KCC001965A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001965A_C01 KCC001965A_c01
TACACTCCCCTCTCGACAAAGTTCTTCTTGAAAGTCTTCACTTACTCGCATACACGCACG
CACGATGGCCGCTCTGCAGAAGTCTTTCCTGGGCAACAAGGCCGGCTTCAAGTCGGCTGT
GCGCGGCTCGGCCTCGCGCCAGAGCAGCGTCGCCGTGAGCGCCCTGTTCCAGAAGACCAA
GGCTACCCCCAAGTCCGCCTACGTGTGCCTGGACTGGCGGCTACCTGTACGATGAGCCCA
CTCCCTTCGAGGAGGTCAAGGCATACGTGTGCCCCGTGTGCAACGCCCCCAAGCGCCGCT
TCAAGGAGCTGCGCGGCAACAAGCTGACCCGCAACGACCCCAAGTCCATGGTCACGCGCA
AGGAGGCCCTGCGTGCCCAGGTGGAGGCCGACGGCGGCAACCCCGACGAGGGCCAGAACG
AGTTCCTGATCTTCTCTGGCCTCACCGCTGTGGCGGCGCTGGCCTTCCTGGCCTACCTGA
ACATGCCCAAGTAAACTCCCAACTCCTAACCTACAACTGTTGTGTACCTGATGTGCACGA
CCTCCTGGTGTCGCACGAGCCATCAGGGGCAGTGACGGCCACGAGGCGGCGTGTTTGGGC
GTTGGACAAGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001965A_C01 KCC001965A_c01
         (612 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568749.1| expressed protein [Arabidopsis thaliana] gi|975...    45  0.001
ref|NP_203248.1| unknown [Epiphyas postvittana nucleopolyhedrovi...    44  0.001
pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    43  0.003
emb|CAC03679.1| SRM102 [Arabidopsis thaliana]                          42  0.007
ref|NP_180484.2| proline-rich protein -related [Arabidopsis thal...    42  0.007

>ref|NP_568749.1| expressed protein [Arabidopsis thaliana] gi|9758248|dbj|BAB08747.1|
           gene_id:K3K7.19~unknown protein [Arabidopsis thaliana]
           gi|15292669|gb|AAK92703.1| unknown protein [Arabidopsis
           thaliana] gi|19310697|gb|AAL85079.1| unknown protein
           [Arabidopsis thaliana] gi|21555410|gb|AAM63852.1|
           unknown [Arabidopsis thaliana]
          Length = 154

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 32/89 (35%), Positives = 48/89 (52%), Gaps = 1/89 (1%)
 Frame = +3

Query: 219 GYLYDEPTPFEEVKA-YVCPVCNAPKRRFKELRGNKLTRNDPKSMVTRKEALRAQVEADG 395
           GY+Y++ TPF+++   Y CPVC APKRRF+    +     + K +   ++A   + EA G
Sbjct: 70  GYIYNDRTPFDKLPDNYFCPVCAAPKRRFRAYMPDVSKNVNDKDVRKARKAELQRDEAVG 129

Query: 396 GNPDEGQNEFLIFSGLTAVAALAFLAYLN 482
                G     I  G+ A+AAL F  Y+N
Sbjct: 130 KALPIG-----IAVGVLALAALYF--YVN 151

>ref|NP_203248.1| unknown [Epiphyas postvittana nucleopolyhedrovirus]
           gi|15213204|gb|AAK85643.1| unknown [Epiphyas postvittana
           nucleopolyhedrovirus]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 36/103 (34%), Positives = 48/103 (45%), Gaps = 3/103 (2%)
 Frame = +1

Query: 214 LAATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWRPT 393
           L  T + +PLP+     + +P  +P    S + + T  P+ TPSP      P  P   PT
Sbjct: 36  LPPTPSPTPLPTPSPTPSPSPTPSPTPPPSPTPSPTPPPSPTPSPTPSPTPPPSPTPSPT 95

Query: 394 AATPTRARTSS*SSLASPLWRRWPS---WPT*TCPSKLPTPNL 513
             +PT + T S S L SP     PS   WPT   PS  P+P L
Sbjct: 96  -PSPTPSPTPSPSPLPSPTPSPTPSPTLWPT---PSPTPSPTL 134

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 28/76 (36%), Positives = 42/76 (54%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWRPTA 396
           AAT   +  P+R +R   A  AT  +AA+ + AAT+  A TP+  +RA  P  P    T 
Sbjct: 359 AATAATAATPARAAR--AATPATAATAATAATAATAATAATPARAARAATPATPATPATP 416

Query: 397 ATPTRARTSS*SSLAS 444
           ATP  A T++ ++ A+
Sbjct: 417 ATPATAATAATAATAA 432

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRH-TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWRPT 393
           AAT   +  P+R +R  T A  ATP +AA+ + AAT+  A T +  +RA R   P    T
Sbjct: 323 AATAATAATPARAARAATPATAATPATAATAATAATAATAATAATPARAARAATPATAAT 382

Query: 394 AATPTRARTSS 426
           AAT   A T++
Sbjct: 383 AATAATAATAA 393

 Score = 41.6 bits (96), Expect = 0.009
 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRH-TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWRPT 393
           AAT   +  P+R +R  T A  ATP +AA+ + AAT+  A TP   +RA  P       T
Sbjct: 86  AATAATAATPARAARAATPATAATPATAATAATAATAATAETP---ARAATPATAATPAT 142

Query: 394 AATPTRARTSS 426
           AATP  A T++
Sbjct: 143 AATPATAATAA 153

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 30/89 (33%), Positives = 43/89 (47%), Gaps = 10/89 (11%)
 Frame = +1

Query: 208 PGLAATCTMSPL---PSRRSRH-------TCAPCATPPSAASRSCAATS*PATTPSPWSR 357
           P  AAT   +P    P+R +R        T A  ATP + A+ + AAT   A T +  +R
Sbjct: 239 PATAATAATAPTAATPARAARAATPATAATLATAATPATPATPATAATDATAATAATPAR 298

Query: 358 ARRPCVPRWRPTAATPTRARTSS*SSLAS 444
           A  P  P    T ATP  A T++ ++ A+
Sbjct: 299 AATPATPATAATPATPATAATAATAATAA 327

 Score = 40.8 bits (94), Expect = 0.015
 Identities = 29/81 (35%), Positives = 39/81 (47%), Gaps = 4/81 (4%)
 Frame = +1

Query: 196 RLRVPGLAATCTMSPLPSRRSRH----TCAPCATPPSAASRSCAATS*PATTPSPWSRAR 363
           R   P  AAT       +R +R     T A  AT  +AA+ + AAT+  A TP+  +RA 
Sbjct: 166 RAATPATAATPATPATAARAARAATPATAATAATAATAATAATAATAATAATPARAARAA 225

Query: 364 RPCVPRWRPTAATPTRARTSS 426
            P       TAATP  A T++
Sbjct: 226 TPATAPTPATAATPATAATAA 246

 Score = 38.5 bits (88), Expect = 0.077
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = +1

Query: 220 ATCTMSPLPSRRSRH----TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWR 387
           AT   +  P+R +      T A  ATP +AA+ + AAT+  A TP+  +RA  P      
Sbjct: 288 ATAATAATPARAATPATPATAATPATPATAATAATAATAATAATPARAARAATPATAATP 347

Query: 388 PTAATPTRARTSS*SSLAS 444
            TAAT   A T++ ++ A+
Sbjct: 348 ATAATAATAATAATAATAA 366

 Score = 38.1 bits (87), Expect = 0.10
 Identities = 41/133 (30%), Positives = 56/133 (41%), Gaps = 18/133 (13%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRH-------TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCV 375
           AAT   +  P+R +R        T A  ATP +AA+   AAT+  A TP+  +RA  P  
Sbjct: 209 AATAATAATPARAARAATPATAPTPATAATPATAAT---AATAPTAATPARAARAATPAT 265

Query: 376 PRWRPTAATP-------TRARTSS*SSLASPLWRRWPSWP----T*TCPSKLPTPNLQLL 522
                TAATP       T A  ++ ++ A+P     P+ P    T   P+   T      
Sbjct: 266 AATLATAATPATPATPATAATDATAATAATPARAATPATPATAATPATPATAATAATAAT 325

Query: 523 CT*CARPPGVARA 561
               A P   ARA
Sbjct: 326 AATAATPARAARA 338

 Score = 37.4 bits (85), Expect = 0.17
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 196 RLRVPGLAATCTMSPLPSRRSRH-TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPC 372
           R   P  AAT   +  P+  +   T A  AT  +AA  +  AT+    TP+  +RA R  
Sbjct: 130 RAATPATAATPATAATPATAATAATAATSATAATAARAATPATAATPATPATAARAARAA 189

Query: 373 VPRWRPTAATPTRARTSS*SSLAS 444
            P    TAAT   A T++ ++ A+
Sbjct: 190 TPATAATAATAATAATAATAATAA 213

 Score = 36.2 bits (82), Expect = 0.38
 Identities = 27/76 (35%), Positives = 41/76 (53%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRWRPTA 396
           AAT   +  P+R +  T A  ATP +AA+ + AAT+  A T +  + A R   P    TA
Sbjct: 119 AATAATAETPARAA--TPATAATPATAATPATAATAATAATSATAATAARAATPA---TA 173

Query: 397 ATPTRARTSS*SSLAS 444
           ATP    T++ ++ A+
Sbjct: 174 ATPATPATAARAARAA 189

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 26/77 (33%), Positives = 35/77 (44%)
 Frame = +1

Query: 196 RLRVPGLAATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCV 375
           R   P  AAT   +  P+     T A  AT  + A+ + AAT   A TP+  + A  P  
Sbjct: 259 RAATPATAATLATAATPA-----TPATPATAATDATAATAATPARAATPATPATAATPAT 313

Query: 376 PRWRPTAATPTRARTSS 426
           P    TAAT   A T++
Sbjct: 314 PATAATAATAATAATAA 330

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 28/88 (31%), Positives = 39/88 (43%), Gaps = 1/88 (1%)
 Frame = +1

Query: 208 PGLAATC-TMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCVPRW 384
           P  AAT  T +   +  +  T A  AT P+ A  + AAT     TP+    A        
Sbjct: 419 PATAATAATAATAATAATAATAATAATAPTPARAARAATPATGATPATAPTAGTAATAAT 478

Query: 385 RPTAATPTRARTSS*SSLASPLWRRWPS 468
             TAATP RA T   ++ A+P+    P+
Sbjct: 479 AATAATPARASTP--ATAATPVTAATPA 504

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +1

Query: 196 RLRVPGLAATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCV 375
           R   P   AT      P+  +  T A  AT  +AA+ + AAT+  A TP+  +RA  P  
Sbjct: 403 RAATPATPATPATPATPATAA--TAATAATAATAATAATAATAATAPTPARAARAATPA- 459

Query: 376 PRWRPTAATPTRARTSS*SSLAS 444
                T ATP  A T+  ++ A+
Sbjct: 460 -----TGATPATAPTAGTAATAA 477

 Score = 33.5 bits (75), Expect = 2.5
 Identities = 40/146 (27%), Positives = 57/146 (38%), Gaps = 14/146 (9%)
 Frame = +1

Query: 196 RLRVPGLAATCTMSPLPSRRS----RHTCAPCATPPSAAS----------RSCAATS*PA 333
           R   P  AAT   +  P+  +      T A  ATP +AA+           + AAT+  A
Sbjct: 33  RAATPATAATPATAATPATAATAATEATAATAATPATAATPATAATAATTAATAATAATA 92

Query: 334 TTPSPWSRARRPCVPRWRPTAATPTRARTSS*SSLASPLWRRWPSWPT*TCPSKLPTPNL 513
            TP+  +RA  P       TAATP  A T++ ++ A+          T   P++  TP  
Sbjct: 93  ATPARAARAATPA------TAATPATAATAATAATAA----------TAETPARAATPAT 136

Query: 514 QLLCT*CARPPGVARAIRGSDGHEAA 591
                  A P   A A   +    AA
Sbjct: 137 AATPATAATPATAATAATAATSATAA 162

 Score = 32.0 bits (71), Expect = 7.2
 Identities = 25/76 (32%), Positives = 34/76 (43%), Gaps = 5/76 (6%)
 Frame = +1

Query: 214 LAATCTMSPLPSRRSRHTCAPCA-----TPPSAASRSCAATS*PATTPSPWSRARRPCVP 378
           L  +CT SP   +       P A     TP +AA+ + AAT   A T +  + A     P
Sbjct: 8   LGPSCTSSPRYEQHQLLVARPAAAARAATPATAATPATAATPATAATAATEATAATAATP 67

Query: 379 RWRPTAATPTRARTSS 426
               TAATP  A T++
Sbjct: 68  ---ATAATPATAATAA 80

 Score = 31.6 bits (70), Expect = 9.4
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
 Frame = +1

Query: 217 AATCTMSPLPSRRSRH-------TCAPCATPPSAASRSCAATS*PATTPSPWSRARRPCV 375
           AAT   +  P+R +R        T A  ATP +AA+ + AAT+  A T +  + A     
Sbjct: 389 AATAATAATPARAARAATPATPATPATPATPATAATAATAATAATAATAATAATAATAPT 448

Query: 376 PRWRPTAATPTRART 420
           P     AATP    T
Sbjct: 449 PARAARAATPATGAT 463

>emb|CAC03679.1| SRM102 [Arabidopsis thaliana]
          Length = 894

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
 Frame = +1

Query: 148 RRRERPVPEDQGY---PQVRLRVPGLAATCTMSPLPSRRSRHTCAPCA------TPPSAA 300
           RR  RP  E +     P  R R P   A    SP P  R R + +P A      TPP+  
Sbjct: 306 RRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQ 365

Query: 301 SRSCAATS*PATTPSPWSRARRPCVP-RWRPTAATPTRARTSS*SSLASPLWRR 459
            RS +  +    +P P  R R P  P R R + + P R R S      SPL+RR
Sbjct: 366 RRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRS-----PSPLYRR 414

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 48/164 (29%), Positives = 69/164 (41%), Gaps = 14/164 (8%)
 Frame = +1

Query: 58  THDGRSAEVFPGQQGRLQVGCARLGLAPEQ--RRRERPVPEDQGY-----PQVRLRVPGL 216
           TH+GR     P ++ R     AR   +P    RRR  P P  + +     P  + R P  
Sbjct: 312 THEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSP 371

Query: 217 AATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARR---PCVPRWR 387
            A    SP P+RR R       +PP+   RS +  +    +PSP  R  R   P   R R
Sbjct: 372 PARRHRSPPPARRRRSP-----SPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNR 426

Query: 388 PTAATPTRARTSS*SSLASPLWR-RWPS---WPT*TCPSKLPTP 507
             +    R R+ S     SP+ R R P+    P+ +   +LP+P
Sbjct: 427 SRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQRLPSP 470

>ref|NP_180484.2| proline-rich protein -related [Arabidopsis thaliana]
           gi|21928131|gb|AAM78093.1| At2g29210/F16P2.41
           [Arabidopsis thaliana] gi|23308459|gb|AAN18199.1|
           At2g29210/F16P2.41 [Arabidopsis thaliana]
          Length = 878

 Score = 42.0 bits (97), Expect = 0.007
 Identities = 39/114 (34%), Positives = 49/114 (42%), Gaps = 10/114 (8%)
 Frame = +1

Query: 148 RRRERPVPEDQGY---PQVRLRVPGLAATCTMSPLPSRRSRHTCAPCA------TPPSAA 300
           RR  RP  E +     P  R R P   A    SP P  R R + +P A      TPP+  
Sbjct: 290 RRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQ 349

Query: 301 SRSCAATS*PATTPSPWSRARRPCVP-RWRPTAATPTRARTSS*SSLASPLWRR 459
            RS +  +    +P P  R R P  P R R + + P R R S      SPL+RR
Sbjct: 350 RRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRS-----PSPLYRR 398

 Score = 41.2 bits (95), Expect = 0.012
 Identities = 48/164 (29%), Positives = 69/164 (41%), Gaps = 14/164 (8%)
 Frame = +1

Query: 58  THDGRSAEVFPGQQGRLQVGCARLGLAPEQ--RRRERPVPEDQGY-----PQVRLRVPGL 216
           TH+GR     P ++ R     AR   +P    RRR  P P  + +     P  + R P  
Sbjct: 296 THEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHRSPTPPARQRRSPSP 355

Query: 217 AATCTMSPLPSRRSRHTCAPCATPPSAASRSCAATS*PATTPSPWSRARR---PCVPRWR 387
            A    SP P+RR R       +PP+   RS +  +    +PSP  R  R   P   R R
Sbjct: 356 PARRHRSPPPARRRRSP-----SPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNR 410

Query: 388 PTAATPTRARTSS*SSLASPLWR-RWPS---WPT*TCPSKLPTP 507
             +    R R+ S     SP+ R R P+    P+ +   +LP+P
Sbjct: 411 SRSPLAKRGRSDSPGRSPSPVARLRDPTGARLPSPSIEQRLPSP 454



EST assemble image


clone accession position
1 HC070c09_r AV637219 1 443
2 LC013e08_r AV619812 1 458
3 LC048h10_r AV622381 5 494
4 MX005d03_r BP086267 5 411
5 MXL014h12_r BP093870 10 307
6 MX222f05_r BP090349 17 311
7 HC039e10_r AV634910 17 512
8 HC035g10_r AV634630 17 497
9 HC059a09_r AV636404 23 126
10 MX233g03_r BP091097 29 503
11 LC092e03_r AV625432 116 617




Chlamydomonas reinhardtii
Kazusa DNA Research Institute