KCC002046A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002046A_C01 KCC002046A_c01
ctggacacgtgcctgtccatcatgcgcacgttgcacagccagttcgccgactccaagtac
cggccctgcccgctgctggtGCAGTACGTGGACGCGGGGCTGCTGGGAGCCAAGAGCGGC
CGCGGCGTGTTCCAGCACGACGCTGGGTCCGGTGGCGACAAGCAGCACGCCTCGCAGCCG
CACCTGAACCTCACGATGATGCCCAACAATAAGATGCCCAACAACCAGTTCCACCAGCAC
AACAACAACTAATGGTTACACGGCTGCGCAATTTGCAGTATGCTTGCAACATTCGAGCAG
GGCGGCATACCGGTGCACGCTGCACGTTTCAGTGGCTGGAGCACTACTAGGTGGGCGGAT
GTAGCAGCGGCTACTGGAGGAGCCTCCGGTGACGAGGACGCTACTTGCCGAGGATTAGAT
CAGTTGCAAGCAGTTGCGGCAGGGCGGCAGGGTGCTACGGGTGATTCGTCATCACGCGCG
CAGCTAACGCTGCATTTCATTTCATGGCTGGCGCACGGTTGGCAAGCGCTTTTAGATAGG
ATGTCAGAGGACCGCAAGACTACGCTACCCTATGATAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002046A_C01 KCC002046A_c01
         (580 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_386751.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE PRO...    74  2e-12
ref|NP_698944.1| 3-hydroxybutyryl-CoA dehydrogenase [Brucella su...    72  4e-12
ref|NP_539017.1| 3-HYDROXYBUTYRYL-COA DEHYDROGENASE [Brucella me...    72  4e-12
ref|NP_357015.1| AGR_L_2460p [Agrobacterium tumefaciens] gi|1793...    72  4e-12
dbj|BAB89894.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Ory...    72  6e-12

>ref|NP_386751.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE PROTEIN [Sinorhizobium
           meliloti] gi|15075669|emb|CAC47224.1| PROBABLE
           3-HYDROXYBUTYRYL-COA DEHYDROGENASE PROTEIN
           [Sinorhizobium meliloti]
          Length = 290

 Score = 73.6 bits (179), Expect = 2e-12
 Identities = 33/46 (71%), Positives = 38/46 (81%)
 Frame = +1

Query: 1   LDTCLSIMRTLHSQFADSKYRPCPLLVQYVDAGLLGAKSGRGVFQH 138
           LDTCLSIM+ LH   ADSKYRPCPLLV+YV+AG LG KSGRG + +
Sbjct: 236 LDTCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKSGRGFYDY 281

>ref|NP_698944.1| 3-hydroxybutyryl-CoA dehydrogenase [Brucella suis 1330]
           gi|23348841|gb|AAN30859.1|AE014486_5
           3-hydroxybutyryl-CoA dehydrogenase [Brucella suis 1330]
          Length = 291

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   LDTCLSIMRTLHSQFADSKYRPCPLLVQYVDAGLLGAKSGRGVFQH 138
           LDTCLSIM+ LH   ADSKYRPCPLLV+YV+AG LG K+GRG + +
Sbjct: 237 LDTCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY 282

>ref|NP_539017.1| 3-HYDROXYBUTYRYL-COA DEHYDROGENASE [Brucella melitensis]
           gi|25283672|pir||AF3264 3-hydroxybutyryl-CoA
           dehydrogenase (EC 1.1.1.157) [imported] - Brucella
           melitensis (strain 16M) gi|17981974|gb|AAL51281.1|
           3-HYDROXYBUTYRYL-COA DEHYDROGENASE [Brucella melitensis
           16M]
          Length = 291

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   LDTCLSIMRTLHSQFADSKYRPCPLLVQYVDAGLLGAKSGRGVFQH 138
           LDTCLSIM+ LH   ADSKYRPCPLLV+YV+AG LG K+GRG + +
Sbjct: 237 LDTCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGRKTGRGFYDY 282

>ref|NP_357015.1| AGR_L_2460p [Agrobacterium tumefaciens]
           gi|17937304|ref|NP_534093.1| 3-hydroxybutyryl-CoA
           dehydrogenase [Agrobacterium tumefaciens str. C58 (U.
           Washington)] gi|25283670|pir||F98284
           3-hydroxybutyryl-CoA dehydrogenase
           (beta-hydroxybutyryl-CoA dehydrogenase) (bhbD)
           [imported] - Agrobacterium tumefaciens (strain C58,
           Cereon) gi|25283671|pir||AC2999 3-hydroxybutyryl-CoA
           dehydrogenase hbdA [imported] - Agrobacterium
           tumefaciens (strain C58, Dupont)
           gi|15159728|gb|AAK89800.1| AGR_L_2460p [Agrobacterium
           tumefaciens str. C58 (Cereon)]
           gi|17742008|gb|AAL44409.1| 3-hydroxybutyryl-CoA
           dehydrogenase [Agrobacterium tumefaciens str. C58 (U.
           Washington)]
          Length = 303

 Score = 72.4 bits (176), Expect = 4e-12
 Identities = 32/46 (69%), Positives = 38/46 (82%)
 Frame = +1

Query: 1   LDTCLSIMRTLHSQFADSKYRPCPLLVQYVDAGLLGAKSGRGVFQH 138
           LDTCLSIM+ LH   +DSKYRPCPLLV+YV+AG LG KSGRG + +
Sbjct: 249 LDTCLSIMQVLHDGLSDSKYRPCPLLVKYVEAGWLGRKSGRGFYDY 294

>dbj|BAB89894.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Oryza sativa (japonica
           cultivar-group)]
          Length = 302

 Score = 72.0 bits (175), Expect = 6e-12
 Identities = 33/58 (56%), Positives = 40/58 (68%)
 Frame = +1

Query: 1   LDTCLSIMRTLHSQFADSKYRPCPLLVQYVDAGLLGAKSGRGVFQHDAGSGGDKQHAS 174
           LD CLS++R LH+   DSKY PCPLLVQYVDAG LG K G+GV+ +   S   K  +S
Sbjct: 244 LDVCLSVLRVLHNGLGDSKYSPCPLLVQYVDAGRLGKKRGQGVYSYRTRSSSIKPRSS 301



EST assemble image


clone accession position
1 HC055g12_r AV636150 1 508
2 LC072e03_r AV624067 93 580




Chlamydomonas reinhardtii
Kazusa DNA Research Institute