KCC002028A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC002028A_C01 KCC002028A_c01
CACTAGCCCTGCTAAGGTCTTGCTATTGTTAGCCGGGTCGGCACCGGCTTAGGGCAATAG
CTCTCGCTAATTGGCACAGAGCCGCCTACAACATTTGGTGCCCTAAGAGTGCGCCGAACC
GCTCTCTTAGCAGTTCTTTCTGTTTATCGCGTACCCTGGATTGGCCATCATACCTACGGC
CGTTTCTCTGCGCCGCCTTGCTCCGCCGGTCGACTGTCGACCAATACGGGACCTCAGCGC
CGCACATGTCTCAGGAAGAGGTCGTGCGCGTTACCAAGTTGCTGGAGGGTATCTCTTTCA
GCATCTCGATTAGCACGACGACTACTACGGGTGATGCCCCTTCTGCCGCGGCTGGCGCCG
CCGGCCTGATTCCCGCTGGCGATGCCGCGGCTGGCTCCTCCGGTGCTGCTGGCACCGCTG
GAATGGACGTCGATCTGACGTCCCTGACTACCGAGCAGCAGGGTGCTGCCGTCTCGGCTG
GTGCTGCTGCTGTCGTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002028A_C01 KCC002028A_c01
(497 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir... 46 2e-04
ref|NP_851896.1| very large tegument protein [Cercopithecine her... 46 3e-04
ref|NP_637771.1| cell division protein [Xanthomonas campestris p... 42 0.003
ref|NP_252493.1| hypothetical protein [Pseudomonas aeruginosa PA... 42 0.004
gb|AAG53669.1|AF316149_1 ribosomal protein L19-like protein [Try... 42 0.005
>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
Length = 3326
Score = 46.2 bits (108), Expect = 2e-04
Identities = 34/80 (42%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAG-IRPAAPAAAEGASPVVVVV 314
AAPA AAP + V + PA PAAP PAA A+PA PAAPAA +P V V
Sbjct: 2923 AAPAAPAAPAPAAV-----PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPV 2977
Query: 313 LIEMLKEIPSSNLVTRTTSS 254
++ P++ L TT+S
Sbjct: 2978 VV----PAPTATLTATTTTS 2993
Score = 39.7 bits (91), Expect = 0.021
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAAAEGASPVVV 320
AAPA AAP + + PA PAAP PAA A+PA PAAPAA +P V
Sbjct: 2887 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAPAAV 2936
Score = 37.0 bits (84), Expect = 0.13
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAAAEGA 335
AAPA AAP + + PA PAAP PAA A+PA PAA AA A
Sbjct: 2896 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAAPAPAAVPAAPAA 2942
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2857 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2904
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2866 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2913
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2869 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2916
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2863 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2910
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2875 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2922
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2872 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2919
Score = 36.6 bits (83), Expect = 0.17
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2860 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2907
Score = 36.2 bits (82), Expect = 0.23
Identities = 28/55 (50%), Positives = 32/55 (57%), Gaps = 2/55 (3%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPA-AAEGASP 329
AAPA AAP + + PA PAAP PAA A+PA PAAPA AA A+P
Sbjct: 2893 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAPAAVPAAP 2940
Score = 36.2 bits (82), Expect = 0.23
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
T AAA +A P + + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2843 TVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2898
Score = 33.5 bits (75), Expect = 1.5
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTS--IPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
T P A P +V R+++ PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2829 TGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2886
>ref|NP_851896.1| very large tegument protein [Cercopithecine herpesvirus 1]
gi|30844278|gb|AAP41454.1| very large tegument protein
[Cercopithecine herpesvirus 1]
Length = 3288
Score = 45.8 bits (107), Expect = 3e-04
Identities = 33/79 (41%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAAAEGASPVVVVVL 311
AAPA AAP + + PA PAAP PAA A+PA PAAPAA +P V V+
Sbjct: 2888 AAPAAPAAPAAPA-----APAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAPAAVPVV 2940
Query: 310 IEMLKEIPSSNLVTRTTSS 254
+ P++ L TT+S
Sbjct: 2941 V----PAPTATLTATTTTS 2955
Score = 36.2 bits (82), Expect = 0.23
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
T AAA +A P + + + PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2853 TVAAAGRASAPPAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2908
Score = 33.5 bits (75), Expect = 1.5
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTS--IPAVPAAPEEPAA-ASPAGIRPAAPAA-AEGASP 329
T P A P +V R+++ PA PAAP PAA A+PA PAAPAA A A+P
Sbjct: 2839 TGPTRPTSPATPTPTVAAAGRASAPPAPAAPAAPAAPAAPAAPAA--PAAPAAPAAPAAP 2896
>ref|NP_637771.1| cell division protein [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|21113573|gb|AAM41695.1| cell division
protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
Length = 546
Score = 42.4 bits (98), Expect = 0.003
Identities = 28/64 (43%), Positives = 38/64 (58%), Gaps = 4/64 (6%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIR----PAAPAAAEGASP 329
T AAPAE A + R ++ SI AVP+AP AA+P+ ++ P AP+A A+P
Sbjct: 87 TAPAAPAEQLAQDIAA-RTGQAQSIAAVPSAPTPAPAAAPSALQALPDPVAPSAPATATP 145
Query: 328 VVVV 317
VVVV
Sbjct: 146 VVVV 149
Score = 33.9 bits (76), Expect = 1.1
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 496 TTAAAPAETAAPCCSVVRDVRSTSIPAVP-AAPEEPAAASPAGIRPAAPA 350
T AA PA T P S + + P P AAP PAA +P PAAPA
Sbjct: 50 TPAAPPAPTQTPPAS------APTTPVAPVAAPSTPAAETPTPTAPAAPA 93
>ref|NP_252493.1| hypothetical protein [Pseudomonas aeruginosa PA01]
gi|11350002|pir||G83171 hypothetical protein PA3804
[imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9949977|gb|AAG07191.1|AE004798_14 hypothetical
protein PA3804 [Pseudomonas aeruginosa PAO1]
Length = 347
Score = 42.0 bits (97), Expect = 0.004
Identities = 25/56 (44%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPA---APAAAEGASP 329
AA AE A P S V + PAAP++P A+PAG PA APA ASP
Sbjct: 194 AAQAEGAPPVASEGAQVPAAPAQGTPAAPQQPVTAAPAGTAPAPGTAPAVPATASP 249
Score = 33.5 bits (75), Expect = 1.5
Identities = 25/70 (35%), Positives = 32/70 (45%)
Frame = -2
Query: 487 AAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASPVVVVVLI 308
AAPA TA P V +T+ PA P AP EPAA A A EG V V +
Sbjct: 228 AAPAGTA-PAPGTAPAVPATASPAAPPAPSEPAA--------APVVAGEGQGVVKVQFVA 278
Query: 307 EMLKEIPSSN 278
+ ++ +N
Sbjct: 279 DCWTQVTDAN 288
>gb|AAG53669.1|AF316149_1 ribosomal protein L19-like protein [Trypanosoma cruzi]
Length = 356
Score = 41.6 bits (96), Expect = 0.005
Identities = 25/55 (45%), Positives = 31/55 (55%)
Frame = -2
Query: 493 TAAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
TAAAPA+ AAP + ++ + PA AAP AAA PA + AAP A A P
Sbjct: 239 TAAAPAKAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA--KAAAPPAKAAAPP 291
Score = 38.1 bits (87), Expect = 0.060
Identities = 25/56 (44%), Positives = 32/56 (56%), Gaps = 1/56 (1%)
Frame = -2
Query: 490 AAAPAETAA-PCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASPV 326
AAAPA+TAA P + ++ + PA AAP AA PA + AAP A A+PV
Sbjct: 295 AAAPAKTAAPPAKAAAAPAKTAAPPAKTAAPPAKAATPPA--KAAAPPAKAAAAPV 348
Score = 37.7 bits (86), Expect = 0.078
Identities = 24/54 (44%), Positives = 27/54 (49%)
Frame = -2
Query: 490 AAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AAAPA+ AAP + PA AAP AAA PA + AAP A A P
Sbjct: 226 AAAPAKAAAPPAKTAAAPAKAAAPAKAAAPPAKAAAPPA--KAAAPPAKAAAPP 277
Score = 35.8 bits (81), Expect = 0.30
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Frame = -2
Query: 490 AAAPAETAA-PCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AAAPA+ AA P + ++ + PA AAP AAA PA + AAP A A+P
Sbjct: 246 AAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA--KAAAPPAKAAAAP 298
Score = 34.7 bits (78), Expect = 0.66
Identities = 23/55 (41%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Frame = -2
Query: 490 AAAPAETAA-PCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AA PA+ AA P + ++ + PA AAP AAA+PA + AAP A A+P
Sbjct: 260 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPA--KTAAPPAKAAAAP 312
Score = 34.3 bits (77), Expect = 0.86
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = -2
Query: 490 AAAPAETAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AA PA+ AAP ++ + PA AAP AAA+PA + AAP A A P
Sbjct: 281 AAPPAKAAAP------PAKAAAAPAKTAAPPAKAAAAPA--KTAAPPAKTAAPP 326
Score = 33.1 bits (74), Expect = 1.9
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 490 AAAPAETAAPCCSVVRD-VRSTSIPAVPAAPEEPAAASPAG 371
AAAPA+TAAP ++ + PA AAP AAA+P G
Sbjct: 309 AAAPAKTAAPPAKTAAPPAKAATPPAKAAAPPAKAAAAPVG 349
Score = 32.3 bits (72), Expect = 3.3
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
Frame = -2
Query: 490 AAAPAETAA-PCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AAAPA+ AA P + ++ + PA AAP + AAA PA + AAP A A P
Sbjct: 219 AAAPAKAAAAPAKAAAPPAKTAAAPAKAAAPAK-AAAPPA--KAAAPPAKAAAPP 270
Score = 31.2 bits (69), Expect = 7.3
Identities = 23/55 (41%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Frame = -2
Query: 490 AAAPAE-TAAPCCSVVRDVRSTSIPAVPAAPEEPAAASPAGIRPAAPAAAEGASP 329
AAAP TAA ++ + PA AAP AAA PA + AAP A A P
Sbjct: 232 AAAPPAKTAAAPAKAAAPAKAAAPPAKAAAPPAKAAAPPA--KAAAPPAKAAAPP 284
EST assemble image
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clone |
accession |
position |
| 1 |
HC051c08_r |
AV635811 |
1 |
601 |
| 2 |
LC036h09_r |
AV621497 |
101 |
447 |
| 3 |
MXL006b08_r |
BP093284 |
136 |
322 |
| 4 |
HC092d11_r |
AV638908 |
183 |
513 |
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Chlamydomonas reinhardtii
Kazusa DNA Research Institute