KCC002035A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002035A_C01 KCC002035A_c01
caCTTGTATTTCGTTGCACTCCGCAGCTTTTAAATACCTGTGCTCTTTGTCAGCACAGCG
GCCTGCGCTATCAACGCTTTGCCTGGGCTCGGACCTCCCTTTCCCAGCCTTCTTAAACGC
TCAAAATGGCTCTGGGCCAGCAGGCGATGCAGCGCAAGGGCGCCCTTAACGCCAACAGGG
CCTCGCGCAAGGCTTGCGTCGTCCGCGCGCAGGCGGTTGCCTCGGCTCCCCAACAGCCGG
CCACTGCTTCGCAGTATGTTCCTCACGTCCAGGGCCCGATCATCATGAATGGTCAGGTGC
TGCACAGCATCACGGCTGAGCGCCTGGATGTGGTGCGCAGCCTGGAGGACGGCTACCTGC
AGAGCCAGGTGGTGCCTCTGCTGAAGCCCGTGGAGAAGTGCTGGCAGCCCGCCGACTTCC
TGCCGCCCTCGGAGGACCCCGACTTCCTGGACAAGGTGCGCGAGCTGCGCAAGCGCGCTG
CCAACCTGCCCGATGACTACCTGGTGGTCTTCACCGGCGACATGATCACCGAGGAGTGCG
CTGCCCACCTACATGACCATGCTCAACACCCTGGACGGCTGTTCGCGATGAGACCGGCGC
CAGCCAGACCCCCTGGTGCCAAGTGGACGCGCGAGTGGACCGCCGAGGAGAACCGCCACG
GTGACGTCATGAACCGCTACATGTACCTGACTGGCCGCGTCAACATGAAGGCGGTGGAGG
TGCCTGTGCAGAACCTGATTGGCTCCGGCATGGACCCCAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002035A_C01 KCC002035A_c01
         (761 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM20635.1| putative stearoyl-acyl carrier protein desaturase...   164  1e-39
dbj|BAC06230.1| putative stearoyl-acyl carrier protein desaturas...   163  3e-39
ref|NP_186912.1| acyl-[acyl-carrier-protein] desaturase (stearoy...   162  4e-39
gb|AAM64846.1| putative stearoyl-acyl carrier protein desaturase...   162  4e-39
emb|CAA07350.1| stearoyl-acyl carrier protein desaturase [Linum ...   162  7e-39

>gb|AAM20635.1| putative stearoyl-acyl carrier protein desaturase [Arabidopsis
           thaliana] gi|22136410|gb|AAM91283.1| putative
           stearoyl-acyl carrier protein desaturase [Arabidopsis
           thaliana]
          Length = 396

 Score =  164 bits (415), Expect = 1e-39
 Identities = 94/198 (47%), Positives = 123/198 (61%), Gaps = 3/198 (1%)
 Frame = +3

Query: 177 RASRKACVVRAQAVASAPQQPATASQ-YVPHVQGPIIMNGQVLHSITAERLDVVRSLEDG 353
           R SR + V  A  + SA  +     + Y+P    P  ++ QV HS+  ++LD+ +SLE G
Sbjct: 23  RGSRSSRVSMASTIRSATTEVTNGRKLYIP----PREVHVQVKHSMPPQKLDIFKSLE-G 77

Query: 354 YLQSQVVPLLKPVEKCWQPADFLPPSEDPDFLDKVRELRKRAANLPDDYLVVFTGDMITE 533
           +    ++  LKPVEK WQP DFLP  E   F D+V+ELR+R   LPDDY VV  GDMITE
Sbjct: 78  WADETLLTYLKPVEKSWQPTDFLPEPESEGFYDQVKELRERCKELPDDYFVVLVGDMITE 137

Query: 534 ECAAHLHDHAQHPGRLFAMRPAP-ARP-PGAKWTREWTAEENRHGDVMNRYMYLTGRVNM 707
           E    L  +      L  +R    A P P A WTR WTAEENRHGD++N+Y+YL+GRV+M
Sbjct: 138 EA---LPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM 194

Query: 708 KAVEVPVQNLIGSGMDPK 761
           + +E  +Q LIGSGMDPK
Sbjct: 195 RQIEKTIQYLIGSGMDPK 212

>dbj|BAC06230.1| putative stearoyl-acyl carrier protein desaturase [Oryza sativa
           (japonica cultivar-group)]
          Length = 381

 Score =  163 bits (412), Expect = 3e-39
 Identities = 94/194 (48%), Positives = 117/194 (59%), Gaps = 2/194 (1%)
 Frame = +3

Query: 183 SRKACVVRAQAVASAPQQPATASQYVPHVQGPIIMNGQVLHSITAERLDVVRSLEDGYLQ 362
           SR+ C V A  + +A    AT  +              V HS+  E+ +V RSLE G+ +
Sbjct: 19  SRRQCRVSAAVLTAAETATATRRR--------------VTHSMPPEKAEVFRSLE-GWAR 63

Query: 363 SQVVPLLKPVEKCWQPADFLPPSEDPDFLDKVRELRKRAANLPDDYLVVFTGDMITEECA 542
           S ++PLLKPVE+CWQP DFLP S    F  +V ELR RAA LPD+Y VV  GDMITEE  
Sbjct: 64  SSLLPLLKPVEECWQPTDFLPDSSSEMFEHQVHELRARAAGLPDEYFVVLVGDMITEEA- 122

Query: 543 AHLHDHAQHPGRLFAMR--PAPARPPGAKWTREWTAEENRHGDVMNRYMYLTGRVNMKAV 716
             L  +      L  +R     +  P A WTR WTAEENRHGD++ +YMYL+GRV+M+ V
Sbjct: 123 --LPTYQTMINTLDGVRDETGASACPWAVWTRTWTAEENRHGDILGKYMYLSGRVDMRMV 180

Query: 717 EVPVQNLIGSGMDP 758
           E  VQ LIGSGMDP
Sbjct: 181 EKTVQYLIGSGMDP 194

>ref|NP_186912.1| acyl-[acyl-carrier-protein] desaturase (stearoyl-ACP desaturase),
           putative [Arabidopsis thaliana]
           gi|6957726|gb|AAF32470.1| putative stearoyl-acyl carrier
           protein desaturase [Arabidopsis thaliana]
          Length = 396

 Score =  162 bits (411), Expect = 4e-39
 Identities = 93/198 (46%), Positives = 123/198 (61%), Gaps = 3/198 (1%)
 Frame = +3

Query: 177 RASRKACVVRAQAVASAPQQPATASQ-YVPHVQGPIIMNGQVLHSITAERLDVVRSLEDG 353
           R SR + V  A  + SA  +     + Y+P    P  ++ QV HS+  ++L++ +SLE G
Sbjct: 23  RGSRSSRVSMASTIRSATTEVTNGRKLYIP----PREVHVQVKHSMPPQKLEIFKSLE-G 77

Query: 354 YLQSQVVPLLKPVEKCWQPADFLPPSEDPDFLDKVRELRKRAANLPDDYLVVFTGDMITE 533
           +    ++  LKPVEK WQP DFLP  E   F D+V+ELR+R   LPDDY VV  GDMITE
Sbjct: 78  WADETLLTYLKPVEKSWQPTDFLPEPESEGFYDQVKELRERCKELPDDYFVVLVGDMITE 137

Query: 534 ECAAHLHDHAQHPGRLFAMRPAP-ARP-PGAKWTREWTAEENRHGDVMNRYMYLTGRVNM 707
           E    L  +      L  +R    A P P A WTR WTAEENRHGD++N+Y+YL+GRV+M
Sbjct: 138 EA---LPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM 194

Query: 708 KAVEVPVQNLIGSGMDPK 761
           + +E  +Q LIGSGMDPK
Sbjct: 195 RQIEKTIQYLIGSGMDPK 212

>gb|AAM64846.1| putative stearoyl-acyl carrier protein desaturase [Arabidopsis
           thaliana]
          Length = 396

 Score =  162 bits (411), Expect = 4e-39
 Identities = 93/198 (46%), Positives = 123/198 (61%), Gaps = 3/198 (1%)
 Frame = +3

Query: 177 RASRKACVVRAQAVASAPQQPATASQ-YVPHVQGPIIMNGQVLHSITAERLDVVRSLEDG 353
           R SR + V  A  + SA  +     + Y+P    P  ++ QV HS+  ++L++ +SLE G
Sbjct: 23  RGSRSSRVSMASTIRSATTEVTNGRKLYIP----PREVHVQVKHSMPPQKLEIFKSLE-G 77

Query: 354 YLQSQVVPLLKPVEKCWQPADFLPPSEDPDFLDKVRELRKRAANLPDDYLVVFTGDMITE 533
           +    ++  LKPVEK WQP DFLP  E   F D+V+ELR+R   LPDDY VV  GDMITE
Sbjct: 78  WADETLLTYLKPVEKSWQPTDFLPEPESEGFYDQVKELRERCKELPDDYFVVLVGDMITE 137

Query: 534 ECAAHLHDHAQHPGRLFAMRPAP-ARP-PGAKWTREWTAEENRHGDVMNRYMYLTGRVNM 707
           E    L  +      L  +R    A P P A WTR WTAEENRHGD++N+Y+YL+GRV+M
Sbjct: 138 EA---LPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM 194

Query: 708 KAVEVPVQNLIGSGMDPK 761
           + +E  +Q LIGSGMDPK
Sbjct: 195 RQIEKTIQYLIGSGMDPK 212

>emb|CAA07350.1| stearoyl-acyl carrier protein desaturase [Linum usitatissimum]
          Length = 396

 Score =  162 bits (409), Expect = 7e-39
 Identities = 83/158 (52%), Positives = 108/158 (67%), Gaps = 2/158 (1%)
 Frame = +3

Query: 294 QVLHSITAERLDVVRSLEDGYLQSQVVPLLKPVEKCWQPADFLPPSEDPDFLDKVRELRK 473
           QV HS+  ++L++ +SLE G+ +  ++P LKPVEKCWQP DFLP  E   F ++V+ELR 
Sbjct: 59  QVTHSMPPQKLEIFKSLE-GWAEDVLLPHLKPVEKCWQPQDFLPEPESDGFEEQVKELRA 117

Query: 474 RAANLPDDYLVVFTGDMITEECAAHLHDHAQHPGRLFAMR--PAPARPPGAKWTREWTAE 647
           RA  LPDDY VV  GDMITEE    L  +      L  +R     +  P A WTR WTAE
Sbjct: 118 RAKELPDDYFVVLVGDMITEEA---LPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAE 174

Query: 648 ENRHGDVMNRYMYLTGRVNMKAVEVPVQNLIGSGMDPK 761
           ENRHGD++N+Y+YL+GRV+M+ +E  +Q LIGSGMDPK
Sbjct: 175 ENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPK 212



EST assemble image


clone accession position
1 LCL029g10_r AV627634 1 532
2 MXL002e09_r BP093043 3 391
3 HC052h09_r AV635934 12 537
4 MXL039e11_r BP095299 298 762




Chlamydomonas reinhardtii
Kazusa DNA Research Institute