KCC001964A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001964A_C01 KCC001964A_c01
cgggcgaaggccttctacagcgacatgtcgcttggccacgataggcggtgccaggctcat
atagaggtttaaaattgcatTTCGCTGAGACGCTTTCCCTAGTTGGGTCTCCTGATCTGA
TTTGGTGAAGAACCCAAAAGATGTCTGCAGAAGCAGCATGGCTGAGCGAGGCCATTGTGG
AGTTCTTGAAGGGGCCCATGTATATCAACCCGTTGATGGGCTTCATCGATGAGAAGTGCT
TGATATTCACGCCAGAGGAGGAGAACAAGTTCGAGTACACAATCTACCACAACGAGTTCA
AGGAGCTGGTGGACGGGCTGCTGACGGAGTTCCTGGAGGACCTGGGCGTGGGCGCGGAGC
AGTTCTACCAGGTGGTGGCCAAGGCGCAGGGCTCGGACCAGCTCACCAGCTTAGTGGTGC
AGACCATCCTGACGGTTGATGACTTCCTTATGTATAAGGCCATGATGGTGCGCCGCAACA
TCGACCTCACAAACCAGGTCCTGGAGGCGGTGGAGGAGGCGCGGCGGCTGGAGGCCAATG
GCTGGCGGCTGTGCTGTCCAAGCCCGAGGCCAGCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001964A_C01 KCC001964A_c01
         (576 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAH56056.1| Unknown (protein for MGC:69019) [Xenopus laevis]       113  2e-24
gb|AAH05731.1| RIKEN cDNA 4931428D14 [Mus musculus]                   106  3e-22
ref|XP_126017.1| RIKEN cDNA 4931428D14 [Mus musculus] gi|3035200...   106  3e-22
dbj|BAB26962.1| unnamed protein product [Mus musculus]                106  3e-22
ref|XP_214120.2| similar to hypothetical protein MGC15407 [Rattu...   106  3e-22

>gb|AAH56056.1| Unknown (protein for MGC:69019) [Xenopus laevis]
          Length = 338

 Score =  113 bits (283), Expect = 2e-24
 Identities = 49/126 (38%), Positives = 84/126 (65%)
 Frame = +3

Query: 141 MSAEAAWLSEAIVEFLKGPMYINPLMGFIDEKCLIFTPEEENKFEYTIYHNEFKELVDGL 320
           M+++A W+ E+++ F+ GP++  P++ F++ KC +F  +EENK  YT  HNE+KELV+ L
Sbjct: 1   MASDAEWVLESVLGFVSGPVWTVPVLEFMEHKCSVFDDDEENKLSYTDIHNEYKELVETL 60

Query: 321 LTEFLEDLGVGAEQFYQVVAKAQGSDQLTSLVVQTILTVDDFLMYKAMMVRRNIDLTNQV 500
           LT+ L ++G+  EQF +  A           ++Q +L V+DF ++KAMMV++NI+L  Q 
Sbjct: 61  LTQHLNEVGISEEQFQEACAAPLAHSATLKNILQPVLAVEDFKIFKAMMVQKNIELQLQA 120

Query: 501 LEAVEE 518
           +  ++E
Sbjct: 121 IRIIQE 126

>gb|AAH05731.1| RIKEN cDNA 4931428D14 [Mus musculus]
          Length = 343

 Score =  106 bits (264), Expect = 3e-22
 Identities = 44/123 (35%), Positives = 79/123 (63%)
 Frame = +3

Query: 150 EAAWLSEAIVEFLKGPMYINPLMGFIDEKCLIFTPEEENKFEYTIYHNEFKELVDGLLTE 329
           E  W+ E+I  FL+GP +  P++ F+++KC +F  EEE+K  YT  H E+KELV+ LL  
Sbjct: 8   EVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLES 67

Query: 330 FLEDLGVGAEQFYQVVAKAQGSDQLTSLVVQTILTVDDFLMYKAMMVRRNIDLTNQVLEA 509
           +L+++G+  +QF +         + +  ++Q +L  +DF ++KAMMV++NI++  Q +  
Sbjct: 68  YLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRI 127

Query: 510 VEE 518
           ++E
Sbjct: 128 IQE 130

>ref|XP_126017.1| RIKEN cDNA 4931428D14 [Mus musculus] gi|30352008|ref|NP_080016.1|
           RIKEN cDNA 4931428D14 [Mus musculus]
           gi|26344720|dbj|BAC36009.1| unnamed protein product [Mus
           musculus]
          Length = 343

 Score =  106 bits (264), Expect = 3e-22
 Identities = 44/123 (35%), Positives = 79/123 (63%)
 Frame = +3

Query: 150 EAAWLSEAIVEFLKGPMYINPLMGFIDEKCLIFTPEEENKFEYTIYHNEFKELVDGLLTE 329
           E  W+ E+I  FL+GP +  P++ F+++KC +F  EEE+K  YT  H E+KELV+ LL  
Sbjct: 8   EVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLES 67

Query: 330 FLEDLGVGAEQFYQVVAKAQGSDQLTSLVVQTILTVDDFLMYKAMMVRRNIDLTNQVLEA 509
           +L+++G+  +QF +         + +  ++Q +L  +DF ++KAMMV++NI++  Q +  
Sbjct: 68  YLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRI 127

Query: 510 VEE 518
           ++E
Sbjct: 128 IQE 130

>dbj|BAB26962.1| unnamed protein product [Mus musculus]
          Length = 343

 Score =  106 bits (264), Expect = 3e-22
 Identities = 44/123 (35%), Positives = 79/123 (63%)
 Frame = +3

Query: 150 EAAWLSEAIVEFLKGPMYINPLMGFIDEKCLIFTPEEENKFEYTIYHNEFKELVDGLLTE 329
           E  W+ E+I  FL+GP +  P++ F+++KC +F  EEE+K  YT  H E+KELV+ LL  
Sbjct: 8   EVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLES 67

Query: 330 FLEDLGVGAEQFYQVVAKAQGSDQLTSLVVQTILTVDDFLMYKAMMVRRNIDLTNQVLEA 509
           +L+++G+  +QF +         + +  ++Q +L  +DF ++KAMMV++NI++  Q +  
Sbjct: 68  YLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRI 127

Query: 510 VEE 518
           ++E
Sbjct: 128 IQE 130

>ref|XP_214120.2| similar to hypothetical protein MGC15407 [Rattus norvegicus]
          Length = 343

 Score =  106 bits (264), Expect = 3e-22
 Identities = 44/123 (35%), Positives = 79/123 (63%)
 Frame = +3

Query: 150 EAAWLSEAIVEFLKGPMYINPLMGFIDEKCLIFTPEEENKFEYTIYHNEFKELVDGLLTE 329
           E  W+ E+I  FL+GP +  P++ F+++KC +F  EEE+K  YT  H E+KELV+ LL  
Sbjct: 8   EVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLES 67

Query: 330 FLEDLGVGAEQFYQVVAKAQGSDQLTSLVVQTILTVDDFLMYKAMMVRRNIDLTNQVLEA 509
           +L+++G+  +QF +         + +  ++Q +L  +DF ++KAMMV++NI++  Q +  
Sbjct: 68  YLKEIGINEDQFQEACTSPLAKTRTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRI 127

Query: 510 VEE 518
           ++E
Sbjct: 128 IQE 130



EST assemble image


clone accession position
1 LC044c01_r AV622137 1 477
2 HC035e04_r AV634605 259 576




Chlamydomonas reinhardtii
Kazusa DNA Research Institute