KCC002036A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002036A_C01 KCC002036A_c01
GCGCTCCCGTCTGCTTTGGCCAACTGCTGCCTCGAGTTTCTTCTGCTCTAGCTCTTGGCC
TCGGCAGCCCATAATAGCTACGATGGGCATCCAGCAAGAGGACGGTGCTGCGGAGTCGCG
CGTGCTCCTCGCAGGCGCGCGGTCGTCGGAGCACTCGGAGCAGTGGTCCACTGGCATCTT
TGATTGCTTTGCTCAGCCGGGAGGCGCTGCGCTTGGATGCGTTTCCCTGTTCATGCCCTG
CGTCCAGTACGGCGTCGTGGCGGAGACTGTGAACCATGAGGATGTGCCGTGCGGCGGGCA
GTTCGGGCTGGCTGCCGGTACCTTCTTCTGCCTGGAAGTGTTGGCGGGGCTGGCTCAGGC
CTCCCTGTGGCCTGGCATCAGCCTGGTGCCCACCAGCGGTGTGCTGCACTACCGCCTGCG
CCGCCACCTGAGGGACAAGTACCGCATCCAGTGCTCCTGGCAGCGGGACCTGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002036A_C01 KCC002036A_c01
         (475 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF60168.1|AF231333_1 early zygote protein [Chlamydomonas rei...   271  3e-72
gb|AAF60167.1|AF231332_1 early zygote protein [Chlamydomonas rei...   171  5e-42
gb|AAO39872.1| hypothetical protein [Oryza sativa (japonica cult...    46  3e-04
gb|AAO39868.1| unknown protein [Oryza sativa (japonica cultivar-...    44  0.001
ref|NP_172940.1| expressed protein [Arabidopsis thaliana] gi|877...    43  0.002

>gb|AAF60168.1|AF231333_1 early zygote protein [Chlamydomonas reinhardtii]
          Length = 241

 Score =  271 bits (693), Expect = 3e-72
 Identities = 130/131 (99%), Positives = 130/131 (99%)
 Frame = +2

Query: 83  MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA 262
           MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA
Sbjct: 1   MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA 60

Query: 263 ETVNHEDVPCGGQFGLAAGTFFCLEVLAGLAQASLWPGISLVPTSGVLHYRLRRHLRDKY 442
           ETVNHEDVPCGGQFGLAAGTFFCLEVLAGLAQASLWPGISLVPTSGVLHYRLRRHLRDKY
Sbjct: 61  ETVNHEDVPCGGQFGLAAGTFFCLEVLAGLAQASLWPGISLVPTSGVLHYRLRRHLRDKY 120

Query: 443 RIQCSWQRDLC 475
           RIQ SWQRDLC
Sbjct: 121 RIQGSWQRDLC 131

>gb|AAF60167.1|AF231332_1 early zygote protein [Chlamydomonas reinhardtii]
          Length = 81

 Score =  171 bits (432), Expect = 5e-42
 Identities = 81/81 (100%), Positives = 81/81 (100%)
 Frame = +2

Query: 83  MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA 262
           MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA
Sbjct: 1   MGIQQEDGAAESRVLLAGARSSEHSEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVA 60

Query: 263 ETVNHEDVPCGGQFGLAAGTF 325
           ETVNHEDVPCGGQFGLAAGTF
Sbjct: 61  ETVNHEDVPCGGQFGLAAGTF 81

>gb|AAO39872.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|31249732|gb|AAP46224.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 148

 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 22/54 (40%), Positives = 30/54 (54%)
 Frame = +2

Query: 155 SEQWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVAETVNHEDVPCGGQFGLAA 316
           S  WS+G+FDCF   G   L C++ + PC+ +G VAE V+     CG    L A
Sbjct: 16  SAAWSSGLFDCFDDCG---LCCMTCWCPCITFGRVAEIVDRGSTSCGASGALYA 66

>gb|AAO39868.1| unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|31249733|gb|AAP46225.1| unknown protein [Oryza sativa
           (japonica cultivar-group)]
          Length = 141

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +2

Query: 164 WSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVAETVNHEDVPCGGQFGLAA 316
           WSTG+ DCF   G   L C++ + PC+ +G VAE V+     CG    L A
Sbjct: 9   WSTGLLDCFDDCG---LCCMTCWCPCITFGRVAEMVDRGSTSCGTSGALYA 56

>ref|NP_172940.1| expressed protein [Arabidopsis thaliana]
           gi|8778226|gb|AAF79235.1|AC006917_20 F10B6.27
           [Arabidopsis thaliana] gi|18252925|gb|AAL62389.1|
           unknown protein [Arabidopsis thaliana]
           gi|21389643|gb|AAM48020.1| unknown protein [Arabidopsis
           thaliana]
          Length = 152

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 152 HSE-QWSTGIFDCFAQPGGAALGCVSLFMPCVQYGVVAETVNHEDVPCGGQFGLAAGTFF 328
           H+E +WSTG  DCF+        C++ + PC+ +G VAE V+     C    G A   + 
Sbjct: 11  HAEGEWSTGFCDCFSDCKNC---CITFWCPCITFGQVAEIVDRGSTSC----GTAGALYA 63

Query: 329 CLEVLAGLA 355
            + V+ G A
Sbjct: 64  LIAVVTGCA 72



EST assemble image


clone accession position
1 HC053a04_r AV635939 1 393
2 LC044e11_r AV621975 83 513
3 HC099e11_r AV639451 99 579




Chlamydomonas reinhardtii
Kazusa DNA Research Institute