct: 39  RP---PRTRPSAPGRIRRAAASPPPFPPAPARRRGCFSGDFSASAAPARCCPSSCCA-RR 94

Query: 141 PRA*RC---PPGCRPAR*S--PRCCRCTGGAP 61
           PR+      PP   PAR +  P  CRC   AP
Sbjct: 95  PRSPPFCFPPPAAAPARRAHRPPRCRCAPAAP 126

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
 Frame = +1

Query: 217 RRPRPTPAACSRTCWTRRWTRPRTPWTPRPRPTRSACTRPGGSCSCPSR-RRAMGHTPSA 393
           RRPR +         T R T PRT   P   P R   TRP    S P R RRA    P  
Sbjct: 15  RRPRSS---------TDRPTPPRTASGPSRTPARPPRTRP----SAPGRIRRAAASPPPF 61

Query: 394 RAQWRQRR-------------ARCCSRAPCSRTTRA 462
                +RR             ARCC  + C+R  R+
Sbjct: 62  PPAPARRRGCFSGDFSASAAPARCCPSSCCARRPRS 97

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 39/121 (32%), Positives = 45/121 (36%), Gaps = 17/121 (14%)
 Frame = +1

Query: 172 PSPRATTSGRCWACLRRPRPTPAACSRTCWTRRWTRPRTPWTPRPRPTR-------SACT 330
           P+P  T SG      R PR  P+A  R    RR      P+ P P   R       SA  
Sbjct: 24  PTPPRTASGPSRTPARPPRTRPSAPGR---IRRAAASPPPFPPAPARRRGCFSGDFSASA 80

Query: 331 RPGGSC--SCPSRRRAM--------GHTPSARAQWRQRRARCCSRAPCSRTTRAGATSRS 480
            P   C  SC +RR              P+ RA  R  R RC   AP S   RA    RS
Sbjct: 81  APARCCPSSCCARRPRSPPFCFPPPAAAPARRAH-RPPRCRCAPAAP-SPPARAFGPWRS 138

Query: 481 A 483
           +
Sbjct: 139 S 139

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
           gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
           melanogaster]
          Length = 1225

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 49/157 (31%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
 Frame = +1

Query: 49  STPTWCPACAPT---TSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATTSGRCWACLR 219
           +TP  C     T   T+ TS+  PTT  TP S+  TT +      +PR+TT+       R
Sbjct: 212 TTPCTCAQTTTTPRSTTTTSTSRPTTT-TPRSTTTTTTSRP-TTTTPRSTTT----TTTR 265

Query: 220 RPRPTPAACSRTCWT--RRWTRPR---TPWTPRPRPTRSACTRPGGSCSCPSRRRAMGHT 384
           RP  T   C+ T  T     T PR   T  T RP  T   CT    +CS P+R      T
Sbjct: 266 RPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTSTCS-PTRTTPRSTT 324

Query: 385 PSARAQWRQRRARC-------CSRAPCSRTTRAGATS 474
            ++ ++      RC       C+R P + T R+  T+
Sbjct: 325 TTSTSRPTTTTPRCTTTPSTTCTRRPTTTTPRSTTTT 361

 Score = 45.1 bits (105), Expect = 5e-04
 Identities = 34/99 (34%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
 Frame = +1

Query: 46  PSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWP----TTCAC**RAPSPRATTSGRCWAC 213
           P   T    CAPTT+   S   TT   P+++ P    TT  C     +PR+TT+      
Sbjct: 272 PRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTT----TS 327

Query: 214 LRRPRPTPAACSRTCWTRRWTRPRTPWTPRPRPTRSACT 330
             RP  T   C+ T  T   T  R P T  PR T + CT
Sbjct: 328 TSRPTTTTPRCTTTPST---TCTRRPTTTTPRSTTTTCT 363

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 49/158 (31%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
 Frame = +1

Query: 46   PSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATT---SGRCWACL 216
            P+T T       TTSR ++  P +  TPS+S PTT        +PR+TT   + R     
Sbjct: 958  PTTTTPRSTTTTTTSRPTTTTPRSTTTPSTSRPTT-------TTPRSTTTTSTSRPTTTT 1010

Query: 217  RRPRPTPAACSRTCWTRRWTRPRT---PWTPRPRPTRSACT-RP----GGSCSCPSRRRA 372
             R     + C+ T  T R T   T   P T  PR T +  T RP      S + P   R 
Sbjct: 1011 PRSTTKTSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCTSRP 1070

Query: 373  MGHTPSARAQWRQRRARCCSRAPCSRTTRAGATSRSAA 486
               TP  R+      +R  +  P S TT    T+ SA+
Sbjct: 1071 TTTTP--RSTTTTTTSRPTTTTPRSTTTPCPTTTPSAS 1106

 Score = 40.0 bits (92), Expect = 0.015
 Identities = 45/153 (29%), Positives = 63/153 (40%), Gaps = 10/153 (6%)
 Frame = +1

Query: 49   STPTWCPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATTSGRCWAC--LRR 222
            +T T CP      S T++C      T   S  TTC       +PR+TT+  C +C     
Sbjct: 856  TTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRSTTT-TCTSCPTTTT 914

Query: 223  PRPTPAACS---RTCWTRRWTRPRT--PWTPRPRPTRSACT-RPGGSC--SCPSRRRAMG 378
            PR T   C+    T   R  T+  T  P T  PR T +  T RP  +   S  +   +  
Sbjct: 915  PRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRP 974

Query: 379  HTPSARAQWRQRRARCCSRAPCSRTTRAGATSR 477
             T + R+      +R  +  P S TT   +TSR
Sbjct: 975  TTTTPRSTTTPSTSRPTTTTPRSTTTT--STSR 1005

 Score = 38.9 bits (89), Expect = 0.033
 Identities = 41/149 (27%), Positives = 57/149 (37%), Gaps = 6/149 (4%)
 Frame = +1

Query: 46   PSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRAT----TSGRCWAC 213
            P+T T       +TS  ++  P +  T S+S PTT        +PR+T    TSG     
Sbjct: 798  PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT-------TTPRSTTTTSTSGPTTTT 850

Query: 214  LRRPRPTPAACSRTCWTRRWTRPRT--PWTPRPRPTRSACTRPGGSCSCPSRRRAMGHTP 387
             R    T  +C  T   R  T   T  P T  PR T + CT      SCP+       T 
Sbjct: 851  PRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTTCT------SCPTTTTPRSTTT 904

Query: 388  SARAQWRQRRARCCSRAPCSRTTRAGATS 474
            +            C+  P + T R+  T+
Sbjct: 905  T------------CTSCPTTTTPRSTTTT 921

 Score = 37.7 bits (86), Expect = 0.074
 Identities = 42/159 (26%), Positives = 59/159 (36%), Gaps = 15/159 (9%)
 Frame = +1

Query: 46   PSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATTSGRCWACLRRP 225
            P+T T       +TS  ++  P +  T S+S PTT       P    TTS  C      P
Sbjct: 814  PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTT-----TTPRSTTTTSTSC-PTTTTP 867

Query: 226  RPTPAACSRTCWTRRWTRPRT--------PWTPRPRPTRSACTRPGGSCSCPSRRRAMGH 381
            R T   C+    T   T PR+        P T  PR T + CT      SCP+       
Sbjct: 868  RSTTTTCTSGPTT---TTPRSTTTTCTSCPTTTTPRSTTTTCT------SCPTTTTPRST 918

Query: 382  TPSARA-------QWRQRRARCCSRAPCSRTTRAGATSR 477
            T +  +       +   + + C       R+T   +TSR
Sbjct: 919  TTTCTSGPTTTTPRSTTKTSTCAPTTTTPRSTTTTSTSR 957

 Score = 32.3 bits (72), Expect = 3.1
 Identities = 39/157 (24%), Positives = 55/157 (34%), Gaps = 10/157 (6%)
 Frame = +1

Query: 43  CPSTPTWCPACAPTT----SRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRAT----TSG 198
           C +TP+      PTT    S T++C      T   S  TTC       +PR+T    TSG
Sbjct: 338 CTTTPSTTCTRRPTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSGPTTTTPRSTTTTSTSG 397

Query: 199 RCWACLRRPRPTPAACSRTCWTRRWTRPRT--PWTPRPRPTRSACTRPGGSCSCPSRRRA 372
                 R    T  +   T   R  T   T  P T  PR T +  T   G  +   R   
Sbjct: 398 PTTTTPRSTTTTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTST--SGPTTTTPRSTT 455

Query: 373 MGHTPSARAQWRQRRARCCSRAPCSRTTRAGATSRSA 483
              T        +      +  P + T R+  T+ ++
Sbjct: 456 TTSTSGPTTTTPRSTTTTSTSGPTTTTPRSTTTTSTS 492

 Score = 32.0 bits (71), Expect = 4.0
 Identities = 27/90 (30%), Positives = 37/90 (41%)
 Frame = +1

Query: 43   CPSTPTWCPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATTSGRCWACLRR 222
            C S PT     + TT+ TS    TT  + ++  PTT      + SP  TT+ R   C   
Sbjct: 1066 CTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCPTTTP----SASPTRTTTTR-RPCPCH 1120

Query: 223  PRPTPAACSRTCWTRRWTRPRTPWTPRPRP 312
            P+P       + W    T P   W  +P P
Sbjct: 1121 PQPPYQIPPWSWWYPNPTYPNPVWPWQPNP 1150

 Score = 31.6 bits (70), Expect = 5.3
 Identities = 41/154 (26%), Positives = 56/154 (35%), Gaps = 9/154 (5%)
 Frame = +1

Query: 43  CPSTPTW-CPACAPTTSRTSSCWPTTWWTPSSSWPTTCAC**RAPSPRATTSGRCWACLR 219
           C  TP   C   + T   +S C  T+   P+S     C      P+P  +T G       
Sbjct: 161 CTDTPPCTCSEESSTAIPSSPCIDTSTVIPTSP----CTQETTTPTPTCSTQGT------ 210

Query: 220 RPRPTPAACSRTCWTRRWTRPRT---PWTPRPRPTRSACT-RP----GGSCSCPSRRRAM 375
             + TP  C++T  T R T   +   P T  PR T +  T RP      S +  + RR  
Sbjct: 211 --QTTPCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPT 268

Query: 376 GHTPSARAQWRQRRARCCSRAPCSRTTRAGATSR 477
             TP          + C       R+T    TSR
Sbjct: 269 TTTPRCTT----TTSTCAPTTTTPRSTTTTTTSR 298

 Score = 31.2 bits (69), Expect = 6.9
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +1

Query: 166 RAPSPRATTSGRCWACLRRPR------PTPAACSRTCWTRRWTRPRTPWTPR-PRPTRSA 324
           R  + R  ++ R     +RPR       T  A  RT  T+R TR R P TP+ P  T S 
Sbjct: 67  RQKTKRPKSTRRTTKRTKRPRRKTTKWTTKRATKRT--TKRTTR-RRPTTPKTPDTTDSP 123

Query: 325 CTRPGGSCSCPSRRRA 372
            T  G  C+C  R  A
Sbjct: 124 ITTTGAECTCSDRTTA 139

>ref|ZP_00007628.1| COG2710: Nitrogenase molybdenum-iron protein, alpha and beta chains
           [Rhodobacter sphaeroides]
          Length = 675

 Score = 47.4 bits (111), Expect = 9e-05
 Identities = 52/154 (33%), Positives = 65/154 (41%), Gaps = 26/154 (16%)
 Frame = +2

Query: 50  RRRPGAPPVHRQHL----GLHRAGRQPGG--HLQARGR----RHAHADEGHQARGLR--- 190
           RRRP   P+HR+      GL  AG + GG  HL A+G     R  H D GH+   +R   
Sbjct: 58  RRRPARAPLHRRAQDLVGGLGAAGTRHGGGRHLDAQGHARRPRARHRDHGHRGPHVREHG 117

Query: 191 ----LQEGAGHA*E----GRVRPRRPAQGPAG---REDGQGRGRRGRRGRVQREAPVRAR 337
               + + AG A      G     R A+GP     RE G+ R  R   G        R+R
Sbjct: 118 AEGDVSDAAGRAGRCAYVGGAVAVRGAEGPRALDRRESGKARALRRLHGH------GRSR 171

Query: 338 AAHVPV--QAGEGQWAIHHQQGLNGVRDEQDAAQ 433
           A H PV  Q   G+ A     G  G R  +DA Q
Sbjct: 172 ARHRPVDQQPDVGRAARPRALGRAGRRSRRDALQ 205



EST assemble image


clone accession position
1 HC056d04_r AV636197 1 417
2 LC020c02_r AV620297 16 487
3 MX052b10_r BP088122 61 422




Chlamydomonas reinhardtii
Kazusa DNA Research Institute