KCC002012A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC002012A_C01 KCC002012A_c01
GCTACTTATAGCGACCCAGTTGTCGACATTGCCGAGACCAACCTCGCACGCGTCAAGAAT
GCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGCGCGTCGGCCTCGTCGCACCT
TGTACATGGACCGCGTCAGACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCA
GGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCTGGGGGCTA
CATTGTGCCGTCGCCTGACGTGCCTATCTCGGAGTCCCTCACGAACGCTCAGCCTGGCGC
TATTGTGAAGGCTGCGCTGCTGGACGCCATCTGCGGCACCGAGCGCGGCCTTGTGGCCCG
CTCGGAGGTACGGGCCGAGATCAACGAGCTGGTGAACCAGCTGGAGGTGCAGGGCGGGCA
GGGCGCGGACGTGGCCAGCCTGGAGTTCGAGGGCACCTGGGAGCTGCTGTACACCAACGC
GGTGGAGCTGCTGGCCATCCTGGCCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGG
CGCCGTCACCCAGACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCA
GCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCGTCGCCCAA
GCGGCTGCAGTTCACCGTTGAGCGCGGCGTGCTGCACACGCCCTCCATCGAGGGCAACCT
GGAGCTGCCCGCCTCCATCACC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC002012A_C01 KCC002012A_c01
         (742 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO72593.1| fibrillin-like protein [Oryza sativa (japonica cu...   117  2e-25
gb|AAK57565.1|AF290567_1 plastid-lipid associated protein PAP2 [...   108  7e-23
gb|AAK57562.1| plastid-lipid associated protein PAP2 [Brassica r...   108  7e-23
gb|AAK57561.1| plastid-lipid associated protein PAP1 [Brassica r...   106  4e-22
gb|AAK57564.1| plastid-lipid associated protein PAP1 [Brassica r...   106  4e-22

>gb|AAO72593.1| fibrillin-like protein [Oryza sativa (japonica cultivar-group)]
          Length = 319

 Score =  117 bits (292), Expect = 2e-25
 Identities = 86/248 (34%), Positives = 126/248 (50%), Gaps = 8/248 (3%)
 Frame = +2

Query: 11  ATQLSTL------PRPTSHASRMLTSPRCCGRVGSRASASSHLVHGPRQTQPRRFSTAVR 172
           ++ LSTL      P P+  AS  L +P   G  G  A     L   PR+   R  +    
Sbjct: 4   SSSLSTLSLCTQSPSPSPVASGRLVAPAVLGFAG--APRFPTLRAAPRRLTARAVAGDAE 61

Query: 173 STQGSGAAAPHSAPAEQGAAGGYIVPSP-DVPISESLTNAQPGAIVKAALLDAICGTERG 349
              G   AA      +QG A   +  +P DVP++  +      A +KA L +A+ GTERG
Sbjct: 62  DEXGKEPAA------DQGGAAAAVAEAPADVPVTSEV------AELKAKLKEALYGTERG 109

Query: 350 LVARSEVRAEINELVNQLEVQGGQGADVASLEF-EGTWELLYTNAVELLAILAINKLPLS 526
           L A SE RAE+ EL+ QLE +    A   +L    G W L YT+  +L  +L    LP  
Sbjct: 110 LRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLP-Q 168

Query: 527 PVKIGAVTQTINSTDRTVENSLELQLPLIITSLSTVSNYNVASPKRLQFTVERGVLHTPS 706
            VK+  ++QTI+S + TV+N ++   PL  TS+ST + + V SPKR+Q   + G++ TP 
Sbjct: 169 LVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQ 228

Query: 707 IEGNLELP 730
           +  ++ LP
Sbjct: 229 LTDSIVLP 236

>gb|AAK57565.1|AF290567_1 plastid-lipid associated protein PAP2 [Brassica rapa]
          Length = 319

 Score =  108 bits (271), Expect = 7e-23
 Identities = 61/154 (39%), Positives = 96/154 (61%), Gaps = 1/154 (0%)
 Frame = +2

Query: 272 ESLTNAQPGAIVKAALLDAICGTERGLVARSEVRAEINELVNQLEVQGGQGADVASLEF- 448
           E++ + +   ++K +L+D++ GT+RGL A SE RAEI +L+ QLE +    A   +L   
Sbjct: 84  EAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLL 143

Query: 449 EGTWELLYTNAVELLAILAINKLPLSPVKIGAVTQTINSTDRTVENSLELQLPLIITSLS 628
            G W L YT+ V L  +L+   +PL  VK+  ++QTI+S + TVENS+    PL  TS+S
Sbjct: 144 NGKWILAYTSFVGLFPLLSRGIVPL--VKVDEISQTIDSDNFTVENSVLFAGPLATTSIS 201

Query: 629 TVSNYNVASPKRLQFTVERGVLHTPSIEGNLELP 730
           T + + + SPKR+Q   E GV+ TP +  ++E+P
Sbjct: 202 TNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIP 235

>gb|AAK57562.1| plastid-lipid associated protein PAP2 [Brassica rapa]
          Length = 319

 Score =  108 bits (271), Expect = 7e-23
 Identities = 61/154 (39%), Positives = 96/154 (61%), Gaps = 1/154 (0%)
 Frame = +2

Query: 272 ESLTNAQPGAIVKAALLDAICGTERGLVARSEVRAEINELVNQLEVQGGQGADVASLEF- 448
           E++ + +   ++K +L+D++ GT+RGL A SE RAEI +L+ QLE +    A   +L   
Sbjct: 84  EAIESVEETEVLKRSLVDSLYGTDRGLSASSETRAEIGDLITQLESKNPTPAPTDALFLL 143

Query: 449 EGTWELLYTNAVELLAILAINKLPLSPVKIGAVTQTINSTDRTVENSLELQLPLIITSLS 628
            G W L YT+ V L  +L+   +PL  VK+  ++QTI+S + TVENS+    PL  TS+S
Sbjct: 144 NGKWILAYTSFVGLFPLLSRGIVPL--VKVDEISQTIDSDNFTVENSVLFAGPLATTSIS 201

Query: 629 TVSNYNVASPKRLQFTVERGVLHTPSIEGNLELP 730
           T + + + SPKR+Q   E GV+ TP +  ++E+P
Sbjct: 202 TNAKFEIRSPKRVQIKFEEGVIGTPQLTDSIEIP 235

>gb|AAK57561.1| plastid-lipid associated protein PAP1 [Brassica rapa]
          Length = 327

 Score =  106 bits (264), Expect = 4e-22
 Identities = 63/154 (40%), Positives = 93/154 (59%), Gaps = 1/154 (0%)
 Frame = +2

Query: 272 ESLTNAQPGAIVKAALLDAICGTERGLVARSEVRAEINELVNQLEVQGGQGA-DVASLEF 448
           E++ +A+    +K  L  ++ GT+RGL A SE RAEI+EL+ QLE +    A + A    
Sbjct: 92  EAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLL 151

Query: 449 EGTWELLYTNAVELLAILAINKLPLSPVKIGAVTQTINSTDRTVENSLELQLPLIITSLS 628
            G W L+YT+ V L  +L+    PL  VK+  ++QTI+S   TV NS+    PL  TSLS
Sbjct: 152 NGKWILVYTSFVGLFPLLSRRISPL--VKVDEISQTIDSDSFTVHNSVRFASPLATTSLS 209

Query: 629 TVSNYNVASPKRLQFTVERGVLHTPSIEGNLELP 730
           T + + V SPKR+Q   E+GV+ TP +  ++E+P
Sbjct: 210 TNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIP 243

>gb|AAK57564.1| plastid-lipid associated protein PAP1 [Brassica rapa]
          Length = 327

 Score =  106 bits (264), Expect = 4e-22
 Identities = 63/154 (40%), Positives = 93/154 (59%), Gaps = 1/154 (0%)
 Frame = +2

Query: 272 ESLTNAQPGAIVKAALLDAICGTERGLVARSEVRAEINELVNQLEVQGGQGA-DVASLEF 448
           E++ +A+    +K  L  ++ GT+RGL A SE RAEI+EL+ QLE +    A + A    
Sbjct: 92  EAIESAEETERLKRVLAGSLYGTDRGLSASSETRAEISELITQLESKNPNPAPNEALFLL 151

Query: 449 EGTWELLYTNAVELLAILAINKLPLSPVKIGAVTQTINSTDRTVENSLELQLPLIITSLS 628
            G W L+YT+ V L  +L+    PL  VK+  ++QTI+S   TV NS+    PL  TSLS
Sbjct: 152 NGKWILVYTSFVGLFPLLSRRISPL--VKVDEISQTIDSDSFTVHNSVRFASPLATTSLS 209

Query: 629 TVSNYNVASPKRLQFTVERGVLHTPSIEGNLELP 730
           T + + V SPKR+Q   E+GV+ TP +  ++E+P
Sbjct: 210 TNAKFEVRSPKRVQVKFEQGVIGTPQLTDSIEIP 243



EST assemble image


clone accession position
1 HC048a08_r AV635573 1 545
2 HC055g02_r AV636143 77 495
3 MX212g09_r BP089715 107 402
4 MX064d07_r BP088590 116 447
5 MX252b07_r BP092292 120 613
6 LCL055e09_r AV629263 395 849




Chlamydomonas reinhardtii
Kazusa DNA Research Institute