KCC001970A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001970A_C01 KCC001970A_c01
ATATAGCCACATCTTAAAGCACTGTTGAATTTGAGGAGCATAAAAGAGCAACTTGTCAAA
GGAGCTGCTCGCAACTCGCTTGACGGGCCCGGCGCAAAAATGTCGGTGTGGATGCCCCCA
GGCGGAGGTAGGCAACGTGGGAGCCCGGCCACTCGCTCGCGCGTGCTCAGGGGCTCATTC
TACTTCCTGCAGGCTCAGGTTCCATGGCCCCGCCTTCTCAAAGCCACCTGGTATGCGGAG
GATGCCGCTGCCTGCTGATGTATCCCCAAGTAAGTCTGACTTGGGCAGCAACTGCCTTGT
ACACGTTTGACGCGCAAGCAGGCCGTGTACGAGGCCAGGTGCCCCTCGCCTCCTCGTGTC
TCCGTCAACTGTCCCCTTGCCCCGGCTCCTGCCGTCGCCATCACGCAACCAAGGCGCCTC
CAATGTCCGCTGCTCACGATGTGGACACATCACATCTGCACCAGCATCAGCCGGCGCGGA
CAGCTCCCAAATCGTGTGCAACGGGTGCCGGGTGCTCCTCAGCTACCCGCGCGGCGCGCA
GAGCGTCCAGTGCTCGCTTTGCCACGCGGTGACGCAGGTGCCGGTGTACGGGCATCTGGT
GTGCAACGGGCTGCAGCATCATGCTCATGTACCCGGTGGGCGCACAAAGCGTCAAGTGCT
CAGTGTGCCACTACGTAACGCCCGTCACCGCGGCCACGGCGGCGGCGGGCGGCGCGAGTG
GCTCGGTTCCAGCGGCACGACCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001970A_C01 KCC001970A_c01
         (743 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_849742.1| zinc-finger protein -related [Arabidopsis thali...    63  1e-10
ref|NP_564405.1| zinc-finger protein -related [Arabidopsis thali...    63  1e-10
pir||H86450 probable zinc-finger protein, 7043-7771 [imported] -...    63  2e-10
dbj|BAC66724.1| P0672D01.2 [Oryza sativa (japonica cultivar-group)]    62  4e-10
ref|NP_849549.1| zinc-finger protein Lsd1 [Arabidopsis thaliana]...    63  5e-10

>ref|NP_849742.1| zinc-finger protein -related [Arabidopsis thaliana]
          Length = 159

 Score = 62.8 bits (151), Expect = 6e-09
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
 Frame = +2

Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
           P   P AP L  S +T P         +L+ S  RN      GA++V C+ C  +T+ P 
Sbjct: 7   PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66

Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
             G + +Q+VC GC  LL Y RGA SVQCS CH V
Sbjct: 67  P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100

 Score = 54.7 bits (130), Expect(2) = 1e-10
 Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
 Frame = +2

Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
           + P + G+ S  SQ+VC+GCR LL YP GA SV C++C+AVT VP  G     LVC G
Sbjct: 21  NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 47/167 (28%), Positives = 61/167 (36%)
 Frame = +3

Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLR 365
           P  +GS +   QS LVC GCR LLMYP  + +          A        VP   + + 
Sbjct: 23  PPANGSTS--GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTA--------VPPPGTEMA 72

Query: 366 QLSPCPGSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRA 545
           QL  C G C     T    +  A  V  S  H    A  A +      G           
Sbjct: 73  QLV-C-GGCH----TLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCG----------- 115

Query: 546 SSARFATR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPV 686
                                 C ++LMY  GA+SVKC+VC++VT V
Sbjct: 116 ---------------------NCMMLLMYQYGARSVKCAVCNFVTSV 141

 Score = 38.9 bits (89), Expect = 0.086
 Identities = 17/27 (62%), Positives = 21/27 (76%)
 Frame = +3

Query: 606 TGCSIMLMYPVGAQSVKCSVCHYVTPV 686
           +GC  +LMYPVGA SV C+VC+ VT V
Sbjct: 38  SGCRNLLMYPVGATSVCCAVCNAVTAV 64

 Score = 33.9 bits (76), Expect(2) = 1e-10
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
           GC  +LMY  GA SV+CS CH V     A   A
Sbjct: 78  GCHTLLMYIRGATSVQCSCCHTVNLALEANQVA 110

>ref|NP_564405.1| zinc-finger protein -related [Arabidopsis thaliana]
           gi|16323143|gb|AAL15306.1| At1g32540/T9G5_1 [Arabidopsis
           thaliana] gi|21436015|gb|AAM51585.1| At1g32540/T9G5_1
           [Arabidopsis thaliana] gi|33867796|gb|AAQ55219.1|
           LSD1-like [Arabidopsis thaliana]
          Length = 154

 Score = 62.8 bits (151), Expect = 6e-09
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
 Frame = +2

Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
           P   P AP L  S +T P         +L+ S  RN      GA++V C+ C  +T+ P 
Sbjct: 7   PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66

Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
             G + +Q+VC GC  LL Y RGA SVQCS CH V
Sbjct: 67  P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100

 Score = 54.7 bits (130), Expect(2) = 1e-10
 Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
 Frame = +2

Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
           + P + G+ S  SQ+VC+GCR LL YP GA SV C++C+AVT VP  G     LVC G
Sbjct: 21  NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78

 Score = 44.3 bits (103), Expect = 0.002
 Identities = 48/172 (27%), Positives = 64/172 (36%)
 Frame = +3

Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLR 365
           P  +GS +   QS LVC GCR LLMYP  + +          A        VP   + + 
Sbjct: 23  PPANGSTS--GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTA--------VPPPGTEMA 72

Query: 366 QLSPCPGSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRA 545
           QL  C G C     T    +  A  V  S  H    A  A +      G           
Sbjct: 73  QLV-C-GGCH----TLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCG----------- 115

Query: 546 SSARFATR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPVTAATA 701
                                 C ++LMY  GA+SVKC+VC++VT V  +T+
Sbjct: 116 ---------------------NCMMLLMYQYGARSVKCAVCNFVTSVGGSTS 146

 Score = 33.9 bits (76), Expect(2) = 1e-10
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
           GC  +LMY  GA SV+CS CH V     A   A
Sbjct: 78  GCHTLLMYIRGATSVQCSCCHTVNLALEANQVA 110

>pir||H86450 probable zinc-finger protein, 7043-7771 [imported] - Arabidopsis
           thaliana gi|12322448|gb|AAG51243.1|AC055769_2
           zinc-finger protein, putative; 7043-7771 [Arabidopsis
           thaliana]
          Length = 110

 Score = 62.8 bits (151), Expect = 6e-09
 Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
 Frame = +2

Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
           P   P AP L  S +T P         +L+ S  RN      GA++V C+ C  +T+ P 
Sbjct: 7   PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66

Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
             G + +Q+VC GC  LL Y RGA SVQCS CH V
Sbjct: 67  P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100

 Score = 54.7 bits (130), Expect(2) = 2e-10
 Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
 Frame = +2

Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
           + P + G+ S  SQ+VC+GCR LL YP GA SV C++C+AVT VP  G     LVC G
Sbjct: 21  NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78

 Score = 38.9 bits (89), Expect = 0.086
 Identities = 17/27 (62%), Positives = 21/27 (76%)
 Frame = +3

Query: 606 TGCSIMLMYPVGAQSVKCSVCHYVTPV 686
           +GC  +LMYPVGA SV C+VC+ VT V
Sbjct: 38  SGCRNLLMYPVGATSVCCAVCNAVTAV 64

 Score = 33.1 bits (74), Expect(2) = 2e-10
 Identities = 14/23 (60%), Positives = 16/23 (68%)
 Frame = +3

Query: 609 GCSIMLMYPVGAQSVKCSVCHYV 677
           GC  +LMY  GA SV+CS CH V
Sbjct: 78  GCHTLLMYIRGATSVQCSCCHTV 100

 Score = 33.1 bits (74), Expect = 4.7
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYP 266
           P  +GS +   QS LVC GCR LLMYP
Sbjct: 23  PPANGSTS--GQSQLVCSGCRNLLMYP 47

>dbj|BAC66724.1| P0672D01.2 [Oryza sativa (japonica cultivar-group)]
          Length = 143

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 28/53 (52%), Positives = 36/53 (67%)
 Frame = +2

Query: 413 GASNVRCSRCGHITSAPASAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
           GA++V C+ C  +T+ PA  G + +Q+VC GC  LL Y RGA SVQCS CH V
Sbjct: 39  GATSVCCAVCSTVTAVPAP-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 90

 Score = 52.8 bits (125), Expect(2) = 4e-10
 Identities = 26/46 (56%), Positives = 30/46 (64%), Gaps = 4/46 (8%)
 Frame = +2

Query: 485 SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
           SQ+VC+GCR LL YP GA SV C++C  VT VP  G     LVC G
Sbjct: 23  SQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGG 68

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 48/164 (29%), Positives = 62/164 (37%), Gaps = 2/164 (1%)
 Frame = +3

Query: 210 PPS--QSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLRQLSPCP 383
           PP+  QS LVC GCR LLMYP  + +       T  A        VP   + + QL  C 
Sbjct: 17  PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTA--------VPAPGTEMAQLV-C- 66

Query: 384 GSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRASSARFA 563
           G C     T    +  A  V  S  H    A  A +      G                 
Sbjct: 67  GGCH----TLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCG----------------- 105

Query: 564 TR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPVTAA 695
                           C ++LMY  GA+SVKC+VC++VT V A+
Sbjct: 106 ---------------NCRMLLMYQYGARSVKCAVCNFVTSVGAS 134

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 23/57 (40%), Positives = 36/57 (62%)
 Frame = +2

Query: 410 QGASNVRCSRCGHITSAPASAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQV 580
           +GA++V+CS C H  +    A    + + C  CR+LL Y  GA+SV+C++C+ VT V
Sbjct: 77  RGATSVQCSCC-HTVNLAMEAN-QVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 131

 Score = 33.9 bits (76), Expect(2) = 4e-10
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
           GC  +LMY  GA SV+CS CH V     A   A
Sbjct: 68  GCHTLLMYIRGATSVQCSCCHTVNLAMEANQVA 100

>ref|NP_849549.1| zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|7488436|pir||T10580 zinc-finger protein Lsd1 -
           Arabidopsis thaliana gi|1872521|gb|AAC49660.1|
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|1872523|gb|AAC49661.1| zinc-finger protein Lsd1
           [Arabidopsis thaliana] gi|5262161|emb|CAB45804.1|
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|7268834|emb|CAB79038.1| zinc-finger protein Lsd1
           [Arabidopsis thaliana]
          Length = 189

 Score = 62.8 bits (151), Expect = 6e-09
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = +2

Query: 410 QGASNVRCSRCGHITSAPASAGA-DSSQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPV 586
           +GASNVRC+ C  I   P      D + I+C GCR +L Y RGA SV+CS C     VP 
Sbjct: 23  RGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPA 82

Query: 587 YGHLVCNGLQHHAHVPGGR 643
           + + V       AH P  +
Sbjct: 83  HSNQV-------AHAPSSQ 94

 Score = 53.1 bits (126), Expect(2) = 5e-10
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
 Frame = +2

Query: 488 QIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPV------YGHLVCNG 610
           Q+VC+GCR LL YPRGA +V+C+LC+ +  VP         H++C G
Sbjct: 9   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGG 55

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 30/64 (46%), Positives = 36/64 (55%), Gaps = 7/64 (10%)
 Frame = +2

Query: 410 QGASNVRCSRCGHITSAPAS----AGADSSQIV---CNGCRVLLSYPRGAQSVQCSLCHA 568
           +GAS+VRCS C      PA     A A SSQ+    C  CR  L YP GA SV+C++C  
Sbjct: 64  RGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQF 123

Query: 569 VTQV 580
           VT V
Sbjct: 124 VTNV 127

 Score = 43.1 bits (100), Expect = 0.005
 Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 4/160 (2%)
 Frame = +3

Query: 219 QSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLRQLSPCPGSCRR 398
           Q  LVC GCR LLMYP+                A  VR  +    + +  + P P     
Sbjct: 7   QDQLVCHGCRNLLMYPR---------------GASNVRCAL---CNTINMVPPPP----- 43

Query: 399 HHATKAPPMSAAHDV----DTSHLHQHQPARTAPKSCATGAGCSSATRAARRASSARFAT 566
                 PP   AH +     T  ++    +      C T     + +     A S++ A 
Sbjct: 44  ------PPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 97

Query: 567 R*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPV 686
                    I C   C   LMYP GA SVKC+VC +VT V
Sbjct: 98  ---------INCGH-CRTTLMYPYGASSVKCAVCQFVTNV 127

 Score = 33.1 bits (74), Expect(2) = 5e-10
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = +3

Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAAGGASGS 725
           GC  MLMY  GA SV+CS C     V A +     A  S
Sbjct: 55  GCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSS 93

 Score = 33.1 bits (74), Expect = 4.7
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +3

Query: 180 LLPAGSGSMA--PPSQ-SHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLA 350
           L+PA S  +A  P SQ + + CG CR  LMYP    +    A+  F        G+VPL 
Sbjct: 79  LVPAHSNQVAHAPSSQVAQINCGHCRTTLMYP-YGASSVKCAVCQFVTNVNMSNGRVPLP 137

Query: 351 SSCLRQLSPCPGSCRRHHATKAPP 422
           ++      P   +C    +T  PP
Sbjct: 138 TN-----RPNGTACPPSTSTSTPP 156



EST assemble image


clone accession position
1 LC037e05_r AV621540 1 544
2 HC036d04_r AV634678 120 694
3 LC053e06_r AV622717 205 743
4 MX049g12_r BP088032 214 682




Chlamydomonas reinhardtii
Kazusa DNA Research Institute