KCC001967A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001967A_C01 KCC001967A_c01
ttttttttttttttttgGCTTTTAGTGTTACACGAGTATGGTCCCAACGCCGCCAGGGCA
GCCACCAGCCCACACCCGCCCCACTCAGCCGCTGCCACGCCAACCAAGGCTGGTGTGCTG
AGCAGCAGCAGCACGGGGCACATGTGGCGCTTGGCACGCGCACCTGCCAACCTGTCCAGT
TCTCGAACCTACTCGGCCCCCGCTGTCGTACTACCGTAATACTAGCAGTTCCTAGCCGCA
ATCGAGTTGCCGTTCTAAGCCGCCAATGCATAGCTACCGAAACAATGGTCAAAGACTAGG
AACACGAACAACCTTGTCAACACGTGGAACGACAGGGCCACGCAGGCAATGACCCGTAAA
CCCCTACCAACACGCTCAATGGCACTCGGCACTAGGGTGCGCTCTCATGTTTCAACGCGC
CAGCTCCCATGGGGGAGACACTGTTCACACTGCTCGCATTCGTTCTTCCTCAGTGCCGCA
ACCAAACTTGGCTCTCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001967A_C01 KCC001967A_c01
         (497 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa ...    36  0.23
ref|XP_315988.1| ENSANGP00000005715 [Anopheles gambiae] gi|30175...    36  0.30
ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]         35  0.39
ref|XP_330568.1| predicted protein [Neurospora crassa] gi|289259...    35  0.51
emb|CAC03556.1| hypothetical protein L901.06 [Leishmania major]        35  0.66

>dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa (japonica
           cultivar-group)] gi|22093600|dbj|BAC06896.1| putative
           formin-like protein AHF1 [Oryza sativa (japonica
           cultivar-group)]
          Length = 960

 Score = 36.2 bits (82), Expect = 0.23
 Identities = 26/94 (27%), Positives = 39/94 (40%)
 Frame = +2

Query: 44  PTPPGQPPAHTRPTQPLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPTRPPLSYYRNT 223
           PT P  PP   +P  P P    L+   +A R T       +P  P ++P  PP     +T
Sbjct: 365 PTLPPPPPPRRKPPSPSPPSSPLIENTSALRSTT-TTDTTIPRNPFVQPPPPP----THT 419

Query: 224 SSS*PQSSCRSKPPMHSYRNNGQRLGTRTTLSTR 325
               P       PP+  + +  ++ GT T+  TR
Sbjct: 420 HGPPPPPPPPPPPPVGYWESRVRKPGTGTSKETR 453

>ref|XP_315988.1| ENSANGP00000005715 [Anopheles gambiae] gi|30175861|gb|EAA11805.2|
           ENSANGP00000005715 [Anopheles gambiae str. PEST]
          Length = 245

 Score = 35.8 bits (81), Expect = 0.30
 Identities = 28/84 (33%), Positives = 32/84 (37%), Gaps = 4/84 (4%)
 Frame = +2

Query: 26  CYTSMVPTPP---GQPPAHTRPTQ-PLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPT 193
           CY    PTPP     PP  TRP   P    P   C    +   C     ++P  P   PT
Sbjct: 158 CYVPPPPTPPPTRPPPPPPTRPPSCPAGGVPPYCCTNGGSGPNC-----YVPPPPTPPPT 212

Query: 194 RPPLSYYRNTSSS*PQSSCRSKPP 265
           RPP        SS P S+    PP
Sbjct: 213 RPPPPPPTRPPSSLPPSALPPGPP 236

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 22/63 (34%), Positives = 25/63 (38%), Gaps = 4/63 (6%)
 Frame = +2

Query: 26  CYTSMVPTPP---GQPPAHTRPTQ-PLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPT 193
           CY    PTPP     PP  TRP   P    P   C    +   C     ++P  P   PT
Sbjct: 115 CYVPPPPTPPPTRPPPPPPTRPPSCPAGGVPPYCCTNGGSGPNC-----YVPPPPTPPPT 169

Query: 194 RPP 202
           RPP
Sbjct: 170 RPP 172

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 22/63 (34%), Positives = 25/63 (38%), Gaps = 4/63 (6%)
 Frame = +2

Query: 26  CYTSMVPTPP---GQPPAHTRPTQ-PLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPT 193
           CY    PTPP     PP  TRP   P    P   C    +   C     ++P  P   PT
Sbjct: 72  CYVPPPPTPPPTRPPPPPPTRPPSCPAGGVPPYCCTNGGSGPNC-----YVPPPPTPPPT 126

Query: 194 RPP 202
           RPP
Sbjct: 127 RPP 129

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 22/63 (34%), Positives = 25/63 (38%), Gaps = 4/63 (6%)
 Frame = +2

Query: 26  CYTSMVPTPP---GQPPAHTRPTQ-PLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPT 193
           CY    PTPP     PP  TRP   P    P   C    +   C     ++P  P   PT
Sbjct: 29  CYVPPPPTPPPTRPPPPPPTRPPSCPAGGVPPYCCTNGGSGPNC-----YVPPPPTPPPT 83

Query: 194 RPP 202
           RPP
Sbjct: 84  RPP 86

>ref|XP_302837.1| hypothetical protein XP_302837 [Homo sapiens]
          Length = 250

 Score = 35.4 bits (80), Expect = 0.39
 Identities = 34/101 (33%), Positives = 39/101 (37%)
 Frame = +2

Query: 32  TSMVPTPPGQPPAHTRPTQPLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPTRPPLSY 211
           TS+  TPP   PA T PT+   R P     A+ AR    A  A  P  P   P R P   
Sbjct: 7   TSLTRTPPTASPARTPPTESPARTPPT---ASPARTPPRASPARTP--PRASPGRTP--- 58

Query: 212 YRNTSSS*PQSSCRSKPPMHSYRNNGQRLGTRTTLSTRGTT 334
                   P++S R  PP  S R    R   R T  T   T
Sbjct: 59  --------PRASPRRTPPRASPRRAPPRASPRRTPPTASPT 91

>ref|XP_330568.1| predicted protein [Neurospora crassa] gi|28925952|gb|EAA34945.1|
           predicted protein [Neurospora crassa]
          Length = 731

 Score = 35.0 bits (79), Expect = 0.51
 Identities = 31/108 (28%), Positives = 43/108 (39%)
 Frame = +2

Query: 41  VPTPPGQPPAHTRPTQPLPRQPRLVC*AAAARGTCGAWHAHLPTCPVLEPTRPPLSYYRN 220
           +P PP QPP   +P QP P+ P+     AA R     ++  LP             YY  
Sbjct: 175 IPEPP-QPPQPPQPPQP-PQPPQ----PAAIRSIFPRYNPELPL--------DRQDYYPT 220

Query: 221 TSSS*PQSSCRSKPPMHSYRNNGQRLGTRTTLSTRGTTGPRRQ*PVNP 364
            +S           PM+S R+  Q+    T   T G + PR +   NP
Sbjct: 221 QASPTHIPQSAISRPMYSARDTDQQSEVGTNAGTNGPSHPRNRPVANP 268

>emb|CAC03556.1| hypothetical protein L901.06 [Leishmania major]
          Length = 705

 Score = 34.7 bits (78), Expect = 0.66
 Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 5/129 (3%)
 Frame = +2

Query: 35  SMVPTPPGQPPAHTRPTQPLPRQPRLVC*AAAARGTCGAWHAHLPTCPVL--EPTRPPLS 208
           S+ P PP   P  + P    P         AAARG   A HA     PVL   P  PP  
Sbjct: 246 SVFPMPPHVLPQLSLPAVSAPTAE------AAARGMVAAPHAWAIPPPVLYPPPPPPPWW 299

Query: 209 YYRNTSSS*PQSSCRSKPPMHSYRNNGQRLGTRTTLSTRGTTGPRRQ*PVN---PYQHAQ 379
           +Y       P SS  S     S   + +   + + +S R TT P R    N   P+  A 
Sbjct: 300 FYGTHPLPLPASSSGSSA---SSTGSSRHASSSSPVSARSTTRPSRHPSANAARPHAEAA 356

Query: 380 WHSALGCAL 406
             S  G A+
Sbjct: 357 APSRHGVAV 365



EST assemble image


clone accession position
1 MXL046g01_r BP095743 1 432
2 HC036b02_r AV634655 16 497




Chlamydomonas reinhardtii
Kazusa DNA Research Institute