KCC001979A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001979A_C01 KCC001979A_c01
attaaGCTTGGGCTTGATATCAGTCATCTTGTAGCACGACATTCAAACGCCTCTGCACTT
GGCTTGCTTGACTGTAGAATCGTTGCCACCGAGAACCACGGACTTTATCAAGTCGAAGGA
TTGAAAGCTGCACGTGCAATCAGCTGCACCAGTCTGCACCGCTTGTTTGGAACCCGACCG
CCGACCGCTTAACTCCCTCTTGCCGTCCCAAAATGCACAGCATTAAGTCGTCTCGTGCTG
TGGCACCTGCCCGCCGGACTATGGCTGTGTCAGCTGTGGCTGCTCCCATGCCGTCGCCCA
AGGCCAGCTCCAACGGAAACGGCGGTGGCCCGCACCCTGTGCTCAACGTTAAGGCCACCA
TGGATGACATTAACAAGCAGCTGGGGTCCTTCATGAAGCAGGTGGCCAGCAGCAGCTCTC
TGGAGAAGATTAACAAGGGCATCGGCCAGGAGATCTCCAAGGCTGCGCTGGATAAGTTCC
GGCGGCAGTAAGGCGCGCGCAGTGTGCGCAACCCTGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001979A_C01 KCC001979A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_826301.1| putative membrane protein [Streptomyces avermit...    35  0.44
gb|AAF80392.1|AF160480_1 histidinol dehydrogenase [Corynebacteri...    35  0.75
emb|CAA74980.1| type I keratin K18 [Scyliorhinus stellaris]            35  0.75
dbj|BAC57643.1| putative cinnamoyl-CoA reductase [Oryza sativa (...    34  0.98
ref|NP_012284.1| Required for invasion and pseudohyphae formatio...    34  0.98

>ref|NP_826301.1| putative membrane protein [Streptomyces avermitilis MA-4680]
           gi|29608783|dbj|BAC72836.1| putative membrane protein
           [Streptomyces avermitilis MA-4680]
          Length = 272

 Score = 35.4 bits (80), Expect = 0.44
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = +3

Query: 150 QSAPLVWNPTADRLTPSCRPKMHSIKSSRAVAPARRTMAVSAVAAPM----PSPKASSNG 317
           Q  P +    + R +P    ++    S R     RR+  + A AA M    P    + NG
Sbjct: 81  QGTPAIGESLSARPSPRLAERLVDEVSERRALKRRRSFFMLAAAAAMIIGGPLVVMAVNG 140

Query: 318 NGGGPHPVLNVKATMDDINKQLGSFMKQVASSSSLEKINKGIGQE 452
           +GGG  PV +  +   D    +    K+++++ S  K+N  I  +
Sbjct: 141 DGGGKEPVASATSPAKDAFMHMS---KKISATDSSTKVNAVIAMD 182

>gb|AAF80392.1|AF160480_1 histidinol dehydrogenase [Corynebacterium glutamicum]
          Length = 432

 Score = 34.7 bits (78), Expect = 0.75
 Identities = 28/95 (29%), Positives = 38/95 (39%), Gaps = 10/95 (10%)
 Frame = +3

Query: 90  REPRTLSSRRIESCTCNQLHQSAPLVWNPTADRLTPSCR----------PKMHSIKSSRA 239
           RE    S RR+   T ++ H S PL ++  A  L+ SCR               IK    
Sbjct: 84  RESIEESIRRVRKFTLSKSHPSTPLNFHQVAPSLSVSCRLIAWDCTFQAAMRVPIKRDYE 143

Query: 240 VAPARRTMAVSAVAAPMPSPKASSNGNGGGPHPVL 344
             PA+     S V A  P  +     +GG PHP +
Sbjct: 144 YCPAQEAGVNSLVVASPPQAE-----HGGWPHPTI 173

>emb|CAA74980.1| type I keratin K18 [Scyliorhinus stellaris]
          Length = 415

 Score = 34.7 bits (78), Expect = 0.75
 Identities = 22/71 (30%), Positives = 38/71 (52%)
 Frame = +3

Query: 198 SCRPKMHSIKSSRAVAPARRTMAVSAVAAPMPSPKASSNGNGGGPHPVLNVKATMDDINK 377
           S R  M    S+ +++   + MAVS ++       +SS+  G G   V N K TM D+N 
Sbjct: 17  SIRRSMPLQSSASSISGYGQRMAVSRISRVASLGSSSSSAAGIGMGGVGNQKETMQDLND 76

Query: 378 QLGSFMKQVAS 410
           +L +++++V S
Sbjct: 77  RLATYLEKVHS 87

>dbj|BAC57643.1| putative cinnamoyl-CoA reductase [Oryza sativa (japonica
           cultivar-group)]
          Length = 327

 Score = 34.3 bits (77), Expect = 0.98
 Identities = 18/61 (29%), Positives = 35/61 (56%), Gaps = 4/61 (6%)
 Frame = +3

Query: 129 CTCNQLHQSAPLVW----NPTADRLTPSCRPKMHSIKSSRAVAPARRTMAVSAVAAPMPS 296
           C    LH ++P       +P A+ + P+ R  +H ++++R  A ARR +  S+++A +P+
Sbjct: 75  CRAGVLHVASPCTLADPRDPQAELVEPAVRGTLHVLEAARG-AGARRVVVTSSISAMVPN 133

Query: 297 P 299
           P
Sbjct: 134 P 134

>ref|NP_012284.1| Required for invasion and pseudohyphae formation in response to
            nitrogen starvation; Muc1p [Saccharomyces cerevisiae]
            gi|728850|sp|P08640|AMYH_YEAST Glucoamylase S1/S2
            precursor (Glucan 1,4-alpha-glucosidase)
            (1,4-alpha-D-glucan glucohydrolase) gi|626156|pir||S48478
            glucan 1,4-alpha-glucosidase (EC 3.2.1.3) - yeast
            (Saccharomyces cerevisiae) gi|557822|emb|CAA86176.1| mal5
            [Saccharomyces cerevisiae] gi|1304387|gb|AAC49609.1|
            glucoamylase [Saccharomyces cerevisiae var. diastaticus]
          Length = 1367

 Score = 34.3 bits (77), Expect = 0.98
 Identities = 21/88 (23%), Positives = 36/88 (40%)
 Frame = +3

Query: 153  SAPLVWNPTADRLTPSCRPKMHSIKSSRAVAPARRTMAVSAVAAPMPSPKASSNGNGGGP 332
            SAP+  + T     P   P   + +SS A  P   +    + +AP+P+P +S+  +   P
Sbjct: 749  SAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSVAP 808

Query: 333  HPVLNVKATMDDINKQLGSFMKQVASSS 416
             P  +  + +         F     SSS
Sbjct: 809  VPTPSSSSNITSSAPSSTPFSSSTESSS 836

 Score = 33.1 bits (74), Expect = 2.2
 Identities = 20/75 (26%), Positives = 33/75 (43%)
 Frame = +3

Query: 108 SSRRIESCTCNQLHQSAPLVWNPTADRLTPSCRPKMHSIKSSRAVAPARRTMAVSAVAAP 287
           SS  + S T      SAP+  + T     P   P   + +SS A  P   +    + +AP
Sbjct: 679 SSAPVTSSTTES--SSAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP 736

Query: 288 MPSPKASSNGNGGGP 332
           +P+P +S+  +   P
Sbjct: 737 VPTPSSSTTESSSAP 751

 Score = 32.7 bits (73), Expect = 2.9
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +3

Query: 153 SAPLVWNPTADRLTPSCRPKMHSIKSSRAVAPARRTMAVSAVAAPMPSPKASSNGNGGGP 332
           SAP+  + T     P   P   + +SS A  P   +    + +AP+P+P +S+  +   P
Sbjct: 623 SAPVTSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAPVPTPSSSTTESSSAP 682



EST assemble image


clone accession position
1 LC078e01_r AV624492 1 494
2 MX021a11_r BP086944 6 397
3 HC039b05_r AV634875 13 529
4 LC007b06_r AV619355 15 490
5 HC091d12_r AV638836 48 520
6 MX224f01_r BP090481 48 354




Chlamydomonas reinhardtii
Kazusa DNA Research Institute