KCC001986A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001986A_C01 KCC001986A_c01
CTGGAACGATGCAGACGCTTAGCAAGAACGCTATTAAGGCCTCGCCGCGCCCTGCGGCGC
GCATGCCCGCAAGCGTGCGTCCGTTCACTTCCTCGGTCAAGCCGGTTGTCTCTCGTGTCT
CGGTTATTTCCCATGCGACTCTTGCGGAGACCAAGGCGGTCCCTGTGATGGAGAAGGGCG
AGCTAAGCCAGTTCCCCGGCTCGGCTGGTGTCTACGCCGTTTACGATAAGAACGGCACGC
TGCAATACATTGGCCTGTCGCGCAAGGTATCCGCCAGCGTTGCGACTCACATGCAGGAGC
TGCCCGACCTGACCGGCTCCATCAAGTACAACATCGTCGACGACGCCAGCCGGGAGGGCC
TGACGGCCGCCTGGAAGTCCTGGGTGGAGGAGACCGTGGCTGAGGCCGGCATCATCCCTC
CCGGCAACGCCCCCGGCGAGACCAAGTGGCAGTCGCGCAGTGTGGCGCGCGCCACCAAGC
CCGAGATCCGCCTCACGGACGGCAAGCCCATCCAGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001986A_C01 KCC001986A_c01
         (516 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM64346.1| unknown [Arabidopsis thaliana]                         108  4e-23
ref|NP_565885.1| expressed protein [Arabidopsis thaliana] gi|748...   108  4e-23
gb|AAN60257.1| unknown [Arabidopsis thaliana]                         108  4e-23
ref|ZP_00109493.1| hypothetical protein [Nostoc punctiforme]           60  2e-08
ref|NP_440492.1| unknown protein [Synechocystis sp. PCC 6803] gi...    55  4e-07

>gb|AAM64346.1| unknown [Arabidopsis thaliana]
          Length = 293

 Score =  108 bits (270), Expect = 4e-23
 Identities = 50/126 (39%), Positives = 83/126 (65%)
 Frame = +3

Query: 138 TLAETKAVPVMEKGELSQFPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPDLTG 317
           +L ET+ +P+ E   +   P ++GVYAVYDK+  LQ++G+SR ++ASV+ H++ +P+L G
Sbjct: 68  SLTETELLPITEADSI---PSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCG 124

Query: 318 SIKYNIVDDASREGLTAAWKSWVEETVAEAGIIPPGNAPGETKWQSRSVARATKPEIRLT 497
           S+K  IV++  +  LT AWK W+EE +   G +PPGN  G   +  ++  +  K +IRLT
Sbjct: 125 SVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGNKSGNNTFVKQTPRK--KSDIRLT 182

Query: 498 DGKPIQ 515
            G+ ++
Sbjct: 183 PGRHVE 188

>ref|NP_565885.1| expressed protein [Arabidopsis thaliana] gi|7485588|pir||T01258
           hypothetical protein At2g38270 [imported] - Arabidopsis
           thaliana gi|3335374|gb|AAC27175.1| expressed protein
           [Arabidopsis thaliana] gi|26449971|dbj|BAC42106.1|
           unknown protein [Arabidopsis thaliana]
           gi|27752307|gb|AAO19648.1| CAXIP1-like protein
           [Arabidopsis thaliana] gi|28827326|gb|AAO50507.1|
           unknown protein [Arabidopsis thaliana]
          Length = 293

 Score =  108 bits (270), Expect = 4e-23
 Identities = 50/126 (39%), Positives = 83/126 (65%)
 Frame = +3

Query: 138 TLAETKAVPVMEKGELSQFPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPDLTG 317
           +L ET+ +P+ E   +   P ++GVYAVYDK+  LQ++G+SR ++ASV+ H++ +P+L G
Sbjct: 68  SLTETELLPITEADSI---PSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCG 124

Query: 318 SIKYNIVDDASREGLTAAWKSWVEETVAEAGIIPPGNAPGETKWQSRSVARATKPEIRLT 497
           S+K  IV++  +  LT AWK W+EE +   G +PPGN  G   +  ++  +  K +IRLT
Sbjct: 125 SVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGNKSGNNTFVKQTPRK--KSDIRLT 182

Query: 498 DGKPIQ 515
            G+ ++
Sbjct: 183 PGRHVE 188

>gb|AAN60257.1| unknown [Arabidopsis thaliana]
          Length = 293

 Score =  108 bits (270), Expect = 4e-23
 Identities = 50/126 (39%), Positives = 83/126 (65%)
 Frame = +3

Query: 138 TLAETKAVPVMEKGELSQFPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPDLTG 317
           +L ET+ +P+ E   +   P ++GVYAVYDK+  LQ++G+SR ++ASV+ H++ +P+L G
Sbjct: 68  SLTETELLPITEADSI---PSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCG 124

Query: 318 SIKYNIVDDASREGLTAAWKSWVEETVAEAGIIPPGNAPGETKWQSRSVARATKPEIRLT 497
           S+K  IV++  +  LT AWK W+EE +   G +PPGN  G   +  ++  +  K +IRLT
Sbjct: 125 SVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGNKSGNNTFVKQTPRK--KSDIRLT 182

Query: 498 DGKPIQ 515
            G+ ++
Sbjct: 183 PGRHVE 188

>ref|ZP_00109493.1| hypothetical protein [Nostoc punctiforme]
          Length = 182

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 35/107 (32%), Positives = 56/107 (51%), Gaps = 2/107 (1%)
 Frame = +3

Query: 135 ATLAETKAVPVME-KGEL-SQFPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPD 308
           ++LA  + +P ++  G+L  QF G  GVYA++D+   LQ++G SR V  S+  H+   P 
Sbjct: 8   SSLAALEYIPYIDYSGQLPEQFQGKIGVYAIFDQEKVLQFVGYSRDVYLSLKQHLVRQPQ 67

Query: 309 LTGSIKYNIVDDASREGLTAAWKSWVEETVAEAGIIPPGNAPGETKW 449
               +K   ++  SR  L     +W    +AE G +P GN   + KW
Sbjct: 68  QCYWVKIQTIERPSRTILENTENAW----IAENGSVPWGNGDNKEKW 110

>ref|NP_440492.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470326|pir||S75258
           hypothetical protein slr1035 - Synechocystis sp. (strain
           PCC 6803) gi|1652249|dbj|BAA17172.1|
           ORF_ID:slr1035~unknown protein [Synechocystis sp. PCC
           6803]
          Length = 175

 Score = 55.5 bits (132), Expect = 4e-07
 Identities = 35/114 (30%), Positives = 55/114 (47%), Gaps = 2/114 (1%)
 Frame = +3

Query: 171 EKGELS-QFPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPDLTGSIKYNIVDDA 347
           E GE+   +    GVYA++D++  LQY+G SR ++ S+  H+   P+    +K +I+D  
Sbjct: 19  EAGEIDPNYEKRIGVYAIFDQHQNLQYVGYSRNLAISLLQHLVRQPEHCHGLKVHIIDRP 78

Query: 348 SREGLTAAWKSWVEETVAEAGIIPPGNAPGETKW-QSRSVARATKPEIRLTDGK 506
            R+ L      W+       G  PPGN   +  W +S +V     PE   T  K
Sbjct: 79  DRQLLVQIQNHWL------VGQNPPGNGESQKIWAESINVQDYWTPEEAATVAK 126



EST assemble image


clone accession position
1 HC040a09_r AV634952 1 513
2 MX015a01_r BP086710 1 496
3 HC057d03_r AV636277 11 516




Chlamydomonas reinhardtii
Kazusa DNA Research Institute