Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001983A_C01 KCC001983A_c01
(560 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_639059.1| conserved hypothetical protein [Xanthomonas cam... 39 0.063
dbj|BAB86150.1| P0413C03.26 [Oryza sativa (japonica cultivar-gro... 36 0.41
ref|NP_420094.1| tetracycline resistance protein [Caulobacter cr... 35 0.53
ref|NP_501260.1| putative nuclear protein, with 2 coiled coil do... 35 0.69
ref|NP_501261.1| putative protein, with a coiled coil-4 domain (... 35 0.69
>ref|NP_639059.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913] gi|21114988|gb|AAM42971.1|
conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 237
Score = 38.5 bits (88), Expect = 0.063
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -2
Query: 439 YCAARQPAITAPPLSIPL-PPARLASRALQLPRTAAPTAVPVHTRKASAPHVC*RPHIAL 263
Y ARQPA + P+ P PPA SRA R+AAP PV R+A + L
Sbjct: 60 YAQARQPAPVSVPVPAPAQPPAAPKSRARN-KRSAAPAPAPVSARQALSE--------LL 110
Query: 262 NEMLARDALVAH---GNKTAARLGPSWQALSSFHKRCCSV 152
+M AL++ GN A P AL F + +V
Sbjct: 111 TQMAGHTALLSDSSTGNAAHAPQFPELPALDDFRRTWATV 150
>dbj|BAB86150.1| P0413C03.26 [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 35.8 bits (81), Expect = 0.41
Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 439 YCAARQPAITAPPLSIPLPPARLASRALQLPRTAAPT--AVPVHTRKASAPHVC*RP 275
Y A P I+ PP PP LA A RTAAPT A P R+ + PH+ RP
Sbjct: 42 YLRAHSPHISPPPP----PPPLLAGAAAIAHRTAAPTSSAAPTPLRRVADPHLRRRP 94
>ref|NP_420094.1| tetracycline resistance protein [Caulobacter crescentus CB15]
gi|25397794|pir||B87408 tetracycline resistance protein
[imported] - Caulobacter crescentus
gi|13422616|gb|AAK23262.1| tetracycline resistance
protein [Caulobacter crescentus CB15]
Length = 586
Score = 35.4 bits (80), Expect = 0.53
Identities = 37/118 (31%), Positives = 45/118 (37%), Gaps = 9/118 (7%)
Frame = +2
Query: 56 WPEA*GRCRSWRSAPPPTAQTIA-GRLQAGRRNYGTAAFVEGGEGLPTWPQPGSCFITVR 232
W GR R A T +A GRL G + G F GG G P R
Sbjct: 66 WQGVRGRRRQRLGARRATGVRLASGRLHPGHEHRGRGPFRSGGRGDP------------R 113
Query: 233 HQRVTS----EHFVKGYVWTSADMRCG----SFTSVHGNSGRGCGAG*LKRSRGEARG 382
H R + +G W S +CG ++ V SGR CGAG + RG RG
Sbjct: 114 HGRASRLGQRACAARGASWLS---QCGFPGPTWGMVAQPSGRACGAGQQRPPRGGRRG 168
>ref|NP_501260.1| putative nuclear protein, with 2 coiled coil domains (77.1 kD)
(4I480) [Caenorhabditis elegans] gi|7500406|pir||T32557
hypothetical protein F33D4.6b - Caenorhabditis elegans
gi|2662623|gb|AAB88379.1| Hypothetical protein F33D4.6b
[Caenorhabditis elegans]
Length = 672
Score = 35.0 bits (79), Expect = 0.69
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 427 RQPAITAPPLSIPLPPARLASRALQLPRTAAPTAVPVHTR 308
++P IT PPL +PLPP L AL +P TAA + R
Sbjct: 191 QEPMITLPPL-VPLPPVPLQMPALHIPTTAAQPVTEIMYR 229
>ref|NP_501261.1| putative protein, with a coiled coil-4 domain (4I480)
[Caenorhabditis elegans] gi|25396093|pir||E88736 protein
F33D4.6a [imported] - Caenorhabditis elegans
Length = 412
Score = 35.0 bits (79), Expect = 0.69
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -2
Query: 427 RQPAITAPPLSIPLPPARLASRALQLPRTAAPTAVPVHTR 308
++P IT PPL +PLPP L AL +P TAA + R
Sbjct: 191 QEPMITLPPL-VPLPPVPLQMPALHIPTTAAQPVTEIMYR 229
