KCC001981A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001981A_C01 KCC001981A_c01
ATAACGTAATACATTCCCGCGAAACAACCACACAGACGGCCGGGGAGAGTTCCATTCTTC
GCGGCAAACTTGAAAATCTTTCCGAGCCGAGCAGGGAAATGGCCGTCAGCGTCGTGGCTG
TGCGTGCTCTGAACAATCCTGCGCTATTTACGGATCCGCTAGCGTTTGAGATTGAGTATG
AAGCGCTAACGGCATTGGAACAAGACCTGGCGTGGAAGCTGGTATATGTGGGCTCCGCGG
ACTCGGACCGCTACGACCAAGAGCTGGAAAACGTGGAGGTTGGGCCCGTGGTGCAGGGCA
ACTTCAAATTTGTGCTTGAAGCCAACCCGCCGAAGCCCGAACTCATCCCCGTCGACGACC
TGCTCGGCGTGACCGTCATTCTCCTCACCTGCTCTTACCGCGGCCGCGAGTTCATCCGCG
TCGGCTACTATGTCAACAACGAGTACGTGGATGAGGAGCTGCGGGAAAATCCGCCCGAGC
AGCCGCGTCTGGACCGGCTGCAGCGGAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001981A_C01 KCC001981A_c01
         (510 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA85456.1| S-locus protein 7 [Brassica rapa]                     171  5e-42
ref|XP_332128.1| hypothetical protein [Neurospora crassa] gi|289...   170  8e-42
ref|NP_176846.1| (ASF1a) anti-silencing function 1a protein [Ara...   169  2e-41
ref|NP_012420.1| anti-silencing protein that causes depression o...   167  7e-41
ref|NP_198627.1| anti-silencing factor 1-related protein [Arabid...   166  1e-40

>dbj|BAA85456.1| S-locus protein 7 [Brassica rapa]
          Length = 188

 Score =  171 bits (433), Expect = 5e-42
 Identities = 79/127 (62%), Positives = 101/127 (79%)
 Frame = +3

Query: 129 LNNPALFTDPLAFEIEYEALTALEQDLAWKLVYVGSADSDRYDQELENVEVGPVVQGNFK 308
           L+NPA F  P  FEI YE LT+L+ DL WKLVYVGSA+ + YDQ LE+V VGPV  GN++
Sbjct: 1   LDNPAPFVSPFQFEISYECLTSLQDDLEWKLVYVGSAEDETYDQTLESVLVGPVNVGNYR 60

Query: 309 FVLEANPPKPELIPVDDLLGVTVILLTCSYRGREFIRVGYYVNNEYVDEELRENPPEQPR 488
           FVL+A+PP P  I  +D++GVTV+LLTCSY G+EF+RVGYYVNN+Y DE+LRE PP +  
Sbjct: 61  FVLQADPPDPSKIREEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDEQLREEPPTKVL 120

Query: 489 LDRLQRS 509
           LD++QR+
Sbjct: 121 LDKVQRN 127

>ref|XP_332128.1| hypothetical protein [Neurospora crassa] gi|28919962|gb|EAA29352.1|
           hypothetical protein [Neurospora crassa]
          Length = 271

 Score =  170 bits (431), Expect = 8e-42
 Identities = 80/135 (59%), Positives = 103/135 (76%)
 Frame = +3

Query: 105 VSVVAVRALNNPALFTDPLAFEIEYEALTALEQDLAWKLVYVGSADSDRYDQELENVEVG 284
           VS++ V  +NNPA FTD   FEI +E L  LE+DL WKL YVGSA SD YDQEL+++ VG
Sbjct: 4   VSLLGVNVMNNPAKFTDKYLFEITFECLEHLEKDLEWKLTYVGSATSDNYDQELDSLLVG 63

Query: 285 PVVQGNFKFVLEANPPKPELIPVDDLLGVTVILLTCSYRGREFIRVGYYVNNEYVDEELR 464
           P+  G  KF+ EA PP  + IP+D+LLGVTVILLTC+Y GREF+RVGYYVNNEY  EEL 
Sbjct: 64  PIPVGVNKFIFEAEPPDTKRIPIDELLGVTVILLTCAYDGREFVRVGYYVNNEYESEELI 123

Query: 465 ENPPEQPRLDRLQRS 509
            +PP +P +++++R+
Sbjct: 124 NDPPPKPVIEKIRRN 138

>ref|NP_176846.1| (ASF1a) anti-silencing function 1a protein [Arabidopsis thaliana]
           gi|12597765|gb|AAG60078.1|AC013288_12 hypothetical
           protein [Arabidopsis thaliana]
           gi|17644153|gb|AAL38774.1| unknown protein [Arabidopsis
           thaliana] gi|20465461|gb|AAM20190.1| unknown protein
           [Arabidopsis thaliana] gi|27530936|dbj|BAC54103.1|
           anti-silencing function 1a [Arabidopsis thaliana]
          Length = 196

 Score =  169 bits (427), Expect = 2e-41
 Identities = 76/136 (55%), Positives = 103/136 (74%)
 Frame = +3

Query: 102 AVSVVAVRALNNPALFTDPLAFEIEYEALTALEQDLAWKLVYVGSADSDRYDQELENVEV 281
           A+ +  V  L+NPA F  P  FEI YE L +L+ DL WKL+YVGSA+ + YDQ LE+V V
Sbjct: 3   AIKITNVAVLHNPAPFVSPFQFEISYECLNSLKDDLEWKLIYVGSAEDETYDQLLESVLV 62

Query: 282 GPVVQGNFKFVLEANPPKPELIPVDDLLGVTVILLTCSYRGREFIRVGYYVNNEYVDEEL 461
           GPV  GN++FV +A+PP P  I  +D++GVTV+LLTCSY G+EF+RVGYYVNN+Y DE+L
Sbjct: 63  GPVNVGNYRFVFQADPPDPSKIQEEDIIGVTVLLLTCSYMGQEFLRVGYYVNNDYEDEQL 122

Query: 462 RENPPEQPRLDRLQRS 509
           +E PP +  +D++QR+
Sbjct: 123 KEEPPTKVLIDKVQRN 138

>ref|NP_012420.1| anti-silencing protein that causes depression of silent loci when
           overexpressed; Asf1p [Saccharomyces cerevisiae]
           gi|416657|sp|P32447|ASF1_YEAST Anti-silencing protein 1
           gi|320638|pir||S30766 ASF1 protein - yeast
           (Saccharomyces cerevisiae) gi|171091|gb|AAC37512.1| ASF1
           [Saccharomyces cerevisiae] gi|1008304|emb|CAA89410.1|
           ASF1 [Saccharomyces cerevisiae]
          Length = 279

 Score =  167 bits (423), Expect = 7e-41
 Identities = 80/135 (59%), Positives = 103/135 (76%)
 Frame = +3

Query: 105 VSVVAVRALNNPALFTDPLAFEIEYEALTALEQDLAWKLVYVGSADSDRYDQELENVEVG 284
           VS++ ++ LNNPA FTDP  FEI +E L +L+ DL WKL YVGS+ S  +DQEL+++ VG
Sbjct: 4   VSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVG 63

Query: 285 PVVQGNFKFVLEANPPKPELIPVDDLLGVTVILLTCSYRGREFIRVGYYVNNEYVDEELR 464
           PV  G  KFV  A+PP  ELIP  +L+ VTVILL+CSY GREF+RVGYYVNNEY +EELR
Sbjct: 64  PVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELR 123

Query: 465 ENPPEQPRLDRLQRS 509
           ENPP + ++D + R+
Sbjct: 124 ENPPAKVQVDHIVRN 138

>ref|NP_198627.1| anti-silencing factor 1-related protein [Arabidopsis thaliana]
           gi|8885615|dbj|BAA97545.1| anti-silencing protein-like
           [Arabidopsis thaliana] gi|18252971|gb|AAL62412.1|
           anti-silencing factor 1-like protein [Arabidopsis
           thaliana] gi|21389673|gb|AAM48035.1| anti-silencing
           factor 1-like protein [Arabidopsis thaliana]
           gi|21554344|gb|AAM63451.1| anti-silencing factor 1-like
           protein [Arabidopsis thaliana]
           gi|27530938|dbj|BAC54104.1| anti-silencing function 1b
           [Arabidopsis thaliana]
          Length = 218

 Score =  166 bits (421), Expect = 1e-40
 Identities = 77/136 (56%), Positives = 105/136 (76%)
 Frame = +3

Query: 102 AVSVVAVRALNNPALFTDPLAFEIEYEALTALEQDLAWKLVYVGSADSDRYDQELENVEV 281
           ++++  V  L+NPA F +P  FEI YE LT+L+ DL WKL+YVGSA+ + YDQ LE+V V
Sbjct: 3   SINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESVLV 62

Query: 282 GPVVQGNFKFVLEANPPKPELIPVDDLLGVTVILLTCSYRGREFIRVGYYVNNEYVDEEL 461
           GPV  GN++FVL+A+ P P  I  +D++GVTV+LLTCSY  +EFIRVGYYVNN+Y DE+L
Sbjct: 63  GPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDEQL 122

Query: 462 RENPPEQPRLDRLQRS 509
           RE PP +  +D++QR+
Sbjct: 123 REEPPTKVLIDKVQRN 138



EST assemble image


clone accession position
1 MX031h02_r BP087322 1 548
2 LCL090b04_r AV631197 85 544
3 HC039f05_r AV634915 98 453
4 MX006c02_r BP086302 99 609




Chlamydomonas reinhardtii
Kazusa DNA Research Institute