KCC002022A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002022A_C01 KCC002022A_c01
ctgcctgaggttggggctgatggagatgaaaaacaggagccattttcataaaagaaaact
ttttgagctttacggtacagAAAAGCGAGGCTAGGACAATTGACGTGTTCTACAGCTGAG
CCAAATTCATGGCCTATGTAGTTGTTGCTCTACAAAGGCTGTTACTTGACGACTTCGTCA
TTCTTCAACATAGCTCCTTCTGTCGTTCCGATACCCGAAGCACTATATAGATGGCATCCC
AAGGCTTTGCGATGCCACGACTCACTTTCGGGCGCGACATTGTGGCGAGTAAGCCCTGCG
CAGCACTGGGCTTGCGGCGGGCTCCCGCATGCCCCCGAGTAGCGCCCGGCCGGGCTGAGC
AGCAGCCGCGCAAGCACCTGGAGCCCGTGCACGTAGCTCAGGCACCCCTCTCGTCTTCCA
CAACGACAAATGGCACACACAGCGCACCCGCCCCGGTTGCTTCGACCTCATCTCGGGACG
CGAGCGAGGCTGCCGCTGCTTCTGCGCTCTCGGCAAACCTTCTACTGATCTGCCCTGACC
AGAAGGGCGTGATTGCTGCTGTGAGCCAGCTTCTGTATGGCTTCGGCTGCAACATCGTCG
CTTCGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002022A_C01 KCC002022A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF27637.1|AF217281_1 ecdysone-inducible gene E1 [Drosophila ...    41  0.015
ref|NP_524849.2| Ecdysone-inducible gene E1 CG32356-PA [Drosophi...    41  0.015
ref|NP_693614.1| formyltetrahydrofolate deformylase [Oceanobacil...    40  0.034
ref|ZP_00023064.1| COG0788: Formyltetrahydrofolate hydrolase [Ra...    39  0.044
ref|NP_825023.1| putative formyltetrahydrofolate deformylase [St...    38  0.13

>gb|AAF27637.1|AF217281_1 ecdysone-inducible gene E1 [Drosophila melanogaster]
          Length = 1616

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 30/85 (35%), Positives = 40/85 (46%)
 Frame = +3

Query: 246 FAMPRLTFGRDIVASKPCAALGLRRAPACPRVAPGRAEQQPRKHLEPVHVAQAPLSSSTT 425
           F +P L FGR    S      GL  APA        A+Q+ +K  + V   + P SS+TT
Sbjct: 158 FLIPNL-FGRCQCTSPAKMVGGLCVAPA--------ADQEDQKQEQAVEKVEQPASSTTT 208

Query: 426 TNGTHSAPAPVASTSSRDASEAAAA 500
           T  T + P P   T+SR  +   AA
Sbjct: 209 TTTTTTTPRPTTRTTSRTTTTTTAA 233

>ref|NP_524849.2| Ecdysone-inducible gene E1 CG32356-PA [Drosophila melanogaster]
           gi|23093901|gb|AAF50429.2| CG32356-PA [Drosophila
           melanogaster]
          Length = 1616

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 30/85 (35%), Positives = 40/85 (46%)
 Frame = +3

Query: 246 FAMPRLTFGRDIVASKPCAALGLRRAPACPRVAPGRAEQQPRKHLEPVHVAQAPLSSSTT 425
           F +P L FGR    S      GL  APA        A+Q+ +K  + V   + P SS+TT
Sbjct: 158 FLIPNL-FGRCQCTSPAKMVGGLCVAPA--------ADQEDQKQEQAVEKVEQPASSTTT 208

Query: 426 TNGTHSAPAPVASTSSRDASEAAAA 500
           T  T + P P   T+SR  +   AA
Sbjct: 209 TTTTTTTPRPTTRTTSRTTTTTTAA 233

>ref|NP_693614.1| formyltetrahydrofolate deformylase [Oceanobacillus iheyensis
           HTE831] gi|22778380|dbj|BAC14649.1|
           formyltetrahydrofolate deformylase [Oceanobacillus
           iheyensis HTE831]
          Length = 300

 Score = 39.7 bits (91), Expect = 0.034
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +3

Query: 513 ANLLLICPDQKGVIAAVSQLLYGFGCNIVAS 605
           A LL+ CPD++G++AAVS  L+  G NIVAS
Sbjct: 20  ARLLIKCPDKQGIVAAVSTFLHEQGANIVAS 50

>ref|ZP_00023064.1| COG0788: Formyltetrahydrofolate hydrolase [Ralstonia metallidurans]
          Length = 288

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +3

Query: 519 LLLICPDQKGVIAAVSQLLYGFGCNIVAS 605
           L L CPDQ G++ AVS LL+  GCNIV S
Sbjct: 8   LTLSCPDQPGIVHAVSGLLFQHGCNIVDS 36

>ref|NP_825023.1| putative formyltetrahydrofolate deformylase [Streptomyces
           avermitilis MA-4680] gi|29607500|dbj|BAC71558.1|
           putative formyltetrahydrofolate deformylase
           [Streptomyces avermitilis MA-4680]
          Length = 293

 Score = 37.7 bits (86), Expect = 0.13
 Identities = 19/40 (47%), Positives = 25/40 (62%)
 Frame = +3

Query: 477 DASEAAAASALSANLLLICPDQKGVIAAVSQLLYGFGCNI 596
           + S  AAA A    L L CPD++G++ AVS  L+  GCNI
Sbjct: 3   EQSVRAAAPAEQYVLTLSCPDKQGIVHAVSSYLFMTGCNI 42



EST assemble image


clone accession position
1 MXL081c01_r BP097780 1 389
2 HC050b09_r AV635729 153 590
3 HC093d06_r AV638982 160 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute