KCC001976A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001976A_C01 KCC001976A_c01
ctggcccgcctcaaggccggtgccgcacgccagggcgcgctgctgagccacgtgccgccc
gagctggacgtgagggcgcaCGTGCGCTCGGTGTTCAGGCGCGCCGTCGCGGCCAATGCC
CACGGCCATGCAGCCGCGAAGAAGAAAGCGCCGGCGGCGCTAACTACGGATGTTCTTAGA
ACCGGCATGGCATGAAGGAACGTGAAGGCAATGATTCCTGCGTGAAAATAGAGCATACTG
GATTCATGCTGCTGTGTTCATCAAACTTTCATCATGATCCACGTCAGGGTGCACGCATGC
ATGGCCTATAACCCATAAGGTGGGTCCCATATTGCATTACGACATGTGCACGACTAATGC
GTTACGCACATTGCGACATTCTGAGGCTCAATCCGCCTTATTCATGGCATCCATGCGCAG
CTACTGCGCGCGTGCGTTTGACTTTCAGGGGTTTGACGAGATCGTGGTCCCCGCCAAGGT
CCCCGCCAAAGGGAGAAGTGGGCTGCGCCCACGCCATGTCTCCCATC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001976A_C01 KCC001976A_c01
         (527 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P39881|CUT1_CANFA CCAAT displacement protein (Homeobox protei...    37  0.16
gb|AAK81660.1| unknown [Burkholderia cepacia]                          35  0.46
ref|ZP_00007297.1| COG1469: Uncharacterized conserved protein [R...    35  0.78
gb|AAB62575.1| short form of CHIP [Drosophila melanogaster]            34  1.0
ref|ZP_00092426.1| COG0022: Pyruvate/2-oxoglutarate dehydrogenas...    33  2.3

>sp|P39881|CUT1_CANFA CCAAT displacement protein (Homeobox protein Clox) (Clox-1)
           gi|423173|pir||S33121 homeotic protein CDP - dog
           (fragment) gi|2202|emb|CAA48782.1| Clox [Canis sp.]
          Length = 975

 Score = 37.0 bits (84), Expect = 0.16
 Identities = 22/49 (44%), Positives = 26/49 (52%), Gaps = 1/49 (2%)
 Frame = -2

Query: 157 PPALSSSRLHGRGHWPRRRA*T-PSARAPSRPARAARGSAARPGVRHRP 14
           P    S R  G G  P RR    P+  AP+ PA AARG + RPG R +P
Sbjct: 823 PAEKRSRRPRGPGPGPGRRGGGGPAPGAPAAPAAAARGPSRRPGARAKP 871

>gb|AAK81660.1| unknown [Burkholderia cepacia]
          Length = 334

 Score = 35.4 bits (80), Expect = 0.46
 Identities = 21/46 (45%), Positives = 25/46 (53%), Gaps = 10/46 (21%)
 Frame = +3

Query: 6   PPQGRCRTPGRAAEP---------RAARAGREG-ARALGVQARRRG 113
           PP GR  TP R +EP         +  RAGR+G  R LG + RRRG
Sbjct: 150 PPVGRTGTPSRQSEPVPEDALPAVQGIRAGRQGLVRGLGARHRRRG 195

>ref|ZP_00007297.1| COG1469: Uncharacterized conserved protein [Rhodobacter
           sphaeroides]
          Length = 646

 Score = 34.7 bits (78), Expect = 0.78
 Identities = 21/44 (47%), Positives = 23/44 (51%)
 Frame = -2

Query: 160 APPALSSSRLHGRGHWPRRRA*TPSARAPSRPARAARGSAARPG 29
           A PAL     HGR   PR R   PSA  P  P+RA +  AAR G
Sbjct: 119 ARPALPRDGRHGREDRPRARG--PSAARPRDPSRAGKPPAARDG 160

>gb|AAB62575.1| short form of CHIP [Drosophila melanogaster]
          Length = 182

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 21/46 (45%), Positives = 25/46 (53%)
 Frame = -2

Query: 151 ALSSSRLHGRGHWPRRRA*TPSARAPSRPARAARGSAARPGVRHRP 14
           A+S  +L G    P  R    SA +  RPARA R + ARPG  HRP
Sbjct: 116 AISMVQLAG----PSARHPRDSASSAGRPARALRLTVARPGTSHRP 157

>ref|ZP_00092426.1| COG0022: Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit [Azotobacter vinelandii]
          Length = 397

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 31/97 (31%), Positives = 37/97 (37%)
 Frame = +3

Query: 6   PPQGRCRTPGRAAEPRAARAGREGARALGVQARRRGQCPRPCSREEESAGGANYGCS*NR 185
           P QGR    G   E R     R  AR  G  A RRG  PRP  R     GG + GC   R
Sbjct: 2   PRQGR---GGSVEEARTDPHLRRSARGPG--AARRGGPPRPGGR----GGGRSGGCGGLR 52

Query: 186 HGMKEREGNDSCVKIEHTGFMLLCSSNFHHDPRQGAR 296
            G +   G     +    G   +   ++    RQG R
Sbjct: 53  RGRQPGAGRGPAARCLRLGLDPMSRVSYREALRQGLR 89



EST assemble image


clone accession position
1 HC038h02_r AV634857 1 530
2 MX044f02_r BP087834 147 265




Chlamydomonas reinhardtii
Kazusa DNA Research Institute