Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001997A_C01 KCC001997A_c01
(547 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00054876.1| hypothetical protein [Magnetospirillum magnet... 41 0.009
ref|ZP_00032045.1| COG0477: Permeases of the major facilitator s... 40 0.020
sp|Q9W6D8|BRX1_CHICK Homeobox protein BarH-like 1 gi|4455038|gb|... 39 0.035
ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas p... 39 0.045
ref|XP_289565.1| hypothetical protein XP_289565 [Mus musculus] 39 0.045
>ref|ZP_00054876.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 626
Score = 41.2 bits (95), Expect = 0.009
Identities = 34/78 (43%), Positives = 40/78 (50%), Gaps = 8/78 (10%)
Frame = -2
Query: 480 AARHHNAERVGGP*AHQQHQVRQG-QRHEG-----PHRREEA-RG-LAREERHQHNAERR 325
AARH A G + V QG QRH G P RR A RG L R RH+H+ RR
Sbjct: 39 AARHRVAAGAGSRHRRGRASVGQGPQRHAGLYEGGPARRAAAARGRLVRHRRHRHH--RR 96
Query: 324 VGSASYHGENDALRKRRG 271
VG ++ G ALR+ RG
Sbjct: 97 VGLCAHRGARQALRQDRG 114
>ref|ZP_00032045.1| COG0477: Permeases of the major facilitator superfamily
[Burkholderia fungorum]
Length = 456
Score = 40.0 bits (92), Expect = 0.020
Identities = 34/111 (30%), Positives = 48/111 (42%), Gaps = 1/111 (0%)
Frame = +1
Query: 199 VCKASAAAAAKPCC-KAAAAAAAAAAPALPEGVILTVVAGAAYTALSIVLMALFPRKTSG 375
+C A A A C +A AA AAA+ +P ++ + GA AL +M +
Sbjct: 147 ICCALAQGTASFCAFRALAAFGAAASIVVPRAMVRDLADGAKAAALMSGVMQVM------ 200
Query: 376 FFSSVWPFVPLALAYLVLLVGSWSPDTLSIMMPGSLEAGLKGGFNPQFLPK 528
SV P V L LVL SW + + G+L L F P+ LP+
Sbjct: 201 ---SVAPVVAPVLGSLVLEFASWRMIFVVAALYGALSLALMACFLPETLPR 248
>sp|Q9W6D8|BRX1_CHICK Homeobox protein BarH-like 1 gi|4455038|gb|AAD21043.1|
homeodomain-containing transcription factor BarX-1
[Gallus gallus]
Length = 207
Score = 39.3 bits (90), Expect = 0.035
Identities = 26/72 (36%), Positives = 31/72 (42%)
Frame = +3
Query: 246 SCGCCSCSCPCAS*GRHSHRGSWRCLHGAQHCADGALPAQDLGLLLVGVALRAAGPGVPG 425
SC C C HSH + A+ A P LG +G AL AAGPG+PG
Sbjct: 8 SCSSSGCRRCCRPGPYHSHLAVLK----AEQAAVFKFPLAPLGCSGLGSALLAAGPGMPG 63
Query: 426 AAGGLMVPRHAQ 461
AG +P Q
Sbjct: 64 PAGASHLPLELQ 75
>ref|NP_742363.1| alginate regulatory protein AlgP [Pseudomonas putida KT2440]
gi|24981549|gb|AAN65827.1|AE016211_5 alginate regulatory
protein AlgP [Pseudomonas putida KT2440]
Length = 329
Score = 38.9 bits (89), Expect = 0.045
Identities = 31/93 (33%), Positives = 41/93 (43%), Gaps = 2/93 (2%)
Frame = +1
Query: 49 ASILCKPLSATCAKQSNATRFKGVPFSYKCGISARPGL--AGKVISDSRHPLVCKASAAA 222
A+ KP + AK + A + P + K +A+P A K + ++ A A A
Sbjct: 155 ATAAAKPAAKPAAKTTTAAKPAAKPAA-KATAAAKPAAKPAAKATAAAKPAAKPAAKATA 213
Query: 223 AAKPCCKAAAAAAAAAAPALPEGVILTVVAGAA 321
AAKP K AA A AAA PA T A A
Sbjct: 214 AAKPAAKPAAKATAAAKPAAKPAAKATAAAKPA 246
Score = 38.5 bits (88), Expect = 0.059
Identities = 29/79 (36%), Positives = 39/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 49 ASILCKPLSATCAKQSNATRFKGVPFSYKCGISARPGL--AGKVISDSRHPLVCKASAAA 222
A+ KP + AK + A + P + K +A+P A K + ++ A A A
Sbjct: 183 ATAAAKPAAKPAAKATAAAKPAAKPAA-KATAAAKPAAKPAAKATAAAKPAAKPAAKATA 241
Query: 223 AAKPCCKAAAAAAAAAAPA 279
AAKP K AA AAAAA PA
Sbjct: 242 AAKPAAKPAAKAAAAAKPA 260
Score = 35.0 bits (79), Expect = 0.65
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 49 ASILCKPLSATCAKQSNATRFKGVPFSYKCGISARPGL--AGKVISDSRHPLVCKASAAA 222
A+ KP + AK + A + P + K +A+P A K + ++ A AAA
Sbjct: 197 ATAAAKPAAKPAAKATAAAKPAAKPAA-KATAAAKPAAKPAAKATAAAKPAAKPAAKAAA 255
Query: 223 AAKPCCKAAAAAAAAAAPALP 285
AAKP K AA A AA A P
Sbjct: 256 AAKPAAKPAAKAPAAKPAAKP 276
Score = 32.3 bits (72), Expect = 4.2
Identities = 19/38 (50%), Positives = 19/38 (50%)
Frame = +1
Query: 208 ASAAAAAKPCCKAAAAAAAAAAPALPEGVILTVVAGAA 321
A A AAAKP K AA A AAA PA T A A
Sbjct: 139 AKATAAAKPAAKPAARATAAAKPAAKPAAKTTTAAKPA 176
Score = 31.2 bits (69), Expect = 9.5
Identities = 30/123 (24%), Positives = 43/123 (34%)
Frame = -3
Query: 506 KPPLSPASRLPGIIMLSVSGDHEPTSSTRYARASGTKGHTDEKKPEVLRGKSAISTMLSA 327
KP PA+R + + T++ + A K K K+ + +A
Sbjct: 146 KPAAKPAARATAAAKPAAKPAAKTTTAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAA 205
Query: 326 V*AAPATTVRMTPSGSAGAAAAAAAAAALQQGFAAAAAEALHTKGCRESEMTLPARPGRA 147
AA AT + A A AAA AA A AAA+ + + PA A
Sbjct: 206 KPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKATAAAKPAAKPAAKAAAAAKPAAKPAA 265
Query: 146 LMP 138
P
Sbjct: 266 KAP 268
Score = 31.2 bits (69), Expect = 9.5
Identities = 26/94 (27%), Positives = 36/94 (37%), Gaps = 15/94 (15%)
Frame = +1
Query: 49 ASILCKPLSATCAKQSNATRFKGVPFSYKCGIS---ARPGLAGKVISDSRHPLVCKASAA 219
A+ KP + AK + A + P + + A+P + P KA A
Sbjct: 225 ATAAAKPAAKPAAKATAAAKPAAKPAAKAAAAAKPAAKPAAKAPAAKPAAKPAATKAPAR 284
Query: 220 AAAKPCCKAAAA------------AAAAAAPALP 285
AAKP K A A + AAAAP+ P
Sbjct: 285 TAAKPAAKPAEAKPATPAATTNSVSPAAAAPSAP 318
>ref|XP_289565.1| hypothetical protein XP_289565 [Mus musculus]
Length = 240
Score = 38.9 bits (89), Expect = 0.045
Identities = 31/99 (31%), Positives = 41/99 (41%)
Frame = -1
Query: 451 RGTMSPPAAPGTPGPAARRATPTRRSPRSCAGRAPSAQC*APCRQRQLPR*E*RPQEAQG 272
RG P + P PA P R C+GR P+ CR PR +A+
Sbjct: 71 RGAWEPRSPAVLPRPADPERAPVPRPYLGCSGRGPNL-----CRLLAAPRCLFHQPDAER 125
Query: 271 QLQLQQPQLLCSKASLQQRLRPCTPKGVGSQR*LYLPGP 155
+ L + +L S +L R PC+P GV R L P P
Sbjct: 126 RAPLGRIRLPPSAPALVNRYTPCSP-GVPHPRALQAPQP 163
