KCC002019A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002019A_C01 KCC002019A_c01
ctcaacagacaccattaatacaacttgcgacagaatgtatgactgccgtcgcgctctctc
gcccgcgcctcggccacccgGCCAAGTCTCGCCTCGCCGAGGCTGCCGCGGGGACATAGG
TCGGCATCATCATCGCCGAGATAGTGGACCCGCTCATTAGTGCGAAAGCCTTATAACTTG
AACCATGTGGAAGTACCTGGTCAAGCAAGGGCCAGGGACACGGATGGACGCCGCGGCTGC
CGCGAATGCCGCGGAGGAGACCAGTGCAACGGACGCCAGCGCTCTTGCTGCTGTCTCTTG
CTGCTATCTATGCGTAGTTTTGTGTTGCGTTTCTGTGCGATAGACATGGTGACGGTTTGT
CGTGCCTGCGGACCGGCATGTGACGTGCGTGTTATGCGCGGCCCCTGCAGGTGAGAAGCG
CATGGCCCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCATGGGTGA
GAAGCGCATGGCCCAGGAGGGCTATGACGCGGACGGCAAGTCCACTGCGGCGGTGGCCAT
GGGGGTGGCGGTCATGGCAGTCGACGGCTACGATGAGGTCGGCAGGTCCATTGCGGCACG
TAGCGCGGGCGCTGCCCGTGCGGAAAAGGCCGGTATGTTCATCTGGGCACCCGTCTGGCC
CAAGCTGCACGAGTGGGTCAAGGCCCACCCCTCCAGAACGGTGGACTGGACCGCGGCCGA
AAAGCACCTGCGGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002019A_C01 KCC002019A_c01
         (735 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|em...    51  2e-05
emb|CAD40600.1| OSJNBb0066J23.4 [Oryza sativa (japonica cultivar...    50  3e-05
emb|CAA78398.1| Pistil extensin like protein, partial CDS only [...    50  4e-05
pir||A48232 cysteine-rich extensin-like protein 1 precursor - co...    50  4e-05
gb|AAF71259.1|AF231707_1 vitelline envelope protein beta [Oncorh...    50  4e-05

>pir||S20500 hydroxyproline-rich glycoprotein - rice gi|433816|emb|CAA43583.1|
           hydroxyproline-rich glycoprotein [Oryza sativa]
          Length = 369

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 1/165 (0%)
 Frame = -2

Query: 722 FRPRSSPPFWRGGP*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPP 543
           + P  +PP ++  P PT A +       TY+P P    P Y P      ++ +  P PPP
Sbjct: 137 YTPTPTPPMYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPYTPTPAPPTYKPQPKPNPPP 196

Query: 542 PW-PPPQWTCRPRHSPPGPCASHPWPPPQWTCRPRHSPPGPCASHLQGPRITRTSHAGPQ 366
            + P P+ T  P    P      P P P  T +P+   P P  ++   P+ T T    P 
Sbjct: 197 TYKPAPKPTPTPYQPAPPTYKPQPKPNPPPTYKPQ-PKPNPPPTYKPAPKPTPT----PY 251

Query: 365 ARQTVTMSIAQKRNTKLRIDSSKRQQQERWRPLHWSPPRHSRQPR 231
                T     K N          + Q +  P  ++PP +  QP+
Sbjct: 252 KPAPPTYKPQPKPN-----PPPTYKPQPKPTPTPYTPPTYKPQPK 291

 Score = 38.9 bits (89), Expect = 0.084
 Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
 Frame = -2

Query: 704 PPFWRGGP*PTRAAWARRVPR*TYRPFPH-GQRPRYVPQWTCRPHRSRRLP*PPPPWP-- 534
           PP ++  P PT   +    P  TY+P P     P Y PQ    P  + +    P P P  
Sbjct: 195 PPTYKPAPKPTPTPYQPAPP--TYKPQPKPNPPPTYKPQPKPNPPPTYKPAPKPTPTPYK 252

Query: 533 --PPQWTCRPRHSPPGPCASHPWP------PPQWTCRPRHSPPGPCASHLQGPRITRTSH 378
             PP +  +P+ +PP      P P      PP +  +P+ +P     +    P    T  
Sbjct: 253 PAPPTYKPQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYK 312

Query: 377 AGPQARQTVTMSIAQKRNTKLRIDSSKRQQQERWRPLHWSPPRHSRQP 234
             P+   T T    Q + T              + P   +PP H   P
Sbjct: 313 PQPKPTPTPTPYKPQPKPTPSPYTPKPTPTPPTYTPTP-TPPYHKPPP 359

 Score = 35.8 bits (81), Expect = 0.71
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = -2

Query: 683 P*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWPPPQWTCRPRH 504
           P P + A     P   ++P PH   P+  P+   + H+      P P   PP +T  P+ 
Sbjct: 35  PTPVKPAPKPEKPPKEHKP-PHHHEPK--PEKPPKEHKPPAYTPPKPTPTPPTYTPTPKP 91

Query: 503 SPPGPCASHPWPPPQWTCRPRHSP 432
           +PP P    P PP      P ++P
Sbjct: 92  TPP-PYTPKPTPPAHTPTPPTYTP 114

 Score = 35.0 bits (79), Expect = 1.2
 Identities = 46/190 (24%), Positives = 66/190 (34%), Gaps = 27/190 (14%)
 Frame = -2

Query: 719 RPRSSPPFWRGGP*PTRAAW-------ARRVPR*TYRPFPHGQR---PRYVPQWTCRPHR 570
           +P  +PP +   P PT   +       A      TY P P   +   P Y PQ    P  
Sbjct: 77  KPTPTPPTYTPTPKPTPPPYTPKPTPPAHTPTPPTYTPTPTPPKPTPPTYKPQPKPTPAP 136

Query: 569 SRRLP*PPPPWPPPQWTCRPRHSPPGPCASHPWP---PPQWT---CRPRHSP---PGPCA 417
               P PP   P P+ T  P    P P    P P   PP +T     P + P   P P  
Sbjct: 137 YTPTPTPPMYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPYTPTPAPPTYKPQPKPNPPP 196

Query: 416 SHLQGPRITRTSH--------AGPQARQTVTMSIAQKRNTKLRIDSSKRQQQERWRPLHW 261
           ++   P+ T T +          P+     T     K N       + +     ++P   
Sbjct: 197 TYKPAPKPTPTPYQPAPPTYKPQPKPNPPPTYKPQPKPNPPPTYKPAPKPTPTPYKP--- 253

Query: 260 SPPRHSRQPR 231
           +PP +  QP+
Sbjct: 254 APPTYKPQPK 263

 Score = 34.7 bits (78), Expect = 1.6
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
 Frame = -2

Query: 704 PPFWRGGP*PTRAAWA----RRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPW 537
           PP ++  P PT   +     +  P+ T  P P+   P+  P  T +P + +  P P P  
Sbjct: 267 PPTYKPQPKPTPTPYTPPTYKPQPKPTPTPTPYTPTPKPNPPPTYKP-QPKPTPTPTPYK 325

Query: 536 PPPQ-----WTCRPRHSPPG--PCASHPW--PPPQWTCRPRHSPP 429
           P P+     +T +P  +PP   P  + P+  PPP +T  P   PP
Sbjct: 326 PQPKPTPSPYTPKPTPTPPTYTPTPTPPYHKPPPSYT--PGPPPP 368

 Score = 32.7 bits (73), Expect = 6.0
 Identities = 20/69 (28%), Positives = 31/69 (43%)
 Frame = -2

Query: 635 YRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWPPPQWTCRPRHSPPGPCASHPWPPPQW 456
           Y P P   +P   P+   + H+      P P  PP +    P ++PP P  +    PP +
Sbjct: 31  YTPTPTPVKPAPKPEKPPKEHKPPHHHEPKPEKPPKEHK-PPAYTPPKPTPT----PPTY 85

Query: 455 TCRPRHSPP 429
           T  P+ +PP
Sbjct: 86  TPTPKPTPP 94

>emb|CAD40600.1| OSJNBb0066J23.4 [Oryza sativa (japonica cultivar-group)]
          Length = 1348

 Score = 50.4 bits (119), Expect = 3e-05
 Identities = 35/99 (35%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = -2

Query: 581  RPHRSRRLP*PPPPWPPPQWTCRPRHSPPGPCASHPWPPPQWTCRPRHSPPGPCASHLQG 402
            R   SR L  P PP PPP     P   PP P    P PPP     P  SPP P       
Sbjct: 894  RQAASRALYPPAPPSPPPPSPPVPPPRPPAPSPPAPPPPPAAPSPPAPSPPPPPPCPSTP 953

Query: 401  PRITRTSHAGPQARQTVT--MSIAQKRNTKLRIDSSKRQ 291
            P+I R+ HA P AR   T    +   +N +   D S+ +
Sbjct: 954  PKI-RSRHAAPPARTRATKKAKVGATKNKEPPYDCSQEE 991

>emb|CAA78398.1| Pistil extensin like protein, partial CDS only [Nicotiana tabacum]
          Length = 171

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 37/87 (42%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
 Frame = -2

Query: 662 WARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWPPPQWTCRPRHSP----- 498
           W   +P     PFP    P     W C P R R  P P P  PPP    RPR  P     
Sbjct: 7   WPWEIPCYLTWPFPWPPPP----PWPCPPPRPRPRPRPCPSPPPPP---RPRPCPSPPPP 59

Query: 497 --PGPCASHPWPPPQWTCRPRHSPPGP 423
             P PC S P PPPQ   RPR SPP P
Sbjct: 60  PRPRPCPSPP-PPPQ--PRPRPSPPPP 83

 Score = 39.3 bits (90), Expect = 0.064
 Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = -2

Query: 683 P*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPP-------WPPPQ 525
           P P    W    PR   RP P    P         P R R  P PPPP        PPP 
Sbjct: 20  PWPPPPPWPCPPPRPRPRPRPCPSPPP--------PPRPRPCPSPPPPPRPRPCPSPPPP 71

Query: 524 WTCRPRHSPPGPCASHPWPPPQWTC 450
              RPR SPP P  S P P P  +C
Sbjct: 72  PQPRPRPSPPPP--SPPPPAPSSSC 94

>pir||A48232 cysteine-rich extensin-like protein 1 precursor - common tobacco
           gi|310923|gb|AAA34059.1| cysteine-rich extensin-like
           protein-1
          Length = 209

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 37/87 (42%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
 Frame = -2

Query: 662 WARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWPPPQWTCRPRHSP----- 498
           W   +P     PFP    P     W C P R R  P P P  PPP    RPR  P     
Sbjct: 45  WPWEIPCYLTWPFPWPPPP----PWPCPPPRPRPRPRPCPSPPPPP---RPRPCPSPPPP 97

Query: 497 --PGPCASHPWPPPQWTCRPRHSPPGP 423
             P PC S P PPPQ   RPR SPP P
Sbjct: 98  PRPRPCPSPP-PPPQ--PRPRPSPPPP 121

 Score = 39.3 bits (90), Expect = 0.064
 Identities = 32/85 (37%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = -2

Query: 683 P*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPP-------WPPPQ 525
           P P    W    PR   RP P    P         P R R  P PPPP        PPP 
Sbjct: 58  PWPPPPPWPCPPPRPRPRPRPCPSPPP--------PPRPRPCPSPPPPPRPRPCPSPPPP 109

Query: 524 WTCRPRHSPPGPCASHPWPPPQWTC 450
              RPR SPP P  S P P P  +C
Sbjct: 110 PQPRPRPSPPPP--SPPPPAPSSSC 132

>gb|AAF71259.1|AF231707_1 vitelline envelope protein beta [Oncorhynchus mykiss]
          Length = 524

 Score = 50.1 bits (118), Expect = 4e-05
 Identities = 31/96 (32%), Positives = 41/96 (42%)
 Frame = -2

Query: 683 P*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWPPPQWTCRPRH 504
           P  T  +W  + P+   +P    QRP   PQW  +P +    P P  P  PPQ   +P+ 
Sbjct: 31  PIQTPPSWPAQPPQ---KPIQPPQRPAQPPQWPVQPPQRPAQP-PQRPAQPPQRPAQPQQ 86

Query: 503 SPPGPCASHPWPPPQWTCRPRHSPPGPCASHLQGPR 396
            P  P    P  PPQW  +P   P  P     Q P+
Sbjct: 87  WPAQP-PQRPAQPPQWPAQPPQRPAQPPQRPAQPPQ 121

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 37/110 (33%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
 Frame = -2

Query: 716 PRSSPPFWRGGP*------PTRAA----WARRVPR*TYRPFPHGQRPRYVPQWTCRPHRS 567
           P  +PP W   P       P R A    W  + P+   RP    QRP   PQ   RP + 
Sbjct: 31  PIQTPPSWPAQPPQKPIQPPQRPAQPPQWPVQPPQ---RPAQPPQRPAQPPQ---RPAQP 84

Query: 566 RRLP*PPPPWP--PPQWTCRPRHSPPGPCASHPWPPPQWTCRPRHSPPGP 423
           ++ P  PP  P  PPQW  +P   P  P    P  PPQ   +P   P  P
Sbjct: 85  QQWPAQPPQRPAQPPQWPAQPPQRPAQP-PQRPAQPPQRPAQPPQRPAQP 133

 Score = 45.4 bits (106), Expect = 9e-04
 Identities = 37/113 (32%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
 Frame = -2

Query: 710 SSPPFWRGGP*PTRAAWARRVPR*TYRPFPHGQRPRYVPQWTCRPHRSRRLP*PPPPWP- 534
           + PP W   P P R A   +      RP    QRP    QW  +P +    P  PP WP 
Sbjct: 54  AQPPQWPVQP-PQRPAQPPQ------RPAQPPQRPAQPQQWPAQPPQR---PAQPPQWPA 103

Query: 533 -PPQWTCRPRHSP------PGPCASHPWPPPQWTCRPRHSPPGPCASHLQGPR 396
            PPQ   +P   P      P      P  PPQW   P   P  P  + LQ P+
Sbjct: 104 QPPQRPAQPPQRPAQPPQRPAQPPQRPAQPPQWPVHPPQWPVQP-GTPLQRPK 155

 Score = 39.3 bits (90), Expect = 0.064
 Identities = 21/65 (32%), Positives = 24/65 (36%)
 Frame = -2

Query: 590 WTCRPHRSRRLP*PPPPWPPPQWTCRPRHSPPGPCASHPWPPPQWTCRPRHSPPGPCASH 411
           W C        P  PP   PP W  +P   P  P    P  PPQW  +P   P  P    
Sbjct: 16  WLCDAQIYLEKPGWPPIQTPPSWPAQPPQKPIQP-PQRPAQPPQWPVQPPQRPAQPPQRP 74

Query: 410 LQGPR 396
            Q P+
Sbjct: 75  AQPPQ 79



EST assemble image


clone accession position
1 LC071h01_r AV624020 1 488
2 MX225h03_r BP090575 185 590
3 LC094h03_r AV625576 216 590
4 HC049e02_r AV635680 290 735




Chlamydomonas reinhardtii
Kazusa DNA Research Institute