KCC001955A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001955A_C01 KCC001955A_c01
ctccttCAACTCCTTAACAATAGAGGCCGGCTTCAACACACCGTCGCGAGGGACCGGAGT
TGCGCTCGACATGCACCGGAGTGGCTCGGCGTGTGGACTGCTGGCAATATGGCCTCGGCT
GGTCGCTTTGGACAACGGGTGACCCGTCATGGAGATGTTCCAGGATTGACAGCCGTTGGA
CAGCCTGACTGGCGGACCCACCGCACCCGGGGCCACGCCGGAATGCACTTGATGGCTGCG
GGAGTATTCCTGCTGGTTGCTGAGCTCCGCTGCGGATGCCTTTGGCCCCTGTGCTGTGGG
CCATAGTGGCATGTGTTCAGCAGAATCAAGTTGTCTCAAGCAGTCATGCCTGAGGCGCCA
GTTGCTCTGGACGTGGCGGGGCAGCCTCAGGCGCAGGTGCCAGAAAGCGGCGCTGCTCAA
CAGCAAGCCCACGCACCAGCCCAAATGCCGGACATCGAGGCGGCAGTCGTGGGCGCAGAC
GTCGTAGTGAAGGAGGACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001955A_C01 KCC001955A_c01
         (499 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD41523.1| OSJNBb0020O11.8 [Oryza sativa (japonica cultivar...    36  0.041
ref|NP_075157.1| p6.9 [Heliocoverpa armigera nucleopolyhedroviru...    36  0.23
sp|Q63003|5E5_RAT 5E5 ANTIGEN gi|1085558|pir||JC4163 DNA-binding...    35  0.51
ref|NP_110429.1| C/EBP-induced protein [Homo sapiens] gi|1269833...    35  0.66
ref|XP_329722.1| hypothetical protein [Neurospora crassa] gi|289...    35  0.66

>emb|CAD41523.1| OSJNBb0020O11.8 [Oryza sativa (japonica cultivar-group)]
          Length = 377

 Score = 35.8 bits (81), Expect(2) = 0.041
 Identities = 21/43 (48%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
 Frame = +3

Query: 369 GRGGAASGAGARK-RRCSTASPRTSPNAGHRGGSRGRRRRSEG 494
           GR G A+G G R+ R CS   PR   N G RG  RG R R  G
Sbjct: 325 GRTGEAAGGGRRQSRHCSRVGPRRQENEG-RGTHRGLRTRKTG 366

 Score = 21.9 bits (45), Expect(2) = 0.041
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 163 GLTAVGQPDWRTHRTRGHAGMHLMAAGVFLL 255
           G++AVG    R HR +  A +     G FL+
Sbjct: 263 GVSAVGNKGSRVHRDKNGAEIQREFVGGFLV 293

>ref|NP_075157.1| p6.9 [Heliocoverpa armigera nucleopolyhedrovirus G4]
           gi|15426346|ref|NP_203643.1| unknown [Helicoverpa
           armigera nuclear polyhedrosis virus]
           gi|18138279|ref|NP_542714.1| ORF91 [Helicoverpa zea
           single nucleocapsid nucleopolyhedrovirus]
           gi|11095608|gb|AAG29934.1|AF197913_2 basic DNA-binding
           protein BDBP [Helicoverpa armigera nuclear polyhedrosis
           virus] gi|12483839|gb|AAG53831.1|AF271059_88 p6.9
           [Heliocoverpa armigera nucleopolyhedrovirus G4]
           gi|15384422|gb|AAK96333.1|AF303045_75 unknown
           [Helicoverpa armigera nuclear polyhedrosis virus]
           gi|18028661|gb|AAL56097.1|AF334030_22 ORF91 [Helicoverpa
           zea single nucleocapsid nucleopolyhedrovirus]
          Length = 109

 Score = 36.2 bits (82), Expect = 0.23
 Identities = 26/62 (41%), Positives = 28/62 (44%), Gaps = 8/62 (12%)
 Frame = +3

Query: 336 SSSHA*GASCSGRGGAASGAGARKRRCSTASPRTSPNAGHRGGSR--------GRRRRSE 491
           SS    G   SG GG    +G R R  S    R+S   G RGG R        GRRRRS 
Sbjct: 12  SSGSGGGRRRSGGGGGRRRSGGR-RSSSGGRRRSSSGGGRRGGGRRRSGGGGGGRRRRSS 70

Query: 492 GG 497
           GG
Sbjct: 71  GG 72

 Score = 33.1 bits (74), Expect = 1.9
 Identities = 21/53 (39%), Positives = 24/53 (44%)
 Frame = +3

Query: 339 SSHA*GASCSGRGGAASGAGARKRRCSTASPRTSPNAGHRGGSRGRRRRSEGG 497
           SS   G    GR  +  G G R+RR S    R+      R G  G RRRS GG
Sbjct: 44  SSSGGGRRGGGRRRSGGGGGGRRRRSSGGRRRSGGGGRRRSG--GGRRRSSGG 94

>sp|Q63003|5E5_RAT 5E5 ANTIGEN gi|1085558|pir||JC4163 DNA-binding protein 5E5 - rat
           gi|531261|dbj|BAA07153.1| 5E5 antigen [Rattus
           norvegicus] gi|1581020|prf||2116328A DNA-binding protein
           5E5
          Length = 825

 Score = 35.0 bits (79), Expect = 0.51
 Identities = 20/43 (46%), Positives = 21/43 (48%)
 Frame = +3

Query: 369 GRGGAASGAGARKRRCSTASPRTSPNAGHRGGSRGRRRRSEGG 497
           G G AA+  G R RR S    R    AG  GG RG R R  GG
Sbjct: 554 GPGPAAATLGGRGRRGSWRGGRRGGGAGASGGGRGGRGRGRGG 596

>ref|NP_110429.1| C/EBP-induced protein [Homo sapiens]
           gi|12698332|gb|AAK01477.1|AF123073_1 C/EBP-induced
           protein [Homo sapiens] gi|22902371|gb|AAH37572.1|
           C/EBP-induced protein [Homo sapiens]
          Length = 453

 Score = 34.7 bits (78), Expect = 0.66
 Identities = 18/38 (47%), Positives = 21/38 (54%), Gaps = 5/38 (13%)
 Frame = +3

Query: 354 GASCSGRGGAA-----SGAGARKRRCSTASPRTSPNAG 452
           GA+  GRGG A      GAG  +R CS  +P  SP AG
Sbjct: 3   GAAAGGRGGGAWGPGRGGAGGLRRGCSPPAPAGSPRAG 40

>ref|XP_329722.1| hypothetical protein [Neurospora crassa] gi|28925790|gb|EAA34794.1|
            hypothetical protein [Neurospora crassa]
          Length = 2330

 Score = 34.7 bits (78), Expect = 0.66
 Identities = 25/60 (41%), Positives = 29/60 (47%), Gaps = 12/60 (20%)
 Frame = +3

Query: 354  GASCSGRGGA---------ASGAGA---RKRRCSTASPRTSPNAGHRGGSRGRRRRSEGG 497
            G+S +G GGA         ASG+GA   RKR  STA   T+   G   GSRG      GG
Sbjct: 2243 GSSAAGGGGAGGGGVTKRKASGSGAKTARKRGASTAPKTTTRGGGSGAGSRGGGAGGAGG 2302



EST assemble image


clone accession position
1 HCL001b10_r AV639572 1 270
2 HC033h05_r AV634476 7 499




Chlamydomonas reinhardtii
Kazusa DNA Research Institute