>KCC002021A_C01 KCC002021A_c01
CAAATAACTTCGGGGTTTGGTCATTAGCAAGTCCTTGACATAATGCAGAGCAGCATGCGT
GCCCGTGTGGCGGGTGGTGCTCGCCGCGCGGTGGGCACTGCTGGCCGTCGCCTGACTGTG
AAGGTCATGAACTCGAACGTGCTGATCGCCAACACCAAGGGCGGTGGCCACGCGTTCATT
GGTCTGTACCTGGCGAAGGAGCTGCTGAAGAAGGGCCACAAGGTCACCATCATGAACGAT
GGTGACTCGGACAAGCTCACCAAGAAGAACCCTTACGCCAAGTACTCGGACCTGGAGCGC
CAGGGCCTGAACGTCGTCTGGGCCGACCCCGCCAAGCCGTCGACCTACCCTCGCGGCACC
TTTGACGTGGTGTATGACAACAACGGCAAGGACCTGGCAAGCTGCCAGCCCCTGATCGAC
CACTTCAAGCACAAGGTGGATCACTACGTGTTCGTGTCCTCGGCCGGCGCCTACAAGGCC
GACCCCATCGAGCCCATGCACGTGGAGGGCGATGCGCGCAAGTCCACCGCCGGGCACGTG
GAGGT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002021A_C01 KCC002021A_c01
         (545 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO22241.1| 41 kDa ribosome-associated protein precursor [Chl...   340  1e-92
dbj|BAC83225.1| putative mRNA binding protein precursor [Oryza s...   132  4e-30
ref|NP_191873.1| mRNA binding protein precursor - like [Arabidop...   129  3e-29
gb|AAD21574.3| mRNA binding protein precursor [Lycopersicon escu...   122  3e-27
pir||T52071 mRNA-binding protein precursor [imported] - tomato  ...   122  3e-27

>gb|AAO22241.1| 41 kDa ribosome-associated protein precursor [Chlamydomonas
           reinhardtii]
          Length = 439

 Score =  340 bits (871), Expect = 1e-92
 Identities = 166/167 (99%), Positives = 166/167 (99%)
 Frame = +1

Query: 43  MQSSMRARVAGGARRAVGTAGRRLTVKVMNSNVLIANTKGGGHAFIGLYLAKELLKKGHK 222
           MQSSMRARVAGGARRAVGTAGRRLTVKVMNSNVLIANTKGGGHAFIGLYLAKELLKKGHK
Sbjct: 1   MQSSMRARVAGGARRAVGTAGRRLTVKVMNSNVLIANTKGGGHAFIGLYLAKELLKKGHK 60

Query: 223 VTIMNDGDSDKLTKKNPYAKYSDLERQGLNVVWADPAKPSTYPRGTFDVVYDNNGKDLAS 402
           VTIMNDGDSDKLTKKNPYAKYSDLERQGLNVVWADPAKPSTYPRGTFDVVYDNNGKDLAS
Sbjct: 61  VTIMNDGDSDKLTKKNPYAKYSDLERQGLNVVWADPAKPSTYPRGTFDVVYDNNGKDLAS 120

Query: 403 CQPLIDHFKHKVDHYVFVSSAGAYKADPIEPMHVEGDARKSTAGHVE 543
           CQPLIDHFKHKVDHYVFVSSAGAYKADPIEPMHVEGD RKSTAGHVE
Sbjct: 121 CQPLIDHFKHKVDHYVFVSSAGAYKADPIEPMHVEGDPRKSTAGHVE 167

>dbj|BAC83225.1| putative mRNA binding protein precursor [Oryza sativa (japonica
           cultivar-group)]
          Length = 392

 Score =  132 bits (331), Expect = 4e-30
 Identities = 81/171 (47%), Positives = 102/171 (59%), Gaps = 7/171 (4%)
 Frame = +1

Query: 49  SSMRARVAGGARRAVG--TAGRRLTVKVMNSNVLIANTKGGGHAFIGLYLAKELLKKGHK 222
           ++ R   A  A R VG  T   +        +VLI NT GGGHA IG YLAK+LL  GH 
Sbjct: 41  AARRCGEAAAAPRRVGAVTVRAQAAAGAGKKSVLIVNTNGGGHAVIGFYLAKDLLAAGHA 100

Query: 223 VTIMNDGD--SDKLTKKNPYAKYSDLERQGLNVVWADPAKPSTYPRG--TFDVVYDNNGK 390
           VT++  GD  SDK+ KK P++++S+L   G   VW DPA       G  +FDVV DNNGK
Sbjct: 101 VTVLTVGDEGSDKM-KKPPFSRFSELTSAGATTVWGDPADVGAAVGGGASFDVVLDNNGK 159

Query: 391 DLASCQPLIDHFKHK-VDHYVFVSSAGAYKADPIEPMHVEGDARKSTAGHV 540
           DL + +P++D  K   V  ++FVSSAG Y     EP HVEGDA K +AGHV
Sbjct: 160 DLDAVKPVVDWAKAAGVAQFLFVSSAGIYTPSD-EPPHVEGDAVKESAGHV 209

>ref|NP_191873.1| mRNA binding protein precursor - like [Arabidopsis thaliana]
           gi|11358514|pir||T48103 mRNA binding protein CSP41
           homolog T20O10.240 [similarity] - Arabidopsis thaliana
           gi|7573443|emb|CAB87759.1| mRNA binding protein
           precursor-like [Arabidopsis thaliana]
           gi|16226201|gb|AAL16101.1|AF428269_1
           AT3g63140/T20O10_240 [Arabidopsis thaliana]
           gi|16649035|gb|AAL24369.1| mRNA binding protein
           precursor-like [Arabidopsis thaliana]
           gi|22136252|gb|AAM91204.1| mRNA binding protein
           precursor-like [Arabidopsis thaliana]
          Length = 406

 Score =  129 bits (324), Expect = 3e-29
 Identities = 78/176 (44%), Positives = 104/176 (58%), Gaps = 7/176 (3%)
 Frame = +1

Query: 34  LDIMQSSMRARVAGGARRAVGTAGRRLTVKVMN----SNVLIANTKGGGHAFIGLYLAKE 201
           L    SS  + +    R +   + ++ TVK  +     NVLI NT  GGHA IG Y AKE
Sbjct: 43  LSSSSSSSSSLLTFSLRTSRRLSPQKFTVKASSVGEKKNVLIVNTNSGGHAVIGFYFAKE 102

Query: 202 LLKKGHKVTIMNDGD-SDKLTKKNPYAKYSDLERQGLNVVWADPAKPSTYPRG-TFDVVY 375
           LL  GH VTI+  GD S +  KK P+ ++S++   G   VW +PA  +    G TFDVV 
Sbjct: 103 LLSAGHAVTILTVGDESSEKMKKPPFNRFSEIVSGGGKTVWGNPANVANVVGGETFDVVL 162

Query: 376 DNNGKDLASCQPLIDHFKHK-VDHYVFVSSAGAYKADPIEPMHVEGDARKSTAGHV 540
           DNNGKDL + +P++D  K   V  ++F+SSAG YK+   +P HVEGDA K+ AGHV
Sbjct: 163 DNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIYKSTE-QPPHVEGDAVKADAGHV 217

>gb|AAD21574.3| mRNA binding protein precursor [Lycopersicon esculentum]
          Length = 407

 Score =  122 bits (306), Expect = 3e-27
 Identities = 71/143 (49%), Positives = 86/143 (59%), Gaps = 4/143 (2%)
 Frame = +1

Query: 124 VMNSNVLIANTKGGGHAFIGLYLAKELLKKGHKVTIMNDGD--SDKLTKKNPYAKYSDLE 297
           V    VLI NT  GGHA IG Y AKELL  GH VT++  G+  SDK+ KK P+ ++S++ 
Sbjct: 78  VEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVGEESSDKM-KKTPFTRFSEIT 136

Query: 298 RQGLNVVWADPAKPSTYPRG-TFDVVYDNNGKDLASCQPLIDHFKHK-VDHYVFVSSAGA 471
             G   VW +PA       G  FD V DNNGKDL S  P+ D  K   V  ++F+SSAG 
Sbjct: 137 GAGGRTVWGNPADVGKILEGEVFDAVLDNNGKDLDSVSPVADWAKSSGVKQFLFISSAGI 196

Query: 472 YKADPIEPMHVEGDARKSTAGHV 540
           YK    EP HVEGDA K+ AGHV
Sbjct: 197 YKPTD-EPPHVEGDAVKADAGHV 218

>pir||T52071 mRNA-binding protein precursor [imported] - tomato  (fragment)
          Length = 418

 Score =  122 bits (306), Expect = 3e-27
 Identities = 71/143 (49%), Positives = 86/143 (59%), Gaps = 4/143 (2%)
 Frame = +1

Query: 124 VMNSNVLIANTKGGGHAFIGLYLAKELLKKGHKVTIMNDGD--SDKLTKKNPYAKYSDLE 297
           V    VLI NT  GGHA IG Y AKELL  GH VT++  G+  SDK+ KK P+ ++S++ 
Sbjct: 89  VEKKKVLIVNTNSGGHAVIGFYFAKELLGSGHDVTVLTVGEESSDKM-KKTPFTRFSEIT 147

Query: 298 RQGLNVVWADPAKPSTYPRG-TFDVVYDNNGKDLASCQPLIDHFKHK-VDHYVFVSSAGA 471
             G   VW +PA       G  FD V DNNGKDL S  P+ D  K   V  ++F+SSAG 
Sbjct: 148 GAGGRTVWGNPADVGKILEGEVFDAVLDNNGKDLDSVSPVADWAKSSGVKQFLFISSAGI 207

Query: 472 YKADPIEPMHVEGDARKSTAGHV 540
           YK    EP HVEGDA K+ AGHV
Sbjct: 208 YKPTD-EPPHVEGDAVKADAGHV 229

EST assemble image

clone accession position 1 MX042b12_r BP087718 1 458 2 MX228a05_r BP090716 99 504 3 HCL023f03_r AV640858 100 473 4 MX037f09_r BP087569 101 464 5 HC050b03_r AV635725 101 555 6 HC055b01_r AV636094 106 614 7 MX055e02_r BP088255 108 447 8 HC069h10_r AV637187 108 623 9 HC053d03_r AV635961 110 404 10 HC081h07_r AV638097 110 525 11 HC060c10_r AV636499 110 549 12 HCL066a06_r AV643229 111 592 13 HCL043h05_r AV642011 111 607 14 HCL007f03_r AV639940 122 553 15 HC087h01_r AV638553 122 527 16 MX211c11_r BP089646 335 649

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