>KCC001947A_C01 KCC001947A_c01
caatacttactggatTGCATGCATGCTGGTCACTGTAATAGCGACACCTAGAATATCAAT
CGGTATTCGCGTCCGCGACCGCAAGCTCGGCAGGCCTTGTTTACTCTGTCAGATTATCTG
AGTACACAACCAATCAAGCAGGTCAAATAATCCTCTAGAAACAGCTTTGCGCAGCGAGGC
TTGAAAACTCGCAACACCCGCTCGTCTAATGGGCGAAGGCGCGCTCGGGGTTCCGCCGCT
CCCCGTCACCGCGTCAAATGAGGAGCGGGAGGCACGGTACGAACTGGTGCTTGAGTCGGT
GAAGTCTGTCCTGGAAGGCGAGGACGACTGGGTGGCTGTCATGGCCACAGTGGCGTGTCT
GCTGCATGAGGCGTTCGAGTACTACCACTGGACGGGCTTCTACCAGGCCGGGCCCCCGGG
CGATGACACGCTGGTGATCGGGCCGTACCAGTGCCACATGGGCTGCCTGCGCATCCCGTA
CAGCAGGGGCGTGTGCGGCGCAGCGGCGCGCACCAAGACCTCTCAGCTGGTGCCGGACGT
G

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001947A_C01 KCC001947A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_421082.1| conserved hypothetical protein [Caulobacter cre...   100  2e-20
ref|ZP_00006518.1| COG1956: GAF domain-containing protein [Rhodo...    95  5e-19
ref|NP_834359.1| GAF domain-containing proteins [Bacillus cereus...    79  4e-14
ref|NP_658686.1| GAF, Domain present in phytochromes and cGMP-sp...    79  4e-14
ref|NP_274882.1| conserved hypothetical protein [Neisseria menin...    74  9e-13

>ref|NP_421082.1| conserved hypothetical protein [Caulobacter crescentus CB15]
           gi|25399782|pir||F87531 conserved hypothetical protein
           CC2279 [imported] - Caulobacter crescentus
           gi|13423794|gb|AAK24250.1| conserved hypothetical
           protein [Caulobacter crescentus CB15]
          Length = 231

 Score = 99.8 bits (247), Expect = 2e-20
 Identities = 48/93 (51%), Positives = 62/93 (66%)
 Frame = +2

Query: 263 EREARYELVLESVKSVLEGEDDWVAVMATVACLLHEAFEYYHWTGFYQAGPPGDDTLVIG 442
           ++  RY  V + + SVL+GE +  A MATVA +L  +F+ Y W GFY   P  +  LV+G
Sbjct: 80  DKATRYAEVADEIASVLDGEPNLTARMATVASMLANSFDSYFWAGFYVVDPTKERELVVG 139

Query: 443 PYQCHMGCLRIPYSRGVCGAAARTKTSQLVPDV 541
           PYQ  +GCLRI + RGVCGAAA T  +QLVPDV
Sbjct: 140 PYQGTLGCLRIAFGRGVCGAAAATGQTQLVPDV 172

>ref|ZP_00006518.1| COG1956: GAF domain-containing protein [Rhodobacter sphaeroides]
          Length = 150

 Score = 95.1 bits (235), Expect = 5e-19
 Identities = 48/88 (54%), Positives = 61/88 (68%)
 Frame = +2

Query: 278 YELVLESVKSVLEGEDDWVAVMATVACLLHEAFEYYHWTGFYQAGPPGDDTLVIGPYQCH 457
           Y+ + ++++++  GE D VA+MATVAC +H A     WTGFY+    G + L IGPYQ  
Sbjct: 3   YDQLDQTIEALCHGEQDTVALMATVACEIHHAHPLSDWTGFYRV--TGPELLKIGPYQGA 60

Query: 458 MGCLRIPYSRGVCGAAARTKTSQLVPDV 541
            GCL IP+SRGVCGAAART   QLVPDV
Sbjct: 61  HGCLVIPFSRGVCGAAARTGRIQLVPDV 88

>ref|NP_834359.1| GAF domain-containing proteins [Bacillus cereus ATCC 14579]
           gi|29898287|gb|AAP11560.1| GAF domain-containing
           proteins [Bacillus cereus ATCC 14579]
          Length = 159

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 39/92 (42%), Positives = 59/92 (63%)
 Frame = +2

Query: 266 REARYELVLESVKSVLEGEDDWVAVMATVACLLHEAFEYYHWTGFYQAGPPGDDTLVIGP 445
           R  +YE V++ + ++L GE + VA ++  + LL++  +  +W GFY       + LV+GP
Sbjct: 11  RVQQYETVIKQLDALLTGESNVVANLSNASALLNQFLDRVNWVGFYVTE---GNQLVLGP 67

Query: 446 YQCHMGCLRIPYSRGVCGAAARTKTSQLVPDV 541
           +Q    C+RIP+ RGVCG AA TKT+QLV DV
Sbjct: 68  FQGMPACVRIPFGRGVCGVAAETKTTQLVADV 99

>ref|NP_658686.1| GAF, Domain present in phytochromes and cGMP-specific
           phosphodiesterases [Bacillus anthracis A2012]
           gi|30264726|ref|NP_847103.1| conserved hypothetical
           protein [Bacillus anthracis str. Ames]
           gi|30259401|gb|AAP28589.1| conserved hypothetical
           protein [Bacillus anthracis str. Ames]
          Length = 159

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 39/92 (42%), Positives = 59/92 (63%)
 Frame = +2

Query: 266 REARYELVLESVKSVLEGEDDWVAVMATVACLLHEAFEYYHWTGFYQAGPPGDDTLVIGP 445
           R  +YE V++ + ++L GE + VA ++  + LL++  +  +W GFY       + LV+GP
Sbjct: 11  RVQQYETVIKQLDALLTGESNIVANLSNASALLNQFLDRVNWVGFYVTE---GNQLVLGP 67

Query: 446 YQCHMGCLRIPYSRGVCGAAARTKTSQLVPDV 541
           +Q    C+RIP+ RGVCG AA TKT+QLV DV
Sbjct: 68  FQGMPACVRIPFGRGVCGVAAETKTTQLVADV 99

>ref|NP_274882.1| conserved hypothetical protein [Neisseria meningitidis MC58]
           gi|11279818|pir||D81031 conserved hypothetical protein
           NMB1886 [imported] - Neisseria meningitidis (strain MC58
           serogroup B) gi|7227145|gb|AAF42220.1| conserved
           hypothetical protein [Neisseria meningitidis MC58]
          Length = 167

 Score = 74.3 bits (181), Expect = 9e-13
 Identities = 40/96 (41%), Positives = 56/96 (57%)
 Frame = +2

Query: 254 SNEEREARYELVLESVKSVLEGEDDWVAVMATVACLLHEAFEYYHWTGFYQAGPPGDDTL 433
           S  ++ A Y  VL  ++SV+  E DWVA +A  A +L EAF ++ W GFY      D+ L
Sbjct: 7   SASDKAALYREVLPQIESVVADEADWVANLANTAAVLKEAFGWF-WVGFYLVDTRSDE-L 64

Query: 434 VIGPYQCHMGCLRIPYSRGVCGAAARTKTSQLVPDV 541
           V+ P+Q  + C RIP+ RGVCG A     + +V DV
Sbjct: 65  VLAPFQGPLACTRIPFGRGVCGQAWAKGETVVVKDV 100

EST assemble image

clone accession position 1 LC081d02_r AV624696 1 510 2 HC031f08_r AV634302 16 542

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