KCC001953A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001953A_C01 KCC001953A_c01
ccacgttctaaacattatttcatacatcgcactggtaacacagtcggcaggctgagatct
actcacgcgtaacaaccggtTTTGCAAAATGCGCGGAGGTTGCGCGCTAGTAGCGCTTTG
CATAGTCCTGGCACCACATGCCTTCGCACAACCAACTGATGCCATTGACGCATTATTTGC
CTGGGTTCGTCAGCTTGGCGGGACGATCAATGCGGAGGTGAAGGTAAACAAGGATGGCTT
CCGAGGCCTCTTTGCGAGTCAGGACATCCCTGAGAATGGCACCATCGCAAGTATCCCTGC
TGCGGCCATCATGAACGTTGGCGGCCTGAACGAAAGTTTTGCGGTGCCCACGCTCATGGT
GCTGCGTGAGTTCAAGGACCCCAACACCCGCTTCGCTCCGTACACGGCCATGTGGCCGGC
GCCGGACGGTCTGGTGAACTCGTGCAACATGCATGAGAAGTACATTAAGATGTGGAAGAG
CGAGTACTGGGAGCGCAACCAGCGCGACTGGCAATACCACCTGGAGTCGCTGCACAAGGG
CACCCTCAACCCGGACATTGAGTACACCATTGCGGAGGTGGTGGGCAACACGCCCGTCAG
CATTGAAGACCTCCAGTACGCCTGCGCCATTTCGTCCACACGCTATGTGTCCACGTCGCG
GCGGCAGCGGCTGCTCATGGCGCCGATCTTCGACCTGGCCAACCACGACCGCGACTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001953A_C01 KCC001953A_c01
         (718 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    43  0.004
ref|ZP_00059343.1| COG4760: Predicted membrane protein [Thermobi...    43  0.006
ref|NP_079136.1| hypothetical protein FLJ21148 [Homo sapiens] gi...    43  0.006
ref|ZP_00007936.1| COG0464: ATPases of the AAA+ class [Rhodobact...    42  0.007
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|...    42  0.010

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
           gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
           melanogaster]
          Length = 1225

 Score = 43.1 bits (100), Expect = 0.004
 Identities = 39/134 (29%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
 Frame = +3

Query: 330 TKVLRCPRSWCCVSSRTPTPASLRTRPCGRRRTVW*TRATCMRSTLRCGRA-----STGS 494
           T   RC  +    +  T TP S  T    R  T   T   C  +T  C        ST +
Sbjct: 269 TTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTT---TTPRCTTTTSTCSPTRTTPRSTTT 325

Query: 495 ATSATGNTTWSRCTRAPSTRTLSTPLRRWWATRPSALKTSSTPAPFRPHAMCPRRGGSGC 674
            +++   TT  RCT  PST    T  RR   T P +  T+ T     P    PR   + C
Sbjct: 326 TSTSRPTTTTPRCTTTPST----TCTRRPTTTTPRSTTTTCTSG---PTTTTPRSTTTTC 378

Query: 675 SWRRSSTWPTTTAT 716
           +   ++T P +T T
Sbjct: 379 TSGPTTTTPRSTTT 392

 Score = 40.4 bits (93), Expect = 0.028
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
 Frame = +3

Query: 348  PRSWCCVSSRTPTPASLR--TRPCGRRRTVW*TRATCMRSTLR----CGRASTGSATSAT 509
            PRS    ++  PT  + R  T P   R T    R+T   ST R      R++T ++T A 
Sbjct: 963  PRSTTTTTTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAP 1022

Query: 510  GNTTWSRCTRAPSTRTLSTPLRRWWAT---RPSAL--KTSSTPAPFRPHAMCPRRGGSGC 674
              TT    T   ++R  +T  R    T   RP+    ++++TP   RP    PR   +  
Sbjct: 1023 TTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCTSRPTTTTPRSTTTTT 1082

Query: 675  SWRRSSTWPTTTAT 716
            + R ++T P +T T
Sbjct: 1083 TSRPTTTTPRSTTT 1096

 Score = 40.0 bits (92), Expect = 0.036
 Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
 Frame = +3

Query: 348 PRSWCCVSSRTPTPA----SLRTRPCGRRRTVW*TRATCMRSTLRCGRASTGSATSATGN 515
           P S C   + TPTP       +T PC   +T    R+T   ST R    +  S T+ T +
Sbjct: 190 PTSPCTQETTTPTPTCSTQGTQTTPCTCAQTTTTPRSTTTTSTSRPTTTTPRSTTTTTTS 249

Query: 516 -------------------TTWSRCTRAPSTRTLSTPLRRWWATRPSALKTSSTPAPFRP 638
                              TT  RCT   ST   +T   R   T  ++  T++TP     
Sbjct: 250 RPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTT 309

Query: 639 HAMC-PRRGGSGCSWRRSSTWPTTT 710
            + C P R     +   S++ PTTT
Sbjct: 310 TSTCSPTRTTPRSTTTTSTSRPTTT 334

 Score = 37.7 bits (86), Expect = 0.18
 Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 10/139 (7%)
 Frame = +3

Query: 330  TKVLRCPRSWCCVSSRTPTPASL-RTRPCGRRRTVW*TRATCMRSTLRCGRASTGSATSA 506
            T   R   + C     T TP S  +T  C    T    R+T   ST R    +  S T+ 
Sbjct: 912  TTTPRSTTTTCTSGPTTTTPRSTTKTSTCAPTTTT--PRSTTTTSTSRPTTTTPRSTTTT 969

Query: 507  TGN---TTWSRCTRAPSTRTLSTPLRRWWATRPSALKTSSTPAPFRPHAMC------PRR 659
            T +   TT  R T  PST   +T   R   T  ++  T++TP      + C      PR 
Sbjct: 970  TTSRPTTTTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTSTCAPTTTTPRS 1029

Query: 660  GGSGCSWRRSSTWPTTTAT 716
              +  + R ++T P +T T
Sbjct: 1030 TTTTTTSRPTTTTPRSTTT 1048

>ref|ZP_00059343.1| COG4760: Predicted membrane protein [Thermobifida fusca]
          Length = 561

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 29/84 (34%), Positives = 33/84 (38%), Gaps = 2/84 (2%)
 Frame = -3

Query: 602 C*RACC--PPPPQWCTQCPG*GCPCAATPGGIASRAGCAPSTRSSTS*CTSHACCTSSPD 429
           C R  C  P P      CPG GC CA  P     R   A   + +   C   A C SS  
Sbjct: 53  CSRPTCGAPKPTAGTWPCPGRGCACAKAPTTSLLRWPTATGPKWTAPMC---AACASSWT 109

Query: 428 RPAPATWPCTERSGCWGP*THAAP 357
            PA   WP T R+ C  P +   P
Sbjct: 110 APAIPWWPPTTRASCGLPRSSQGP 133

>ref|NP_079136.1| hypothetical protein FLJ21148 [Homo sapiens]
           gi|10437194|dbj|BAB15011.1| unnamed protein product
           [Homo sapiens]
          Length = 449

 Score = 42.7 bits (99), Expect = 0.006
 Identities = 29/105 (27%), Positives = 53/105 (49%), Gaps = 18/105 (17%)
 Frame = +2

Query: 158 DAIDALFAWVRQLGGTINAEVKVNKDGF---RGLFASQDIPENGTIASIPAAAIMN---- 316
           D +    +W R++G  ++ +V V++ G     G+ A + +     +  +P AA+++    
Sbjct: 20  DPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTC 79

Query: 317 -VGGLNE---------SFAVPTLM-VLREFKDPNTRFAPYTAMWP 418
            +GGL E         S  VP L+ +L E + P +R+ PY A+WP
Sbjct: 80  SIGGLLERERVALQGQSGWVPLLLALLHELQAPASRWRPYFALWP 124

>ref|ZP_00007936.1| COG0464: ATPases of the AAA+ class [Rhodobacter sphaeroides]
          Length = 589

 Score = 42.4 bits (98), Expect = 0.007
 Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
 Frame = +3

Query: 357 WCCVSSRTPTPASLRTRPCGRRRTVW*TRATCMRST---LRCGRASTGSATSATGNTTWS 527
           WCC S+  P+     +RP GR RT W  +  C R+T       RA   SA    G + W 
Sbjct: 2   WCCSSAAAPSATRWGSRP-GRPRTAWRWKRWCWRATRAATSMWRARRSSAPRPNGASRW- 59

Query: 528 RCTRAPSTRTLSTPLRRWWATRPSALKTSSTPAPFRPHAMCPRRG 662
              R PS    ++P      T P   +TS  P    P + C   G
Sbjct: 60  ---RPPSIPGATSPS----TTPPPTRRTSCRP----PRSRCKETG 93

>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
           gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
           sapiens]
          Length = 580

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 45/141 (31%), Positives = 60/141 (41%), Gaps = 8/141 (5%)
 Frame = +3

Query: 228 TRMASEASLRV--RTSLRMAPSQVSLLRPS*TLAA*TKVLRCPRSWCCVSSRTPTPASL- 398
           T+M S A LR   R SL   P++ SL+R   T    +   + PR+    S RTP+ AS  
Sbjct: 53  TKMESTALLRTLPRASLMRTPTRASLMR---TPPRASPTRKPPRA----SPRTPSRASPT 105

Query: 399 ----RTRPCGRRRTVW*TRATCMRSTLRCGRASTGSATSATGNTTWSRCTRAPSTRT-LS 563
               R  P G        RA+ MR+  R     T S  S TG  + +  T  P   +   
Sbjct: 106 RRLPRASPMGSPH-----RASPMRTPPRASPTGTPSTASPTGTPSSASPTGTPPRASPTG 160

Query: 564 TPLRRWWATRPSALKTSSTPA 626
           TP R W    PS    + TP+
Sbjct: 161 TPPRAWATRSPSTASLTRTPS 181

 Score = 35.8 bits (81), Expect = 0.68
 Identities = 45/137 (32%), Positives = 58/137 (41%), Gaps = 5/137 (3%)
 Frame = +3

Query: 228 TRMASEASL---RVRTSLRMAPSQVSLLRPS*TLAA*TKVLRCPRSWCCVSSRTPTPASL 398
           TR  S ASL   +  +SL   PS  SL R     A+ T+    PR+     +RTP  ASL
Sbjct: 407 TRTPSRASLTRTQSSSSLTRTPSMASLTRTP-PRASLTRTP--PRASL---TRTPPRASL 460

Query: 399 RTRPCGRRRTVW*TRATCMRSTLRCGRASTGSATSATGNTTWSRCTRAPSTRTL--STPL 572
              P     T   +  +  RS  R     T S  S T   + +  TR PST +L  + P 
Sbjct: 461 TRTPPRASLTRTPSMVSLKRSPSRASLTRTPSRASLTMTPSRASLTRTPSTASLTGTPPT 520

Query: 573 RRWWATRPSALKTSSTP 623
                T P+A  T S P
Sbjct: 521 ASLTRTPPTASLTRSPP 537

 Score = 33.5 bits (75), Expect = 3.4
 Identities = 44/149 (29%), Positives = 59/149 (39%), Gaps = 7/149 (4%)
 Frame = +3

Query: 228 TRMASEASLR---VRTSLRMAPSQVSLLR--PS*TLAA*TKVLRCPRSWCCVS-SRTPTP 389
           TR  S ASL     R SL   P + SL R  P  +L          R+   VS  R+P+ 
Sbjct: 425 TRTPSMASLTRTPPRASLTRTPPRASLTRTPPRASLTRTPPRASLTRTPSMVSLKRSPSR 484

Query: 390 ASLRTRPCGRRRTVW*TRATCMRSTLRCGRASTGSATSATGNTTWSRCTRAPSTRTLS-T 566
           ASL   P     T+  +RA+  R+        T    S T     +  TR+P T +L+ T
Sbjct: 485 ASLTRTPSRASLTMTPSRASLTRTPSTASLTGTPPTASLTRTPPTASLTRSPPTASLTRT 544

Query: 567 PLRRWWATRPSALKTSSTPAPFRPHAMCP 653
           P        PS   T+S       +  CP
Sbjct: 545 PSTASLTRMPS---TASLTRKSNVNQQCP 570

 Score = 32.3 bits (72), Expect = 7.6
 Identities = 43/151 (28%), Positives = 56/151 (36%), Gaps = 30/151 (19%)
 Frame = +3

Query: 348 PRSWCCVSSRTPTPASLRTRPCGRRRTVW*TRATCMRS--------TLRCGRASTGSATS 503
           PR+W   ++R+P+ ASL   P     T W  RA+  R+        + R     T    S
Sbjct: 163 PRAW---ATRSPSTASLTRTPSRASLTRWPPRASPTRTPPRESPRMSHRASPTRTPPRAS 219

Query: 504 ATGNTTWSRCTRAPSTRTLSTPLR--------RWWATR--PSALKTSSTP---------- 623
            T     +  TR P   +L T  R        R   TR  P A  T S P          
Sbjct: 220 PTRRPPRASPTRTPPRESLRTSHRASPTRMPPRASPTRRPPRASPTGSPPRASPMTPPRA 279

Query: 624 APFRPHAMCPRRGGSGCSWRRSSTW--PTTT 710
           +P  P    P    S  S  R+ +W  PTTT
Sbjct: 280 SPRTPPRASPTTTPSRASLTRTPSWASPTTT 310

 Score = 32.0 bits (71), Expect = 9.9
 Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
 Frame = +3

Query: 378 TPTPASLRTRPCGRRRTVW*TRATCM---------RSTLRCGRASTGSATSATGNTTWSR 530
           TP+ ASL   P     T   +RA+ M         R+  R     T S  S TG  + + 
Sbjct: 292 TPSRASLTRTPSWASPTTTPSRASLMKMESTVSITRTPPRASPTGTPSRASPTGTPSRAS 351

Query: 531 CTRAPSTRTLS-TPLRRWWATRPSALKTSSTPAPFRPHAMCPRRGGSGCSWRRSST 695
            T +PS  +L+ TP R      PS      TP+        PR   +G S   S T
Sbjct: 352 LTGSPSRASLTGTPSRASLIGTPSRASLIGTPSRASLTGTPPRASLTGTSSTASLT 407



EST assemble image


clone accession position
1 LCL056a08_r AV629294 1 509
2 MX214g09_r BP089843 167 563
3 HC033h02_r AV634473 457 718




Chlamydomonas reinhardtii
Kazusa DNA Research Institute