Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001970A_C01 KCC001970A_c01
(743 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_849742.1| zinc-finger protein -related [Arabidopsis thali... 63 1e-10
ref|NP_564405.1| zinc-finger protein -related [Arabidopsis thali... 63 1e-10
pir||H86450 probable zinc-finger protein, 7043-7771 [imported] -... 63 2e-10
dbj|BAC66724.1| P0672D01.2 [Oryza sativa (japonica cultivar-group)] 62 4e-10
ref|NP_849549.1| zinc-finger protein Lsd1 [Arabidopsis thaliana]... 63 5e-10
>ref|NP_849742.1| zinc-finger protein -related [Arabidopsis thaliana]
Length = 159
Score = 62.8 bits (151), Expect = 6e-09
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +2
Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
P P AP L S +T P +L+ S RN GA++V C+ C +T+ P
Sbjct: 7 PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66
Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
G + +Q+VC GC LL Y RGA SVQCS CH V
Sbjct: 67 P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
Frame = +2
Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
+ P + G+ S SQ+VC+GCR LL YP GA SV C++C+AVT VP G LVC G
Sbjct: 21 NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78
Score = 42.4 bits (98), Expect = 0.008
Identities = 47/167 (28%), Positives = 61/167 (36%)
Frame = +3
Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLR 365
P +GS + QS LVC GCR LLMYP + + A VP + +
Sbjct: 23 PPANGSTS--GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTA--------VPPPGTEMA 72
Query: 366 QLSPCPGSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRA 545
QL C G C T + A V S H A A + G
Sbjct: 73 QLV-C-GGCH----TLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCG----------- 115
Query: 546 SSARFATR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPV 686
C ++LMY GA+SVKC+VC++VT V
Sbjct: 116 ---------------------NCMMLLMYQYGARSVKCAVCNFVTSV 141
Score = 38.9 bits (89), Expect = 0.086
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = +3
Query: 606 TGCSIMLMYPVGAQSVKCSVCHYVTPV 686
+GC +LMYPVGA SV C+VC+ VT V
Sbjct: 38 SGCRNLLMYPVGATSVCCAVCNAVTAV 64
Score = 33.9 bits (76), Expect(2) = 1e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
GC +LMY GA SV+CS CH V A A
Sbjct: 78 GCHTLLMYIRGATSVQCSCCHTVNLALEANQVA 110
>ref|NP_564405.1| zinc-finger protein -related [Arabidopsis thaliana]
gi|16323143|gb|AAL15306.1| At1g32540/T9G5_1 [Arabidopsis
thaliana] gi|21436015|gb|AAM51585.1| At1g32540/T9G5_1
[Arabidopsis thaliana] gi|33867796|gb|AAQ55219.1|
LSD1-like [Arabidopsis thaliana]
Length = 154
Score = 62.8 bits (151), Expect = 6e-09
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +2
Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
P P AP L S +T P +L+ S RN GA++V C+ C +T+ P
Sbjct: 7 PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66
Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
G + +Q+VC GC LL Y RGA SVQCS CH V
Sbjct: 67 P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
Frame = +2
Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
+ P + G+ S SQ+VC+GCR LL YP GA SV C++C+AVT VP G LVC G
Sbjct: 21 NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78
Score = 44.3 bits (103), Expect = 0.002
Identities = 48/172 (27%), Positives = 64/172 (36%)
Frame = +3
Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLR 365
P +GS + QS LVC GCR LLMYP + + A VP + +
Sbjct: 23 PPANGSTS--GQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTA--------VPPPGTEMA 72
Query: 366 QLSPCPGSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRA 545
QL C G C T + A V S H A A + G
Sbjct: 73 QLV-C-GGCH----TLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCG----------- 115
Query: 546 SSARFATR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPVTAATA 701
C ++LMY GA+SVKC+VC++VT V +T+
Sbjct: 116 ---------------------NCMMLLMYQYGARSVKCAVCNFVTSVGGSTS 146
Score = 33.9 bits (76), Expect(2) = 1e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
GC +LMY GA SV+CS CH V A A
Sbjct: 78 GCHTLLMYIRGATSVQCSCCHTVNLALEANQVA 110
>pir||H86450 probable zinc-finger protein, 7043-7771 [imported] - Arabidopsis
thaliana gi|12322448|gb|AAG51243.1|AC055769_2
zinc-finger protein, putative; 7043-7771 [Arabidopsis
thaliana]
Length = 110
Score = 62.8 bits (151), Expect = 6e-09
Identities = 39/95 (41%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Frame = +2
Query: 323 PCTRPGAPRLLVSPSTVPL-------PRLLPSPSRNQ-----GASNVRCSRCGHITSAPA 466
P P AP L S +T P +L+ S RN GA++V C+ C +T+ P
Sbjct: 7 PYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPP 66
Query: 467 SAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
G + +Q+VC GC LL Y RGA SVQCS CH V
Sbjct: 67 P-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 100
Score = 54.7 bits (130), Expect(2) = 2e-10
Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 6/58 (10%)
Frame = +2
Query: 455 SAPASAGADS--SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
+ P + G+ S SQ+VC+GCR LL YP GA SV C++C+AVT VP G LVC G
Sbjct: 21 NTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGG 78
Score = 38.9 bits (89), Expect = 0.086
Identities = 17/27 (62%), Positives = 21/27 (76%)
Frame = +3
Query: 606 TGCSIMLMYPVGAQSVKCSVCHYVTPV 686
+GC +LMYPVGA SV C+VC+ VT V
Sbjct: 38 SGCRNLLMYPVGATSVCCAVCNAVTAV 64
Score = 33.1 bits (74), Expect(2) = 2e-10
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = +3
Query: 609 GCSIMLMYPVGAQSVKCSVCHYV 677
GC +LMY GA SV+CS CH V
Sbjct: 78 GCHTLLMYIRGATSVQCSCCHTV 100
Score = 33.1 bits (74), Expect = 4.7
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +3
Query: 186 PAGSGSMAPPSQSHLVCGGCRCLLMYP 266
P +GS + QS LVC GCR LLMYP
Sbjct: 23 PPANGSTS--GQSQLVCSGCRNLLMYP 47
>dbj|BAC66724.1| P0672D01.2 [Oryza sativa (japonica cultivar-group)]
Length = 143
Score = 61.6 bits (148), Expect = 1e-08
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +2
Query: 413 GASNVRCSRCGHITSAPASAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAV 571
GA++V C+ C +T+ PA G + +Q+VC GC LL Y RGA SVQCS CH V
Sbjct: 39 GATSVCCAVCSTVTAVPAP-GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTV 90
Score = 52.8 bits (125), Expect(2) = 4e-10
Identities = 26/46 (56%), Positives = 30/46 (64%), Gaps = 4/46 (8%)
Frame = +2
Query: 485 SQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPVYG----HLVCNG 610
SQ+VC+GCR LL YP GA SV C++C VT VP G LVC G
Sbjct: 23 SQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGG 68
Score = 46.2 bits (108), Expect = 5e-04
Identities = 48/164 (29%), Positives = 62/164 (37%), Gaps = 2/164 (1%)
Frame = +3
Query: 210 PPS--QSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLRQLSPCP 383
PP+ QS LVC GCR LLMYP + + T A VP + + QL C
Sbjct: 17 PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTA--------VPAPGTEMAQLV-C- 66
Query: 384 GSCRRHHATKAPPMSAAHDVDTSHLHQHQPARTAPKSCATGAGCSSATRAARRASSARFA 563
G C T + A V S H A A + G
Sbjct: 67 GGCH----TLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCG----------------- 105
Query: 564 TR*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPVTAA 695
C ++LMY GA+SVKC+VC++VT V A+
Sbjct: 106 ---------------NCRMLLMYQYGARSVKCAVCNFVTSVGAS 134
Score = 46.2 bits (108), Expect = 5e-04
Identities = 23/57 (40%), Positives = 36/57 (62%)
Frame = +2
Query: 410 QGASNVRCSRCGHITSAPASAGADSSQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQV 580
+GA++V+CS C H + A + + C CR+LL Y GA+SV+C++C+ VT V
Sbjct: 77 RGATSVQCSCC-HTVNLAMEAN-QVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSV 131
Score = 33.9 bits (76), Expect(2) = 4e-10
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +3
Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAA 707
GC +LMY GA SV+CS CH V A A
Sbjct: 68 GCHTLLMYIRGATSVQCSCCHTVNLAMEANQVA 100
>ref|NP_849549.1| zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|7488436|pir||T10580 zinc-finger protein Lsd1 -
Arabidopsis thaliana gi|1872521|gb|AAC49660.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872523|gb|AAC49661.1| zinc-finger protein Lsd1
[Arabidopsis thaliana] gi|5262161|emb|CAB45804.1|
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|7268834|emb|CAB79038.1| zinc-finger protein Lsd1
[Arabidopsis thaliana]
Length = 189
Score = 62.8 bits (151), Expect = 6e-09
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 410 QGASNVRCSRCGHITSAPASAGA-DSSQIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPV 586
+GASNVRC+ C I P D + I+C GCR +L Y RGA SV+CS C VP
Sbjct: 23 RGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPA 82
Query: 587 YGHLVCNGLQHHAHVPGGR 643
+ + V AH P +
Sbjct: 83 HSNQV-------AHAPSSQ 94
Score = 53.1 bits (126), Expect(2) = 5e-10
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 6/47 (12%)
Frame = +2
Query: 488 QIVCNGCRVLLSYPRGAQSVQCSLCHAVTQVPV------YGHLVCNG 610
Q+VC+GCR LL YPRGA +V+C+LC+ + VP H++C G
Sbjct: 9 QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGG 55
Score = 52.4 bits (124), Expect = 8e-06
Identities = 30/64 (46%), Positives = 36/64 (55%), Gaps = 7/64 (10%)
Frame = +2
Query: 410 QGASNVRCSRCGHITSAPAS----AGADSSQIV---CNGCRVLLSYPRGAQSVQCSLCHA 568
+GAS+VRCS C PA A A SSQ+ C CR L YP GA SV+C++C
Sbjct: 64 RGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQF 123
Query: 569 VTQV 580
VT V
Sbjct: 124 VTNV 127
Score = 43.1 bits (100), Expect = 0.005
Identities = 45/160 (28%), Positives = 60/160 (37%), Gaps = 4/160 (2%)
Frame = +3
Query: 219 QSHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLASSCLRQLSPCPGSCRR 398
Q LVC GCR LLMYP+ A VR + + + + P P
Sbjct: 7 QDQLVCHGCRNLLMYPR---------------GASNVRCAL---CNTINMVPPPP----- 43
Query: 399 HHATKAPPMSAAHDV----DTSHLHQHQPARTAPKSCATGAGCSSATRAARRASSARFAT 566
PP AH + T ++ + C T + + A S++ A
Sbjct: 44 ------PPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQ 97
Query: 567 R*RRCRCTGIWCATGCSIMLMYPVGAQSVKCSVCHYVTPV 686
I C C LMYP GA SVKC+VC +VT V
Sbjct: 98 ---------INCGH-CRTTLMYPYGASSVKCAVCQFVTNV 127
Score = 33.1 bits (74), Expect(2) = 5e-10
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +3
Query: 609 GCSIMLMYPVGAQSVKCSVCHYVTPVTAATAAAGGASGS 725
GC MLMY GA SV+CS C V A + A S
Sbjct: 55 GCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSS 93
Score = 33.1 bits (74), Expect = 4.7
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +3
Query: 180 LLPAGSGSMA--PPSQ-SHLVCGGCRCLLMYPQVSLTWAATALYTFDAQAGRVRGQVPLA 350
L+PA S +A P SQ + + CG CR LMYP + A+ F G+VPL
Sbjct: 79 LVPAHSNQVAHAPSSQVAQINCGHCRTTLMYP-YGASSVKCAVCQFVTNVNMSNGRVPLP 137
Query: 351 SSCLRQLSPCPGSCRRHHATKAPP 422
++ P +C +T PP
Sbjct: 138 TN-----RPNGTACPPSTSTSTPP 156