KCC002025A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002025A_C01 KCC002025A_c01
CAAAGATGGCTAAGCATCCATACTTTCCCCTTGACCTGGAGCTGCCGGGCTTCGTGCCCA
ACATCATCCCCTATGAAACCATCCTCACTGTCTTCTTTGGCAGCTCGGCCCTGGTGGTCA
TCTTCATGTTTTTGCTTACAGGCCGCTTCAAGTACCTGAGCTCCGTGGAGCGTCTGTGGG
CTGGCTGGTGGATGGTGACGGGCATCATTCACTTCGTCATTGAAGGGACCGTCGTGGCCA
ACGCCAACTTCTACAAGGATACCACCGGAAACATTCTCAATGAGATCTGGAAGGAGTACG
CCAAGGCGGACTCGCGCTACGCCACGCGCGACGCCTTCATTGTGCAGATGGAGGGCGTGA
CCGCCTTCATCTGGGGCCCCATCTGCTTCGCCATTGTGTACGGCATCCTGCACCGCAAGG
CCTGGCGCTTCACGGCCATGCTGCTGGTGTCGCTGGGGCAGCTAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002025A_C01 KCC002025A_c01
         (465 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM63292.1| C-8,7 sterol isomerase [Arabidopsis thaliana]          134  4e-31
ref|NP_173433.1| C-8,7 sterol isomerase [Arabidopsis thaliana] g...   134  5e-31
gb|AAD04752.1| phenylalkylamine binding protein homolog [Arabido...   134  5e-31
sp|Q9FTZ2|EBP_ORYSA Probable 3-beta-hydroxysteroid-delta(8),delt...   120  6e-27
ref|NP_006570.1| emopamil binding protein (sterol isomerase); Ch...   112  2e-24

>gb|AAM63292.1| C-8,7 sterol isomerase [Arabidopsis thaliana]
          Length = 223

 Score =  134 bits (338), Expect = 4e-31
 Identities = 65/154 (42%), Positives = 95/154 (61%)
 Frame = +3

Query: 3   KMAKHPYFPLDLELPGFVPNIIPYETILTVFFGSSALVVIFMFLLTGRFKYLSSVERLWA 182
           K   HPY P DL LPG+VP  +   +I++++ GSS LVV  ++LL GR K  + +++L  
Sbjct: 2   KELAHPYVPRDLNLPGYVPISMSMSSIVSIYLGSSLLVVSLVWLLFGRKK--AKLDKLLM 59

Query: 183 GWWMVTGIIHFVIEGTVVANANFYKDTTGNILNEIWKEYAKADSRYATRDAFIVQMEGVT 362
            WW  TG+ H ++EG  V +  F+KD T   L E+WKEY+K DSRY  RD+ +V +EG+T
Sbjct: 60  CWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRDSAVVSVEGIT 119

Query: 363 AFIWGPICFAIVYGILHRKAWRFTAMLLVSLGQL 464
           A I GP     +Y I   K++ +   L +S+ QL
Sbjct: 120 AVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQL 153

>ref|NP_173433.1| C-8,7 sterol isomerase [Arabidopsis thaliana]
           gi|18202046|sp|O48962|EBP_ARATH Probable
           3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
           (Cholestenol delta-isomerase) (Delta8-delta7 sterol
           isomerase) (D8-D7 sterol isomerase)
           gi|11279073|pir||T51727 C-8,7 sterol isomerase
           [validated] - Arabidopsis thaliana
           gi|2772934|gb|AAD03489.1| C-8,7 sterol isomerase; aSI1
           [Arabidopsis thaliana]
           gi|8778994|gb|AAF79909.1|AC022472_18 Identical to C-8,7
           sterol isomerase from Arabidopsis thaliana gb|AF030357. 
           ESTs gb|AI998831, gb|AA585846, gb|T22967 come from this
           gene gi|12248039|gb|AAG50111.1|AF334733_1 putative C-8,7
           sterol isomerase [Arabidopsis thaliana]
          Length = 223

 Score =  134 bits (337), Expect = 5e-31
 Identities = 64/150 (42%), Positives = 94/150 (62%)
 Frame = +3

Query: 15  HPYFPLDLELPGFVPNIIPYETILTVFFGSSALVVIFMFLLTGRFKYLSSVERLWAGWWM 194
           HPY P DL LPG+VP  +   +I++++ GSS LVV  ++LL GR K  + +++L   WW 
Sbjct: 6   HPYVPRDLNLPGYVPISMSMSSIVSIYLGSSLLVVSLVWLLFGRKK--AKLDKLLMCWWT 63

Query: 195 VTGIIHFVIEGTVVANANFYKDTTGNILNEIWKEYAKADSRYATRDAFIVQMEGVTAFIW 374
            TG+ H ++EG  V +  F+KD T   L E+WKEY+K DSRY  RD+ +V +EG+TA I 
Sbjct: 64  FTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRDSAVVSVEGITAVIV 123

Query: 375 GPICFAIVYGILHRKAWRFTAMLLVSLGQL 464
           GP     +Y I   K++ +   L +S+ QL
Sbjct: 124 GPASLLAIYAIAKEKSYSYVLQLAISVCQL 153

>gb|AAD04752.1| phenylalkylamine binding protein homolog [Arabidopsis thaliana]
          Length = 223

 Score =  134 bits (337), Expect = 5e-31
 Identities = 64/150 (42%), Positives = 94/150 (62%)
 Frame = +3

Query: 15  HPYFPLDLELPGFVPNIIPYETILTVFFGSSALVVIFMFLLTGRFKYLSSVERLWAGWWM 194
           HPY P DL LPG+VP  +   +I++++ GSS LVV  ++LL GR K  + +++L   WW 
Sbjct: 6   HPYVPRDLNLPGYVPISMSMSSIVSIYLGSSLLVVSLVWLLFGRKK--AKLDKLLMCWWT 63

Query: 195 VTGIIHFVIEGTVVANANFYKDTTGNILNEIWKEYAKADSRYATRDAFIVQMEGVTAFIW 374
            TG+ H ++EG  V +  F+KD T   L E+WKEY+K DSRY  RD+ +V +EG+TA I 
Sbjct: 64  FTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRDSAVVSVEGITAVIV 123

Query: 375 GPICFAIVYGILHRKAWRFTAMLLVSLGQL 464
           GP     +Y I   K++ +   L +S+ QL
Sbjct: 124 GPASLLAIYAIAKEKSYSYVLQLAISVCQL 153

>sp|Q9FTZ2|EBP_ORYSA Probable 3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
           (Cholestenol delta-isomerase) (Delta8-delta7 sterol
           isomerase) (D8-D7 sterol isomerase)
           gi|10697192|dbj|BAB16323.1| putative C-8,7 sterol
           isomerase [Oryza sativa (japonica cultivar-group)]
           gi|20804451|dbj|BAB92148.1| putative C-8,7 sterol
           isomerase [Oryza sativa (japonica cultivar-group)]
          Length = 219

 Score =  120 bits (302), Expect = 6e-27
 Identities = 60/151 (39%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
 Frame = +3

Query: 15  HPYFPLDLELPGFVPNIIPYETILTVFFGSSALVVIFMFLLTGRF-KYLSSVERLWAGWW 191
           HPY P +L LPGFVP  +    IL  +  +S  +++ ++L++GR  + LS  +R    WW
Sbjct: 7   HPYAPAELHLPGFVPLQLSQAQILVPYLATSLFLLLAVWLISGRCSRRLSDTDRWLMCWW 66

Query: 192 MVTGIIHFVIEGTVVANANFYKDTTGNILNEIWKEYAKADSRYATRDAFIVQMEGVTAFI 371
             TG+ H +IEGT V   NF+ +   +  +E+WKEY+K DSRY  RD   V +EG+TA +
Sbjct: 67  AFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGDSRYVARDPATVTVEGITAVL 126

Query: 372 WGPICFAIVYGILHRKAWRFTAMLLVSLGQL 464
            GP     VY I   K++       V LGQL
Sbjct: 127 EGPASLLAVYAIASGKSYSHILQFTVCLGQL 157

>ref|NP_006570.1| emopamil binding protein (sterol isomerase); Chondrodysplasia
           punctata-2, X-linked dominant (Happle syndrome);
           emopamil-binding protein (sterol isomerase);
           3-beta-hydroxysteroid-delta-8,delta-7-isomerase; sterol
           8-isomerase [Homo sapiens]
           gi|17374795|sp|Q15125|EBP_HUMAN
           3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
           (Cholestenol delta-isomerase) (Delta8-delta7 sterol
           isomerase) (D8-D7 sterol isomerase) (Emopamil binding
           protein) gi|1362793|pir||B56122 emopamil-binding protein
           - human gi|780263|emb|CAA86068.1| phenylalkylamine
           binding protein [Homo sapiens]
           gi|6289071|gb|AAF06799.1|AF196972_4 phenylalkylamine
           binding protein [Homo sapiens]
           gi|6289074|gb|AAF06801.1|AF196969_1 phenylalkylamine
           binding protein [Homo sapiens]
           gi|16306735|gb|AAH01549.1| Emopamil binding protein
           (sterol isomerase) [Homo sapiens]
           gi|16306768|gb|AAH01572.1| Emopamil binding protein
           (sterol isomerase) [Homo sapiens]
           gi|28277024|gb|AAH46501.1| EBP protein [Homo sapiens]
          Length = 230

 Score =  112 bits (280), Expect = 2e-24
 Identities = 65/154 (42%), Positives = 88/154 (56%), Gaps = 4/154 (2%)
 Frame = +3

Query: 15  HPYFPLDLELPGFVPNIIPYETILTVFFGSSALVVIFMFLLTGRFKY--LSSVERLWAGW 188
           HPY+P  L L  FVPN  P   IL   F  + ++V+  +LL+GR     L +  RL   W
Sbjct: 9   HPYWPQHLRLDNFVPNDRPTWHILAGLFSVTGVLVVTTWLLSGRAAVVPLGTWRRLSLCW 68

Query: 189 WMVTGIIHFVIEGTVVANANFYKDTTGN--ILNEIWKEYAKADSRYATRDAFIVQMEGVT 362
           + V G IH VIEG  V    +Y+D  G+   L+++WKEYAK DSRY   D F V ME +T
Sbjct: 69  FAVCGFIHLVIEGWFVL---YYEDLLGDQAFLSQLWKEYAKGDSRYILGDNFTVCMETIT 125

Query: 363 AFIWGPICFAIVYGILHRKAWRFTAMLLVSLGQL 464
           A +WGP+   +V   L +   RF   L+VS+GQ+
Sbjct: 126 ACLWGPLSLWVVIAFLRQHPLRFILQLVVSVGQI 159



EST assemble image


clone accession position
1 MX224c10_r BP090465 1 501
2 LC070f11_r AV623938 118 546
3 HC050d03_r AV635744 118 575
4 MX017c04_r BP086808 119 503
5 MX036b12_r BP087515 119 474




Chlamydomonas reinhardtii
Kazusa DNA Research Institute