KCC001995A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001995A_C01 KCC001995A_c01
tgaaaatagcttatctcataggtaaatcacctgaggcaacactaaagcagcagtagagca
gagacctcgaggtgcgggaaAGTGCGCGGGGGAAGCTTTGCGGGATTGATTGAACACAAA
CAGCGCTTAAAGTATACAAGGCACAGCCTGGTTGTCTCCGGGCGCCACACTAAACAGCAG
AGCCTGTTCCGCGCAGAGACTATCCAAACTCGCAGTCATGGCCTATAACCTGTATCAAGT
CCAGATGGCCAAGGCCTGGGCCGAGCGCATCGACAAGGAGAATGCCATGGCCGAGAAGTT
TTGGCACAGCCAGAGTCTAAAAGGCTCCACGTCGCTGCCGGCCAGCCCGTCGGCCGGTCG
GTCTCCGCACGTTGGGGCGCACTACTTCACGGACTCGGCGGAGGTGCGCTCGCAAGCCGG
TTCCGTTGGGCCCGCCCGGTCCGCCGCCCCCACCGGTTTCACCAGCAAGACCTCGTACCT
CAAGTCCCGGATGGAGCAGCTGGAGGTGGCGCTGCAGGAGGAGCGCGAGAGCCGCAAGAA
GGTGGAGGCTGACCTGAACCACCTGCGCAGCAGCCTGAAGCGCTGAATGAGGATTCAAGG
AGTTGAGAGGAGGGAGTGCATCTCCTGTGTCGGAGGCGCCGCTTCATAGCGAAGCAGGGC
TGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001995A_C01 KCC001995A_c01
         (665 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178...    46  6e-04
sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon...    45  0.001
ref|NP_739323.1| conserved hypothetical protein [Corynebacterium...    44  0.003
dbj|BAB92567.1| P0497A05.11 [Oryza sativa (japonica cultivar-gro...    43  0.005
gb|AAC82365.1| unknown [Myxococcus xanthus]                            37  0.006

>ref|XP_311129.1| ENSANGP00000004749 [Anopheles gambiae] gi|30178092|gb|EAA06612.2|
           ENSANGP00000004749 [Anopheles gambiae str. PEST]
          Length = 633

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 45/135 (33%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
 Frame = -1

Query: 620 CTPSSQLLESSFSASGCCAGGSGQPPPSCGSRAPPAAPPPAAPSGT*GTRSCW*NRWGRR 441
           CTPS         A+ C    S   P  C  R+PP+APP A P+G     +C        
Sbjct: 520 CTPSP-------CAAACPTSPSAARPSGCPGRSPPSAPPAARPAGP--PAAC-------- 562

Query: 440 TGRAQRNRLASAPPPSP*SSAPQRAE------------TDRPTGWPAATWSLLDSGCAKT 297
           T RA   R  SA PPS  S+ P  A               RP   PAA  S    G    
Sbjct: 563 TARAPPGRSRSA-PPSRSSAGPAVASGCGSPPDCSASCAARPPASPAAPRSSAPPG---A 618

Query: 296 SRPWHSPCRCARPRP 252
           SRP   P     PRP
Sbjct: 619 SRPAPRPAAPGAPRP 633

 Score = 32.7 bits (73), Expect = 5.0
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 12/71 (16%)
 Frame = +3

Query: 324 APRRCRPARRPVGLRTL---GRTTSRTRRRCARKPVPLGPPGPPP---------PPVSPA 467
           AP   RPA  P         GR+ S    R +  P      G PP         PP SPA
Sbjct: 549 APPAARPAGPPAACTARAPPGRSRSAPPSRSSAGPAVASGCGSPPDCSASCAARPPASPA 608

Query: 468 RPRTSSPGWSS 500
            PR+S+P  +S
Sbjct: 609 APRSSAPPGAS 619

>sp|P20186|YT35_STRFR Hypothetical 35.5 kDa protein in transposon Tn4556
           gi|80759|pir||JQ0431 hypothetical 35.5K protein -
           Streptomyces fradiae transposon Tn4556
           gi|1196912|gb|AAA88561.1| unknown protein [Streptomyces
           fradiae]
          Length = 348

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 45/132 (34%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
 Frame = -1

Query: 617 TPSSQLLESSFSASGC-CAGGS--GQPPPSCGSRAPPAAPPPAAPSGT*GTRSCW*NRWG 447
           +P+      S S +GC  A GS    P P   S + P A  PAAPS T   R        
Sbjct: 209 SPAPLAARCSASRAGCPTAAGSLLPAPRPPASSASSPQAAAPAAPSATRLPR-------- 260

Query: 446 RRTGRAQRNRLASAPPPSP*SSAPQRAETDRPTGWPAATWSLLDSGCAKTSRPWHSP--- 276
           R T  A R     A PP P +  P R     P   PAA  +   +GC+   R   +P   
Sbjct: 261 RTTPSAPRPSSRPARPPIPAARPPPRRTPGTPR--PAAARARAPAGCSPARRTPSAPTDR 318

Query: 275 -CRCAR---PRP 252
            CR AR   PRP
Sbjct: 319 RCRAARRGSPRP 330

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 49/164 (29%), Positives = 67/164 (39%), Gaps = 8/164 (4%)
 Frame = +3

Query: 75  RESARGKLCGID*TQTALKVYKAQPGCLRAPH*TAEP-----VPRRDYPNSQSWPITCIK 239
           R SAR  +CG D T+T  ++ ++     R+P  T +P     +  R   +    P T   
Sbjct: 174 RSSARF-ICGPD-TRTGPRLSRSSSET-RSPGGTVQPKSPAPLAARCSASRAGCP-TAAG 229

Query: 240 SRWPRPGPSASTRRMPWPRSFGTARV*KAPRRCRPARRPVGLRTLGRTTSRTRRR--CAR 413
           S  P P P AS+   P   +       + PRR  P        +  R +SR  R    A 
Sbjct: 230 SLLPAPRPPASSASSPQAAAPAAPSATRLPRRTTP--------SAPRPSSRPARPPIPAA 281

Query: 414 KPVPLGPPGPPPPPVSPAR-PRTSSPGWSSWRWRCRRSARAARR 542
           +P P   PG P P  + AR P   SP   +      R  RAARR
Sbjct: 282 RPPPRRTPGTPRPAAARARAPAGCSPARRTPSAPTDRRCRAARR 325

>ref|NP_739323.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
           gi|23494557|dbj|BAC19523.1| conserved hypothetical
           protein [Corynebacterium efficiens YS-314]
          Length = 307

 Score = 43.5 bits (101), Expect = 0.003
 Identities = 44/144 (30%), Positives = 51/144 (34%), Gaps = 1/144 (0%)
 Frame = +3

Query: 147 PGCLRAPH*TAEPVPRRDYPNSQSWPITCIKSRWPRPGPSASTRRMPWPRSFGTARV*KA 326
           P C  AP     P  RR YP     P T + + WP      S R   WPR   T      
Sbjct: 2   PSCCPAPPSCPAPPARRVYP-----PRTSVAA-WP-----LSRRLCGWPRGSSTP----C 46

Query: 327 PRRCRPARRPVGLRTLGRTTSRTRRRC-ARKPVPLGPPGPPPPPVSPARPRTSSPGWSSW 503
           P R RP  R        R TSR  R   +   V   PP PPP     +    ++    SW
Sbjct: 47  PGRTRPTTR------CPRPTSRRSRPAGSASRVSTAPPSPPPTAAGWSTASATANRPRSW 100

Query: 504 RWRCRRSARAARRWRLT*TTCAAA 575
                R      RW+   T CA A
Sbjct: 101 ---AGRPCACRSRWQSVSTNCAPA 121

>dbj|BAB92567.1| P0497A05.11 [Oryza sativa (japonica cultivar-group)]
          Length = 300

 Score = 42.7 bits (99), Expect = 0.005
 Identities = 50/153 (32%), Positives = 56/153 (35%), Gaps = 13/153 (8%)
 Frame = -1

Query: 665 LQPCFAMKRRLRHRRCT-----PSSQLLESSFSASGCCAGGSGQPPPSCGS--------R 525
           L P    +RR R RRC      P       S  A    A     P PS  +        R
Sbjct: 58  LPPPEGEERRRRERRCRIRPRWPPPPTDPPSDEADAVVAAVEKAPSPSRSTGRGRGIHPR 117

Query: 524 APPAAPPPAAPSGT*GTRSCW*NRWGRRTGRAQRNRLASAPPPSP*SSAPQRAETDRPTG 345
            PP  PPPAA S   G+RS      GRR GR +       PPP+       R  T  PT 
Sbjct: 118 PPPTPPPPAAGSIAAGSRS-----GGRREGRRE-------PPPAAACDRRHRQRTHPPT- 164

Query: 344 WPAATWSLLDSGCAKTSRPWHSPCRCARPRPWP 246
            P    S  D G     R   S  R  RP+P P
Sbjct: 165 -PPTPPSPPDLGQEGGERGEGSRRRRIRPQPPP 196

>gb|AAC82365.1| unknown [Myxococcus xanthus]
          Length = 542

 Score = 37.0 bits (84), Expect(2) = 0.006
 Identities = 33/105 (31%), Positives = 38/105 (35%), Gaps = 3/105 (2%)
 Frame = +3

Query: 183 PVPRRDYPNSQSWPITCIKSRWPRPGPSASTRRMPWPRSFGTARV*KAPRRCRPARRPVG 362
           P     YP  Q+ P  C     PR  P     R    RSF      ++ RRC     P  
Sbjct: 38  PTETASYPPPQAVPGPCAPRAPPRSPPPRRRHRGSRHRSFRPTCARRSGRRC-----PAP 92

Query: 363 LRTLGRTTSRTRRRCA--RKPVPLGPPGP-PPPPVSPARPRTSSP 488
            R   R  +   RRC   RK  P     P P PP   ARP   +P
Sbjct: 93  SRHARRNPAGPSRRCGPPRKSTPTRCCTPCPAPPRCRARPSAPAP 137

 Score = 33.1 bits (74), Expect = 3.8
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 4/116 (3%)
 Frame = -1

Query: 590 SFSASGCC----AGGSGQPPPSCGSRAPPAAPPPAAPSGT*GTRSCW*NRWGRRTGRAQR 423
           S  ASGCC     G +  P P     +PP+  P  AP+ +           GRR    + 
Sbjct: 149 SSCASGCCPTGRCGSAPGPTPHGAEPSPPSQSPSPAPASS----------GGRRRTHPRP 198

Query: 422 NRLASAPPPSP*SSAPQRAETDRPTGWPAATWSLLDSGCAKTSRPWHSPCRCARPR 255
            R ++A   +P    P R    RP            +GCA+T+ P  S      PR
Sbjct: 199 ARASAAGATAPACLPPPRC-CGRP-----------GTGCARTAPPSTSASHPPPPR 242

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 41/145 (28%), Positives = 48/145 (32%), Gaps = 14/145 (9%)
 Frame = +3

Query: 183 PVPRRDYPNSQSWPITCIKSRWPRPG---PSASTRRMPWPRSFGTARV*KAPRRCRPARR 353
           P P R +P        C+ S    PG   P   T   P P++       +AP R  P RR
Sbjct: 14  PAPGRPFPPP------CLLSERTPPGARPPPTETASYPPPQAVPGPCAPRAPPRSPPPRR 67

Query: 354 -----------PVGLRTLGRTTSRTRRRCARKPVPLGPPGPPPPPVSPARPRTSSPGWSS 500
                      P   R  GR      R   R P   GP     PP      R  +P  + 
Sbjct: 68  RHRGSRHRSFRPTCARRSGRRCPAPSRHARRNPA--GPSRRCGPPRKSTPTRCCTPCPAP 125

Query: 501 WRWRCRRSARAARRWRLT*TTCAAA 575
            R R R SA A    R    TC  A
Sbjct: 126 PRCRARPSAPAPSAGR----TCPTA 146

 Score = 32.3 bits (72), Expect = 6.6
 Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
 Frame = +3

Query: 240 SRWPRPGPSAST-RRMPWPRSFGTARV*KAPRRCRPARRPVGLRTLGRTTSRTRRRCARK 416
           S+ P P P++S  RR   PR    +        C P  R  G    G         CAR 
Sbjct: 178 SQSPSPAPASSGGRRRTHPRPARASAAGATAPACLPPPRCCGRPGTG---------CART 228

Query: 417 PVPLGPPGPPPPPVSPARPRTSS 485
             P      PPPP SP  P  +S
Sbjct: 229 APPSTSASHPPPPRSPGTPPRAS 251

 Score = 32.0 bits (71), Expect = 8.6
 Identities = 41/140 (29%), Positives = 49/140 (34%), Gaps = 25/140 (17%)
 Frame = +3

Query: 147 PGCLRAPH*TAEPVPRRDYPNSQ--SWPITCIK---------SRWPRPGPSASTRRMPWP 293
           P   RAP     P PRR +  S+  S+  TC +         SR  R  P+  +RR   P
Sbjct: 53  PCAPRAP--PRSPPPRRRHRGSRHRSFRPTCARRSGRRCPAPSRHARRNPAGPSRRCGPP 110

Query: 294 RSFGTARV*K---APRRCRPARRPVGLRTLGRTTSRT-----------RRRCARKPVPLG 431
           R     R      AP RCR AR      + GRT                 RC   P P  
Sbjct: 111 RKSTPTRCCTPCPAPPRCR-ARPSAPAPSAGRTCPTAGPSSCASGCCPTGRCGSAPGPTP 169

Query: 432 PPGPPPPPVSPARPRTSSPG 491
               P PP     P  +S G
Sbjct: 170 HGAEPSPPSQSPSPAPASSG 189

 Score = 24.6 bits (52), Expect(2) = 0.006
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 493 GAAGGGAAGGAREPQEGGG*PEPPAQQP 576
           G    G  G A  P   G  P PP+Q P
Sbjct: 154 GCCPTGRCGSAPGPTPHGAEPSPPSQSP 181



EST assemble image


clone accession position
1 LCL080h05_r AV630568 1 497
2 MXL042d07_r BP095475 129 600
3 HC043a03_r AV635184 198 669
4 LC076b08_r AV624324 448 650




Chlamydomonas reinhardtii
Kazusa DNA Research Institute