KCC002034A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002034A_C01 KCC002034A_c01
gtgcacatcggtgtcaGTAGGTCCATACCAACCTTAGGGATTTAGCTGAGCTTCTAACTC
GGCTGAGACATACGGAAGGATGGCAGCACCGAACCCATCCCAACTCGCAGGCGCGCTCGG
CGCGGCTCGCTCTATTGCCAATGTCGTCCTATTTGGTGGCGCGACTCTGTGGGCTGGAGC
GAACAGTCTCTTCAACGTGGAGGGTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGG
CATCAAGGACACGGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCC
CGTGCTTTACGATGTGCGCGCCCGGCCCAGCGTCATCCAGAGCCAGTCGGGAAGCAAGGA
CCTGCAGATGGTGAACGTGGGGCTGCGTGTGCTGACACGCCCCAACGCGGACAAGCTGCC
GGAGATTTACCGCACGCTCGGCACCGACTACGCGGAGCGCGTGCTGCCCTCCATCATCCA
GGAGACGCTCAAGTCGGTCATTGCGCAGTACAACGCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002034A_C01 KCC002034A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus]   197  7e-50
ref|NP_194580.1| prohibitin-related protein [Arabidopsis thalian...   197  9e-50
gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana]         197  9e-50
gb|AAF68384.1|AF236368_1 prohibitin [Zea mays]                        197  9e-50
dbj|BAC84245.1| putative prohibitin [Oryza sativa (japonica cult...   194  7e-49

>gb|AAK07610.1|AF319771_2 prohibitin 1-like protein [Brassica napus]
          Length = 290

 Score =  197 bits (501), Expect = 7e-50
 Identities = 91/133 (68%), Positives = 114/133 (85%)
 Frame = +2

Query: 119 GAARSIANVVLFGGATLWAGANSLFNVEGGHRAIVFNRVVGIKDTVYAEGTHIMVPWFER 298
           GA  ++  + + GG  L+   +SL+NV+GGHRAI+FNR+VG+KD VY EGTH+MVPWFER
Sbjct: 15  GAVSALLKIGIIGGLGLYGATHSLYNVDGGHRAIMFNRLVGVKDKVYPEGTHLMVPWFER 74

Query: 299 PVLYDVRARPSVIQSQSGSKDLQMVNVGLRVLTRPNADKLPEIYRTLGTDYAERVLPSII 478
           PV+YDVRARP +++S SGS+DLQMV +GLRVLTRP AD+LPEIYRTLG +Y+ERVLPSII
Sbjct: 75  PVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRTLGENYSERVLPSII 134

Query: 479 QETLKSVIAQYNA 517
            ETLK+V+AQYNA
Sbjct: 135 HETLKAVVAQYNA 147

>ref|NP_194580.1| prohibitin-related protein [Arabidopsis thaliana]
           gi|7488227|pir||T04622 prohibitin-like protein F20O9.200
           - Arabidopsis thaliana gi|2842494|emb|CAA16891.1|
           prohibitin-like protein [Arabidopsis thaliana]
           gi|4097688|gb|AAD00155.1| prohibitin 1
           gi|4097694|gb|AAD00158.1| prohibitin 1 [Arabidopsis
           thaliana] gi|7269706|emb|CAB81439.1| prohibitin-like
           protein [Arabidopsis thaliana]
           gi|20260658|gb|AAM13227.1| prohibitin-like protein
           [Arabidopsis thaliana] gi|23198006|gb|AAN15530.1|
           prohibitin-like protein [Arabidopsis thaliana]
          Length = 288

 Score =  197 bits (500), Expect = 9e-50
 Identities = 92/133 (69%), Positives = 114/133 (85%)
 Frame = +2

Query: 119 GAARSIANVVLFGGATLWAGANSLFNVEGGHRAIVFNRVVGIKDTVYAEGTHIMVPWFER 298
           GA  ++  V + GG  L+   +SL+NVEGGHRAI+FNR+VGIKD VY EGTH+M+PWFER
Sbjct: 13  GAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPEGTHLMIPWFER 72

Query: 299 PVLYDVRARPSVIQSQSGSKDLQMVNVGLRVLTRPNADKLPEIYRTLGTDYAERVLPSII 478
           PV+YDVRARP +++S SGS+DLQMV +GLRVLTRP AD+LPEIYR+LG +Y+ERVLPSII
Sbjct: 73  PVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGENYSERVLPSII 132

Query: 479 QETLKSVIAQYNA 517
            ETLK+V+AQYNA
Sbjct: 133 NETLKAVVAQYNA 145

>gb|AAM65593.1| prohibitin-like protein [Arabidopsis thaliana]
          Length = 288

 Score =  197 bits (500), Expect = 9e-50
 Identities = 92/133 (69%), Positives = 114/133 (85%)
 Frame = +2

Query: 119 GAARSIANVVLFGGATLWAGANSLFNVEGGHRAIVFNRVVGIKDTVYAEGTHIMVPWFER 298
           GA  ++  V + GG  L+   +SL+NVEGGHRAI+FNR+VGIKD VY EGTH+M+PWFER
Sbjct: 13  GAISTLLKVGIIGGLGLYGATHSLYNVEGGHRAIMFNRLVGIKDKVYPEGTHLMIPWFER 72

Query: 299 PVLYDVRARPSVIQSQSGSKDLQMVNVGLRVLTRPNADKLPEIYRTLGTDYAERVLPSII 478
           PV+YDVRARP +++S SGS+DLQMV +GLRVLTRP AD+LPEIYR+LG +Y+ERVLPSII
Sbjct: 73  PVIYDVRARPYLVESTSGSRDLQMVKIGLRVLTRPMADQLPEIYRSLGENYSERVLPSII 132

Query: 479 QETLKSVIAQYNA 517
            ETLK+V+AQYNA
Sbjct: 133 NETLKAVVAQYNA 145

>gb|AAF68384.1|AF236368_1 prohibitin [Zea mays]
          Length = 289

 Score =  197 bits (500), Expect = 9e-50
 Identities = 90/131 (68%), Positives = 112/131 (84%)
 Frame = +2

Query: 125 ARSIANVVLFGGATLWAGANSLFNVEGGHRAIVFNRVVGIKDTVYAEGTHIMVPWFERPV 304
           A ++  V +FGGA ++A  NSL+NVEGGHRAIVFNR+ GIKD VY EGTH M+PWFERP+
Sbjct: 16  ASALVKVAVFGGAAVYAAVNSLYNVEGGHRAIVFNRIQGIKDKVYPEGTHFMIPWFERPI 75

Query: 305 LYDVRARPSVIQSQSGSKDLQMVNVGLRVLTRPNADKLPEIYRTLGTDYAERVLPSIIQE 484
           +YDVRARP++++S SGS+DLQMV +GLRVLTRP  ++LP IYRTLG ++ ERVLPSII E
Sbjct: 76  IYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPERLPHIYRTLGENFNERVLPSIIHE 135

Query: 485 TLKSVIAQYNA 517
           TLK+V+AQYNA
Sbjct: 136 TLKAVVAQYNA 146

>dbj|BAC84245.1| putative prohibitin [Oryza sativa (japonica cultivar-group)]
          Length = 289

 Score =  194 bits (492), Expect = 7e-49
 Identities = 89/131 (67%), Positives = 111/131 (83%)
 Frame = +2

Query: 125 ARSIANVVLFGGATLWAGANSLFNVEGGHRAIVFNRVVGIKDTVYAEGTHIMVPWFERPV 304
           A ++  +V+ GG  ++A  NSL+NVEGGHRAIVFNR+ GIKD VY EGTH M+PWFERP+
Sbjct: 16  AGTLVKLVVLGGTAVYAAVNSLYNVEGGHRAIVFNRIQGIKDKVYPEGTHFMIPWFERPI 75

Query: 305 LYDVRARPSVIQSQSGSKDLQMVNVGLRVLTRPNADKLPEIYRTLGTDYAERVLPSIIQE 484
           +YDVRARP++++S SGS+DLQMV +GLRVLTRP  +KLP IYRTLG ++ ERVLPSII E
Sbjct: 76  IYDVRARPNLVESTSGSRDLQMVKIGLRVLTRPMPEKLPTIYRTLGENFNERVLPSIIHE 135

Query: 485 TLKSVIAQYNA 517
           TLK+V+AQYNA
Sbjct: 136 TLKAVVAQYNA 146



EST assemble image


clone accession position
1 HC064h11_r AV636842 1 518
2 MX201f08_r BP089149 17 371
3 LC011a05_r AV619631 22 495
4 HC052f02_r AV635912 29 461




Chlamydomonas reinhardtii
Kazusa DNA Research Institute