KCC002051A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002051A_C01 KCC002051A_c01
CTCACCTGAACCGCGCATTCCCAAAGCTCAGAGAACAAAGCCAGCCACAGCCCGCGAAAC
AGCCCGGCCGCGCCACAACGAGTGCGCGCGAGGCATGCTACCCTTTTTCTACTTTTCAAC
CCACTACTACGCTAGCGCCAACTCGTGACCTTGTATTTACCCGGCGACGTCTCCTGACTC
CACCCGAATGCTTGCTGCCTCGCCGCCTCTCTTCGCTCACGTCCATAAGTAGCTTAATAA
AGGATCTGGTGGAAAATGATGGACCGAAAACGATGGTATTTCGGCGTGTACTACCAGTTC
GCCGAGGATCGGCACGATGTTTGGATTGTCGACGTCGACAACGCCTGCGTCACGGCAGAC
ACCAAGGATGAGGCGATGGCGGATATCACATCGCAACTGTCGGCTTGCCTGAAGGATTAC
ACTGACACCGGCAAGGCTCTTCCCCCCGCCTCGTCCCAGGCGGAGGCGATGGTCAAGGCC
GCGGACATGCTGCGGGACGCCCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002051A_C01 KCC002051A_c01
         (504 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD39901.1| OSJNBa0065B15.5 [Oryza sativa (japonica cultivar...    38  0.081
gb|AAG25718.1|AF309416_1 ovarian fibroin-like substance-3 [Cypri...    37  0.18
ref|ZP_00140657.1| COG0596: Predicted hydrolases or acyltransfer...    36  0.24
gb|AAP74957.1| keratinocytes proline-rich protein [Rattus norveg...    36  0.31
ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaer...    35  0.40

>emb|CAD39901.1| OSJNBa0065B15.5 [Oryza sativa (japonica cultivar-group)]
          Length = 872

 Score = 37.7 bits (86), Expect = 0.081
 Identities = 25/74 (33%), Positives = 32/74 (42%)
 Frame = -3

Query: 502 GRPAACPRP*PSPPPGTRRGEEPCRCQCNPSGKPTVAM*YPPSPHPWCLP*RRRCRRRQS 323
           GR AA   P P  PP       P      P+  P   +  PP P P CLP   + R RQ+
Sbjct: 433 GRQAASRAPSPLAPPSPPAPSPPIPPPRPPAPSPPAPLAPPPPPPPPCLPAPPKTRSRQA 492

Query: 322 KHRADPRRTGSTRR 281
                P RT +T++
Sbjct: 493 ---PPPARTRATKK 503

>gb|AAG25718.1|AF309416_1 ovarian fibroin-like substance-3 [Cyprinus carpio]
          Length = 293

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 39/117 (33%), Positives = 47/117 (39%), Gaps = 4/117 (3%)
 Frame = +3

Query: 162 RRRLLTPPECLLPRRLSSLTSISSLIKDLVENDGPKTMVFRRVLPVRRGSARCLDCR--R 335
           RR  + P +C LP  +    +  S  +D      P T   ++  P   G A    C   R
Sbjct: 28  RRTTVKPGQCPLPEMIPPCAA--SCFRD---GQCPAT---QKCCPTTSGFACSEPCGQGR 79

Query: 336 RQRLRHG--RHQG*GDGGYHIATVGLPEGLH*HRQGSSPRLVPGGGDGQGRGHAAGR 500
            Q   HG  R QG G G       G  EG H   QG       GGG GQG GH +GR
Sbjct: 80  GQSSCHGGGRGQGEGHGSGQGGGRGQGEG-HGSGQGEGHGSGQGGGRGQGEGHGSGR 135

 Score = 33.5 bits (75), Expect = 1.5
 Identities = 21/50 (42%), Positives = 23/50 (46%)
 Frame = +3

Query: 351 HGRHQG*GDGGYHIATVGLPEGLH*HRQGSSPRLVPGGGDGQGRGHAAGR 500
           HG  QG G G       G  EG H   QG       GGG GQG GH +G+
Sbjct: 157 HGSGQGEGHGSGQGGGRGQGEG-HGSGQGEGHGSGQGGGRGQGEGHGSGQ 205

 Score = 32.3 bits (72), Expect = 3.4
 Identities = 25/66 (37%), Positives = 27/66 (40%)
 Frame = +3

Query: 303 RGSARCLDCRRRQRLRHGRHQG*GDGGYHIATVGLPEGLH*HRQGSSPRLVPGGGDGQGR 482
           RG        R Q   HG  QG G G       G  EG H   QG       GGG GQG 
Sbjct: 125 RGQGEGHGSGRGQGEGHGSGQGEGHGS------GQGEG-HGSGQGEGHGSGQGGGRGQGE 177

Query: 483 GHAAGR 500
           GH +G+
Sbjct: 178 GHGSGQ 183

 Score = 32.0 bits (71), Expect = 4.5
 Identities = 20/49 (40%), Positives = 22/49 (44%)
 Frame = +3

Query: 354 GRHQG*GDGGYHIATVGLPEGLH*HRQGSSPRLVPGGGDGQGRGHAAGR 500
           GR QG G G       G  EG   H  G       GGG GQG GH +G+
Sbjct: 208 GRGQGEGHGSGQGGGRGQGEG---HGSGEGHGSGQGGGRGQGEGHGSGQ 253

>ref|ZP_00140657.1| COG0596: Predicted hydrolases or acyltransferases (alpha/beta
           hydrolase superfamily) [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 401

 Score = 36.2 bits (82), Expect = 0.24
 Identities = 28/77 (36%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = -3

Query: 502 GRPAACPRP*PSPPPGTRRGEE--PCRCQCNPSGKPTVAM*YPPSPHPWCLP*RRRCRRR 329
           GRPA  P+P P P PG RRG E  P       S  P+     PP         R   RR 
Sbjct: 28  GRPADAPQPWPDPRPGARRGGEHRPGPSYRPRSRAPSGGTVLPPRRRAAPRVARGARRRG 87

Query: 328 QSKHRADPRRTGSTRRN 278
             + R   RRTG   R+
Sbjct: 88  AGERRVVRRRTGPPARS 104

>gb|AAP74957.1| keratinocytes proline-rich protein [Rattus norvegicus]
          Length = 699

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 496 PAACPRP*PSPPPGTRRGEEPCRC--QCNPSGKPTVAM*YPPSPHPWCLP*RRRCRRRQS 323
           P  CP P P P P  RR  EPC     C+ S KP       P+PHP  +      RR Q 
Sbjct: 526 PEPCPSPEPRPCPPLRRFSEPCLYPEPCSVS-KPVPCPVPCPAPHPRPVHCETPGRRPQP 584

Query: 322 KHRADP 305
             R+ P
Sbjct: 585 SPRSQP 590

 Score = 31.6 bits (70), Expect = 5.8
 Identities = 19/49 (38%), Positives = 20/49 (40%)
 Frame = -3

Query: 499 RPAACPRP*PSPPPGTRRGEEPCRCQCNPSGKPTVAM*YPPSPHPWCLP 353
           RP  CP P P P P  R   EPC     PS +P       P P P   P
Sbjct: 451 RPEPCPSPEPRPCPRPRPRPEPC-----PSPEPRPRPRPDPCPSPELRP 494

 Score = 31.2 bits (69), Expect = 7.6
 Identities = 21/53 (39%), Positives = 24/53 (44%), Gaps = 1/53 (1%)
 Frame = -3

Query: 499 RPAACPRP*PSPPPGTRRGEEPCRCQCNPSGKPTVAM*YPPSPHPW-CLP*RR 344
           RP   P P PSP P  R   +PC    +P  +P       PSP P  C P RR
Sbjct: 493 RPRPRPEPCPSPEPRPRPRPDPCP---SPEPRPRPCPEPCPSPEPRPCPPLRR 542

>ref|ZP_00008038.1| COG2115: Xylose isomerase [Rhodobacter sphaeroides]
          Length = 817

 Score = 35.4 bits (80), Expect = 0.40
 Identities = 37/128 (28%), Positives = 48/128 (36%)
 Frame = -3

Query: 502 GRPAACPRP*PSPPPGTRRGEEPCRCQCNPSGKPTVAM*YPPSPHPWCLP*RRRCRRRQS 323
           GRP+  PRP P P    RR +   RC+             P   HP      RR R R  
Sbjct: 222 GRPSG-PRPDPVPALSRRRADAAQRCRDPGRLHGARTCDRPGGGHP------RRARGRDL 274

Query: 322 KHRADPRRTGSTRRNTIVFGPSFSTRSFIKLLMDVSEERRRGSKHSGGVRRRRRVNTRSR 143
           +H   PRR G  R       P    R     L+ +    R  ++ +G + R RR   R R
Sbjct: 275 RHPRLPRRAG--RHRHPAREPDRRGRRLALGLLALGHRHR--ARRAGSIARGRRFRRRLR 330

Query: 142 VGASVVVG 119
             A+   G
Sbjct: 331 SRAACAHG 338



EST assemble image


clone accession position
1 HC056c12_r AV636193 1 597
2 MX230d02_r BP090870 117 428
3 MX019f11_r BP086894 121 516
4 HC078d08_r AV637848 125 618




Chlamydomonas reinhardtii
Kazusa DNA Research Institute