Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC002015A_C01 KCC002015A_c01
(739 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199003.1| DNA polymerase alpha subunit IV (primase)-relat... 241 7e-63
gb|AAM89973.1|AF403474_1 DNA primase catalytic subunit p48 [Mone... 217 1e-55
ref|NP_593765.1| probable DNA primase small subunit [Schizosacch... 212 6e-54
ref|XP_331008.1| hypothetical protein [Neurospora crassa] gi|289... 204 9e-52
ref|NP_032947.1| DNA primase, p49 subunit [Mus musculus] gi|1308... 199 3e-50
>ref|NP_199003.1| DNA polymerase alpha subunit IV (primase)-related protein
[Arabidopsis thaliana] gi|10177372|dbj|BAB10663.1| DNA
polymerase alpha subunit IV (primase)-like protein
[Arabidopsis thaliana]
Length = 407
Score = 241 bits (616), Expect = 7e-63
Identities = 115/251 (45%), Positives = 169/251 (66%), Gaps = 5/251 (1%)
Frame = +2
Query: 2 EFCFTLQGDIFVRYQAFKDGAALQEAILRRCPDKIDIGPVYSANPMDRHKFGVA----FH 169
EF FTL+ D+++RY++FK+ + ++ AI P KIDIG VYS +P RH + + F
Sbjct: 51 EFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLFT 110
Query: 170 PEERELVFDIDLTDYDDVRTCGSGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYS 349
P ERELVFDID+TDYDDVR C SG +C KCWPLM+VA+K+ID LR++FGFKHILWV+S
Sbjct: 111 PVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVFS 170
Query: 350 GRRGIHCWVCDPSARQLSDEQRSAVASWFAMYKGHEEGKARVALLGGNMHPAVERA-AGI 526
GRRG+HCWVCD AR+L++EQRSAVA +F +YKG+E +V L+G ++HP + R+
Sbjct: 171 GRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAKKVDLMGHSLHPFLARSYVDF 230
Query: 527 LRSAWVQTLLPAQQLLEDGPQCEALLRYLPEEGLVETVRKKWTEASRSRNAGNMDVNVVR 706
++S + L Q + + E +L + +E + +R KW ++RS + +++R
Sbjct: 231 IKSFFEGELQATQSIFSSKEKYEKILGMITDEDIQADLRGKWENSARS-SLSEEATSLLR 289
Query: 707 WRALEEAVNER 739
W L++A+ +
Sbjct: 290 WEQLKKALQSK 300
>gb|AAM89973.1|AF403474_1 DNA primase catalytic subunit p48 [Moneuplotes crassus]
Length = 441
Score = 217 bits (553), Expect = 1e-55
Identities = 103/247 (41%), Positives = 157/247 (62%), Gaps = 1/247 (0%)
Frame = +2
Query: 2 EFCFTLQGDIFVRYQAFKDGAALQEAILRRCPDKIDIGPVYSANPMDRHKF-GVAFHPEE 178
EF FTL+ I+VRY FK+ ++ ++ + P+KIDIG V++ P + AF P+E
Sbjct: 60 EFSFTLEDGIYVRYNCFKNEEEFKQTLIEKSPEKIDIGAVFNMPPKNHSSVESRAFIPQE 119
Query: 179 RELVFDIDLTDYDDVRTCGSGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYSGRR 358
+ELVFDID+TDYDDVRTC G ++C KCW MS+A KIIDK +R++FG+KH+LWV+SGRR
Sbjct: 120 KELVFDIDMTDYDDVRTCCEGANVCLKCWRFMSIATKIIDKAMREDFGYKHLLWVFSGRR 179
Query: 359 GIHCWVCDPSARQLSDEQRSAVASWFAMYKGHEEGKARVALLGGNMHPAVERAAGILRSA 538
G+HCWVCDPS R+L++E RSA+A++ ++ G+E G + A + HPA+ RA I++
Sbjct: 180 GVHCWVCDPSTRKLTNEARSAIANYLTVHVGNEMG-STTAKIDFVAHPAISRAKDIIKEE 238
Query: 539 WVQTLLPAQQLLEDGPQCEALLRYLPEEGLVETVRKKWTEASRSRNAGNMDVNVVRWRAL 718
+ ++ Q +L Q + L+ LPEE + ++ W R + + + +V W
Sbjct: 239 FTDIMMRGQNILSKEEQRKKLIEMLPEEEVRNHLKTNW---DRYTDYEDQENSVKLWNIF 295
Query: 719 EEAVNER 739
E ++
Sbjct: 296 TEIAGDK 302
>ref|NP_593765.1| probable DNA primase small subunit [Schizosaccharomyces pombe]
gi|3183125|sp|O14215|PRI1_SCHPO DNA primase small
subunit gi|7492531|pir||T39017 probable DNA primase
small subunit - fission yeast (Schizosaccharomyces
pombe) gi|2440193|emb|CAB11078.1| SPAC6B12.10c
[Schizosaccharomyces pombe]
Length = 454
Score = 212 bits (539), Expect = 6e-54
Identities = 105/230 (45%), Positives = 147/230 (63%), Gaps = 2/230 (0%)
Frame = +2
Query: 2 EFCFTLQGDIFVRYQAFKDGAALQEAILRRCPDKIDIGPVYSANPMDRHKFGVA-FHPEE 178
EF FTL D ++RY +F + L++ L CP + ++GPVYSANP DR + FHP +
Sbjct: 66 EFAFTLPNDAYIRYLSFSNWEELKKEALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLK 125
Query: 179 RELVFDIDLTDYDDVRTCGSGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYSGRR 358
+ELVFDID+TDYDDVRTC S +IC KCWP +++AV+++D ++FGFKHILWVYSGRR
Sbjct: 126 KELVFDIDMTDYDDVRTCCSKTNICEKCWPFITIAVQVLDICFHEDFGFKHILWVYSGRR 185
Query: 359 GIHCWVCDPSARQLSDEQRSAVASWFAMYKGHEEGKAR-VALLGGNMHPAVERAAGILRS 535
GIH W+CD A L D R +AS+ + G+ +G R + L +HP + R+ IL+S
Sbjct: 186 GIHAWICDEIACSLDDRSRRMIASYLQVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKS 245
Query: 536 AWVQTLLPAQQLLEDGPQCEALLRYLPEEGLVETVRKKWTEASRSRNAGN 685
A+V+ +L Q E LL+ LP++ L +RKKW E R++ N
Sbjct: 246 AFVKIVLEDQDPWASKEGAENLLKLLPDKDLASALRKKW-EVDPERSSKN 294
>ref|XP_331008.1| hypothetical protein [Neurospora crassa] gi|28921091|gb|EAA30409.1|
hypothetical protein [Neurospora crassa]
Length = 576
Score = 204 bits (520), Expect = 9e-52
Identities = 102/224 (45%), Positives = 141/224 (62%), Gaps = 4/224 (1%)
Frame = +2
Query: 2 EFCFTLQGDIFVRYQAFKDGAALQEAILRRCPDKIDIGPVYSANPMDRHKF--GVAFHPE 175
EF FTLQ D ++RYQ+F L++ +LR P + +IGPVY+ANP DR AF P
Sbjct: 185 EFAFTLQNDAYLRYQSFTTSDLLRKDVLRLMPSRFEIGPVYTANPRDRKTLRNSSAFRPL 244
Query: 176 ERELVFDIDLTDYDDVRTCGSGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYSGR 355
+EL FDIDLTDYDD+RTC +IC KCW +++A+K++D LR++FGFKHI+WVYSGR
Sbjct: 245 SKELCFDIDLTDYDDIRTCCDKANICQKCWQFITMAIKVVDTALREDFGFKHIMWVYSGR 304
Query: 356 RGIHCWVCDPSARQLSDEQRSAVASWFAMYKGHEEGKARVALLGGNMHPAVERAAGILRS 535
RG H WVCD SAR L D++R A+A + + +G + +V L +HP + R+ IL+
Sbjct: 305 RGAHAWVCDKSARALDDQKRRAIAGYLEVIRGGAQSGKKVN-LRRPLHPHLVRSLDILKQ 363
Query: 536 AWVQTLLPAQQLLEDGPQCEALLRYLP--EEGLVETVRKKWTEA 661
+ +L AQ Q E LL LP ++ LV +R KW +
Sbjct: 364 HFQSDVLEAQDPWRTEDQQEKLLALLPSDQKQLVSALRNKWASS 407
>ref|NP_032947.1| DNA primase, p49 subunit [Mus musculus]
gi|130897|sp|P20664|PRI1_MOUSE DNA primase small subunit
(DNA primase 49 kDa subunit) (p49)
gi|303661|dbj|BAA02744.1| primase small subunit [Mus
musculus] gi|26353584|dbj|BAC40422.1| unnamed protein
product [Mus musculus] gi|26354202|dbj|BAC40729.1|
unnamed protein product [Mus musculus]
Length = 417
Score = 199 bits (507), Expect = 3e-50
Identities = 97/208 (46%), Positives = 140/208 (66%), Gaps = 2/208 (0%)
Frame = +2
Query: 2 EFCFTLQGDIFVRYQAFKDGAALQEAILRRCPDKIDIGPVYSANPMDRH--KFGVAFHPE 175
EF FTL+ DI++RYQ+F + + L++ + + P KIDIG VYS P + K G AF +
Sbjct: 44 EFSFTLKDDIYIRYQSFNNQSELEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLG-AFQAQ 102
Query: 176 ERELVFDIDLTDYDDVRTCGSGGHICGKCWPLMSVAVKIIDKGLRDEFGFKHILWVYSGR 355
E+ELVFDID+TDYDDVR C S IC KCW LM++A++IID+ L+++FGFKH LWVYSGR
Sbjct: 103 EKELVFDIDMTDYDDVRRCCSSADICSKCWTLMTMAMRIIDRALKEDFGFKHRLWVYSGR 162
Query: 356 RGIHCWVCDPSARQLSDEQRSAVASWFAMYKGHEEGKARVALLGGNMHPAVERAAGILRS 535
RG+HCWVCD S R+LS RS + + ++ KG ++ K +V L +HP V ++ I++
Sbjct: 163 RGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVH-LNEKVHPFVRKSINIIKK 221
Query: 536 AWVQTLLPAQQLLEDGPQCEALLRYLPE 619
+ + L Q +LE+ + +L +PE
Sbjct: 222 YFEEYALVGQDILENKENWDKILALVPE 249
