KCC001984A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001984A_C01 KCC001984A_c01
caacaaAATAGTGAAAGATGGTGGCGTCGTCGTCCTCATCCCAGCCTTTGAGCTTCCCTC
GCACCTTTCTAGCGAGCGCAATAGCGGCATGCACTGCCGAGGCGCTTACCCTGCCGCTGG
ACACGGCCAAGGTGCGCCTGCAGCTGCAGGCCGGGGGCAACAAGTACAAGGGTATGCTTG
GCACGGTTGCGACGATCGCCCGCGAGGAGGGTCCTGCATCTCTGTGGAAGGGCATTGAGC
CCGGCCTGCATCGGCAATGTTTGTTCGGCGGTCTGCGCATCGGCCTTTACGAGCCGGTTC
GCAACCTGTACGTGGGCAAGGACTTCAAGGGCGACCCGCCCCTGCACCTCAAGATCGCGG
CGGGCCTCACCACCGGCGCCCTGGGCATCAGCGTTGCCAGTCCCACCGACCTGGTGAAGG
TACGCATGCAATCGGAGGGCAAGCTGGCTCCCGGTGTGGCCAAGAAGTACCCCAGCGCCA
TCGCCGCCTACGGCATCATCGCGCGGGAGGAGGGCATCCTGGGCCTGTGGAAGGGTCTGG
GGCCCAACATCGCGCGTAACGCCATCATCAACGCGGCCGAGCTGGCCAGCTACGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001984A_C01 KCC001984A_c01
         (596 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190979.1| uncoupling protein (ucp/PUMP) [Arabidopsis thal...   267  7e-71
pir||T52024 uncoupling protein [imported] - Arabidopsis thaliana...   264  8e-70
gb|AAL87666.1|AF461732_1 uncoupling protein [Zea mays]                262  2e-69
dbj|BAC06495.1| mitochondrial uncoupling protein [Helicodiceros ...   257  1e-67
gb|AAL82482.1|AF472619_1 putative uncoupling protein [Lycopersic...   256  1e-67

>ref|NP_190979.1| uncoupling protein (ucp/PUMP) [Arabidopsis thaliana]
           gi|11277068|pir||T47570 uncoupling protein [imported] -
           Arabidopsis thaliana gi|3451392|emb|CAA04638.1|
           mitochondrial uncoupling protein [Arabidopsis thaliana]
           gi|4127446|emb|CAA77109.1| uncoupling protein
           [Arabidopsis thaliana] gi|6822057|emb|CAB70985.1|
           uncoupling protein (ucp/PUMP) [Arabidopsis thaliana]
           gi|7673023|gb|AAF66705.1|AF146226_1 putative uncoupling
           protein PUMP2 [Arabidopsis thaliana]
           gi|15810467|gb|AAL07121.1| putative uncoupling protein
           ucp/PUMP [Arabidopsis thaliana]
           gi|20259563|gb|AAM14124.1| putative uncoupling protein
           [Arabidopsis thaliana]
          Length = 306

 Score =  267 bits (683), Expect = 7e-71
 Identities = 137/200 (68%), Positives = 154/200 (76%), Gaps = 7/200 (3%)
 Frame = +3

Query: 18  MVASSSSSQPLSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQAGG-------NKYKGM 176
           MVA+  S   LS P+TF  SA AAC  E  T+PLDTAKVRLQLQ           KY+G+
Sbjct: 1   MVAAGKSD--LSLPKTFACSAFAACVGEVCTIPLDTAKVRLQLQKSALAGDVTLPKYRGL 58

Query: 177 LGTVATIAREEGPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDPPLHLKI 356
           LGTV TIAREEG  SLWKG+ PGLHRQCLFGGLRIG+YEPV+NLYVGKDF GD PL  KI
Sbjct: 59  LGTVGTIAREEGLRSLWKGVVPGLHRQCLFGGLRIGMYEPVKNLYVGKDFVGDVPLSKKI 118

Query: 357 AAGLTTGALGISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKG 536
            AGLTTGALGI VA+PTDLVKVR+Q+EGKLA G  ++Y  A+ AY  I R+EG+  LW G
Sbjct: 119 LAGLTTGALGIMVANPTDLVKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQEGVRALWTG 178

Query: 537 LGPNIARNAIINAAELASYD 596
           LGPN+ARNAIINAAELASYD
Sbjct: 179 LGPNVARNAIINAAELASYD 198

 Score = 68.9 bits (167), Expect = 5e-11
 Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 6/177 (3%)
 Frame = +3

Query: 45  PLSFPRTFLASAIAACTAEALTLPLDTAKVRLQ----LQAGG-NKYKGMLGTVATIAREE 209
           PLS  +  LA          +  P D  KVRLQ    L AG   +Y G L   +TI R+E
Sbjct: 113 PLS--KKILAGLTTGALGIMVANPTDLVKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQE 170

Query: 210 GPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVG-KDFKGDPPLHLKIAAGLTTGALG 386
           G  +LW G+ P + R  +     +  Y+ V+   +    F  +   H  I +GL  G   
Sbjct: 171 GVRALWTGLGPNVARNAIINAAELASYDQVKETILKIPGFTDNVVTH--ILSGLGAGFFA 228

Query: 387 ISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIAR 557
           + + SP D+VK RM        G +  Y   I  +    + +G +  +KG  PN  R
Sbjct: 229 VCIGSPVDVVKSRMM-------GDSGAYKGTIDCFVKTLKSDGPMAFYKGFIPNFGR 278

>pir||T52024 uncoupling protein [imported] - Arabidopsis thaliana
           gi|3115108|emb|CAA11757.1| plant uncoupling
           mitochondrial protein [Arabidopsis thaliana]
          Length = 306

 Score =  264 bits (674), Expect = 8e-70
 Identities = 136/200 (68%), Positives = 153/200 (76%), Gaps = 7/200 (3%)
 Frame = +3

Query: 18  MVASSSSSQPLSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQAGG-------NKYKGM 176
           MVA+  S   LS P+TF  SA AAC  E  T+PLDTAKVRLQLQ           KY+G+
Sbjct: 1   MVAAGKSD--LSLPKTFACSAFAACVGEVCTIPLDTAKVRLQLQKSALAGDVTLPKYRGL 58

Query: 177 LGTVATIAREEGPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDPPLHLKI 356
           LGTV TIAREEG  SLWKG+ PGLHRQCLFGGLRIG+YEPV+NLYVGKDF GD PL  KI
Sbjct: 59  LGTVGTIAREEGLRSLWKGVVPGLHRQCLFGGLRIGMYEPVKNLYVGKDFVGDVPLSKKI 118

Query: 357 AAGLTTGALGISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKG 536
            AGLTTGALGI VA+PTDLVKVR+Q+EGKLA G  ++Y  A+ AY  I R+EG+  LW  
Sbjct: 119 LAGLTTGALGIMVANPTDLVKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQEGVRALWTV 178

Query: 537 LGPNIARNAIINAAELASYD 596
           LGPN+ARNAIINAAELASYD
Sbjct: 179 LGPNVARNAIINAAELASYD 198

 Score = 65.5 bits (158), Expect = 6e-10
 Identities = 51/177 (28%), Positives = 75/177 (41%), Gaps = 6/177 (3%)
 Frame = +3

Query: 45  PLSFPRTFLASAIAACTAEALTLPLDTAKVRLQ----LQAGG-NKYKGMLGTVATIAREE 209
           PLS  +  LA          +  P D  KVRLQ    L AG   +Y G L   +TI R+E
Sbjct: 113 PLS--KKILAGLTTGALGIMVANPTDLVKVRLQAEGKLAAGAPRRYSGALNAYSTIVRQE 170

Query: 210 GPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVG-KDFKGDPPLHLKIAAGLTTGALG 386
           G  +LW  + P + R  +     +  Y+ V+   +    F  +   H  I +GL  G   
Sbjct: 171 GVRALWTVLGPNVARNAIINAAELASYDQVKETILKIPGFTDNVVTH--ILSGLGAGFFA 228

Query: 387 ISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIAR 557
           + + SP D+VK RM        G +  Y   I  +    + +G +  +KG  PN  R
Sbjct: 229 VCIGSPVDVVKSRMM-------GDSGAYKGTIDCFVKTLKSDGPMAFYKGFIPNFGR 278

>gb|AAL87666.1|AF461732_1 uncoupling protein [Zea mays]
          Length = 310

 Score =  262 bits (670), Expect = 2e-69
 Identities = 136/206 (66%), Positives = 157/206 (76%), Gaps = 13/206 (6%)
 Frame = +3

Query: 18  MVASSSSSQPLSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQ-------AGGN----- 161
           M     S   +SF   F ASAIAAC AE  T+PLDTAKVRLQLQ       A G+     
Sbjct: 1   MPGDHGSKGDISFAGRFTASAIAACFAEICTIPLDTAKVRLQLQKNVVAAAASGDAAPAL 60

Query: 162 -KYKGMLGTVATIAREEGPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDP 338
            KY+G+LGT ATIAREEG A+LWKGI PGLHRQC++GGLRIGLYEPV++ YVGKD  GD 
Sbjct: 61  PKYRGLLGTAATIAREEGAAALWKGIVPGLHRQCIYGGLRIGLYEPVKSFYVGKDHVGDV 120

Query: 339 PLHLKIAAGLTTGALGISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGI 518
           PL  KIAAG TTGA+ IS+A+PTDLVKVR+Q+EGKLAPGV ++Y  A+ AY  IAR+EG+
Sbjct: 121 PLSKKIAAGFTTGAIAISIANPTDLVKVRLQAEGKLAPGVPRRYTGAMDAYSKIARQEGV 180

Query: 519 LGLWKGLGPNIARNAIINAAELASYD 596
             LW GLGPN+ARNAIINAAELASYD
Sbjct: 181 AALWTGLGPNVARNAIINAAELASYD 206

 Score = 75.1 bits (183), Expect = 7e-13
 Identities = 56/170 (32%), Positives = 78/170 (44%), Gaps = 6/170 (3%)
 Frame = +3

Query: 66  FLASAIAACTAEALTLPLDTAKVRLQLQ---AGG--NKYKGMLGTVATIAREEGPASLWK 230
           F   AIA   A     P D  KVRLQ +   A G   +Y G +   + IAR+EG A+LW 
Sbjct: 130 FTTGAIAISIAN----PTDLVKVRLQAEGKLAPGVPRRYTGAMDAYSKIARQEGVAALWT 185

Query: 231 GIEPGLHRQCLFGGLRIGLYEPVR-NLYVGKDFKGDPPLHLKIAAGLTTGALGISVASPT 407
           G+ P + R  +     +  Y+ V+ ++     FK D   HL   AGL  G   + V SP 
Sbjct: 186 GLGPNVARNAIINAAELASYDQVKQSILKLPGFKDDVVTHL--FAGLGAGFFAVCVGSPV 243

Query: 408 DLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIAR 557
           D+VK RM  +          Y S +  +    + +G L  +KG  PN AR
Sbjct: 244 DVVKSRMMGD--------SAYKSTLDCFVKTLKNDGPLAFYKGFLPNFAR 285

 Score = 31.6 bits (70), Expect = 8.8
 Identities = 19/69 (27%), Positives = 30/69 (42%)
 Frame = +3

Query: 114 PLDTAKVRLQLQAGGNKYKGMLGTVATIAREEGPASLWKGIEPGLHRQCLFGGLRIGLYE 293
           P+D  K R+    G + YK  L       + +GP + +KG  P   R   +  +     E
Sbjct: 242 PVDVVKSRMM---GDSAYKSTLDCFVKTLKNDGPLAFYKGFLPNFARLGSWNVIMFLTLE 298

Query: 294 PVRNLYVGK 320
            V+ L+V K
Sbjct: 299 QVQKLFVRK 307

>dbj|BAC06495.1| mitochondrial uncoupling protein [Helicodiceros muscivorus]
          Length = 304

 Score =  257 bits (656), Expect = 1e-67
 Identities = 134/201 (66%), Positives = 155/201 (76%), Gaps = 8/201 (3%)
 Frame = +3

Query: 18  MVASSSSSQPLSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQ----AGGN----KYKG 173
           M    S    +SF   F +SA AAC AE  T+PLDTAKVRLQLQ    AG      KY+G
Sbjct: 1   MGGHDSGRSDISFGGRFASSAFAACFAELCTIPLDTAKVRLQLQKKSVAGDGVSLPKYRG 60

Query: 174 MLGTVATIAREEGPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDPPLHLK 353
           MLGTVATIAREEG ++LWKGI PGLHRQCLFGGLRIGLYEPV++ YVG+ F GD PL  K
Sbjct: 61  MLGTVATIAREEGLSALWKGIVPGLHRQCLFGGLRIGLYEPVKSFYVGEGFVGDVPLSKK 120

Query: 354 IAAGLTTGALGISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWK 533
           I AGLTTGAL I+VA+PTDLVKVR+Q+EGKL+PG+ ++Y  A+ AY  I ++EG+  LW 
Sbjct: 121 ILAGLTTGALAITVANPTDLVKVRLQAEGKLSPGIPRRYSGALNAYSTIVKQEGLGALWT 180

Query: 534 GLGPNIARNAIINAAELASYD 596
           GLGPNIARNAIINAAELASYD
Sbjct: 181 GLGPNIARNAIINAAELASYD 201

 Score = 70.1 bits (170), Expect = 2e-11
 Identities = 49/176 (27%), Positives = 75/176 (41%), Gaps = 5/176 (2%)
 Frame = +3

Query: 45  PLSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQAG-----GNKYKGMLGTVATIAREE 209
           PLS  +  LA       A  +  P D  KVRLQ +         +Y G L   +TI ++E
Sbjct: 116 PLS--KKILAGLTTGALAITVANPTDLVKVRLQAEGKLSPGIPRRYSGALNAYSTIVKQE 173

Query: 210 GPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDPPLHLKIAAGLTTGALGI 389
           G  +LW G+ P + R  +     +  Y+ V+   +      D  +   I AGL  G + +
Sbjct: 174 GLGALWTGLGPNIARNAIINAAELASYDQVKQTILKIPGFSD-NIFTHILAGLGAGFVAV 232

Query: 390 SVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIAR 557
            + SP D+VK RM  +          Y S +  +    + +G L  +KG  PN  R
Sbjct: 233 CIGSPVDVVKSRMMGD--------STYKSTLDCFIKTFKNDGPLAFYKGFIPNFGR 280

>gb|AAL82482.1|AF472619_1 putative uncoupling protein [Lycopersicon esculentum]
          Length = 306

 Score =  256 bits (655), Expect = 1e-67
 Identities = 131/191 (68%), Positives = 150/191 (77%), Gaps = 8/191 (4%)
 Frame = +3

Query: 48  LSFPRTFLASAIAACTAEALTLPLDTAKVRLQLQA--------GGNKYKGMLGTVATIAR 203
           +SF   F +SA AAC AEA TLPLDTAKVRLQLQ         G  KY+G+LGTV TIA+
Sbjct: 12  ISFAGIFASSAFAACFAEACTLPLDTAKVRLQLQKKAVEGDGLGLPKYRGLLGTVGTIAK 71

Query: 204 EEGPASLWKGIEPGLHRQCLFGGLRIGLYEPVRNLYVGKDFKGDPPLHLKIAAGLTTGAL 383
           EEG ASLWKGI PGLHRQC++GGLRIG+YEPV+NLYVGKD  GD PL  KI A LTTGAL
Sbjct: 72  EEGVASLWKGIVPGLHRQCIYGGLRIGMYEPVKNLYVGKDHVGDVPLSKKILAALTTGAL 131

Query: 384 GISVASPTDLVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIARNA 563
           GI+VA+PTDLVKVR+Q+EGKL  GV ++Y  A+ AY  I ++EG+  LW GLGPNI RNA
Sbjct: 132 GITVANPTDLVKVRLQAEGKLPAGVPRRYSGALNAYSTIVKQEGVRALWTGLGPNIGRNA 191

Query: 564 IINAAELASYD 596
           IINAAELASYD
Sbjct: 192 IINAAELASYD 202

 Score = 69.7 bits (169), Expect = 3e-11
 Identities = 51/169 (30%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
 Frame = +3

Query: 81  IAACTAEALTL----PLDTAKVRLQ----LQAG-GNKYKGMLGTVATIAREEGPASLWKG 233
           +AA T  AL +    P D  KVRLQ    L AG   +Y G L   +TI ++EG  +LW G
Sbjct: 123 LAALTTGALGITVANPTDLVKVRLQAEGKLPAGVPRRYSGALNAYSTIVKQEGVRALWTG 182

Query: 234 IEPGLHRQCLFGGLRIGLYEPVRNLYVG-KDFKGDPPLHLKIAAGLTTGALGISVASPTD 410
           + P + R  +     +  Y+ V+   +    F  +   HL   AGL  G   + + SP D
Sbjct: 183 LGPNIGRNAIINAAELASYDQVKEAVLRIPGFTDNVVTHL--IAGLGAGFFAVCIGSPVD 240

Query: 411 LVKVRMQSEGKLAPGVAKKYPSAIAAYGIIAREEGILGLWKGLGPNIAR 557
           +VK RM  +          Y + +  +    + +G L  +KG  PN  R
Sbjct: 241 VVKSRMMGD--------SAYKNTLDCFVKTLKNDGPLAFYKGFIPNFGR 281



EST assemble image


clone accession position
1 LCL031b05_r AV627724 1 243
2 LC040a01_r AV621708 7 576
3 HC039h05_r AV634938 11 552
4 HC094a12_r AV639030 17 401
5 MX005b02_r BP086250 237 373
6 MX037b09_r BP087551 237 615
7 MX216h02_r BP089972 260 495




Chlamydomonas reinhardtii
Kazusa DNA Research Institute