KCC001945A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001945A_C01 KCC001945A_c01
ctgacttcaaggagaagggcgtgcagatggtggacacaacctgcccctgggtggctaagg
tgtggaacagcgtggacacgCACACCCGCAAGCAGTACACGTCTGTCATCCACGGCAAGT
ACTCGCACGAGGAGACAATCGCCACCGCGTCCTTCGCCTCCAACTACATCATCGTCAAGG
ACCTCAAGGAGGCGCAGTACGTCTGCGACTACATCCTGCAGGGCGGCAACCGCGAGGAGT
TCCTGCAGAAGTTCTCAAAGGCGGTCTCGGCCGGGTTTGATCCGGAGACCATGCTGGACC
GCGTCGGTCTGGCCAACCAGACCACCATGCTCAAGGGCGAGACTGAGCAGATTGGCAAGA
TGCTGGAGAAGACCATGCTGACCAAGTACGGCCCCGCCAAGCTCAACGACCACTTCCTGC
TCATGGAGACCATCTGCGACGCCACGCAGGAGCGCCAGGACGCGCTCTACGAGATGGTCG
CCGACCCCGAGATCGACATGATGATCGTGGTCGGCGGCTTCAACAGCTCCAACACCAGCC
ACCTGCAGGAGATCGCCGAGCACAAGGGCCTGGCCTCGTTCTGGGTCGACTCGGCGGCGC
GCATTGACGTCGAGAAGAATGTTATCCTGCACAAGCTGGCGCACGGCGAGCTGAAGGAGA
CCACCGGCTGGCTCAACCCCGGCAAGCCCGTCACCATCGGCATCACCAGCGGCGCCTCCA
CACCCGACCGCGCCGTGGAGGAGGTGCTGCACAAGGTGTTCAAGATCTACAACCCCAACT
TTGGTGGCGTTGCGCCCAAGGACTGCGGCCGCGTCGCCACCCCCGATGAGGAGCACTAAA
CTGCCGGCGTCTACAGCAGCGGCGGCGGCGGCTGGCGACGGCGGCGCAGGGGCAGTGTAC
GTCGTGGCATAGCGGCTGGTGCTGGGAGTAAGCAGCAGGGTTTCTGGAACGGTGGCTGCT
CGGGCTGCCGGCGCCGGTGCGGGCTGCTAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001945A_C01 KCC001945A_c01
         (991 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG21984.1|AF270978_1 LYTB-like protein precursor [Adonis pal...   333  4e-90
ref|NP_485028.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   327  2e-88
ref|NP_567965.1| ISPH [Arabidopsis thaliana] gi|14596179|gb|AAK6...   320  2e-86
ref|NP_681832.1| ORF_ID:tlr1041~penicillin tolerance protein Lyt...   320  3e-86
ref|NP_896347.1| LytB protein homolog [Synechococcus sp. WH 8102...   310  2e-83

>gb|AAG21984.1|AF270978_1 LYTB-like protein precursor [Adonis palaestina]
          Length = 464

 Score =  333 bits (853), Expect = 4e-90
 Identities = 165/258 (63%), Positives = 204/258 (78%), Gaps = 6/258 (2%)
 Frame = +3

Query: 12  EKGVQMVDTTCPWVAKVWNSVDTHTRKQYTSVIHGKYSHEETIATASFASNYIIVKDLKE 191
           EK VQ+VDTTCPWV+KVWNSV+ H + +YTS+IHGKYSHEETIATASFA  YIIVK++ E
Sbjct: 201 EKNVQIVDTTCPWVSKVWNSVEKHKKGEYTSIIHGKYSHEETIATASFAGKYIIVKNMDE 260

Query: 192 AQYVCDYILQG------GNREEFLQKFSKAVSAGFDPETMLDRVGLANQTTMLKGETEQI 353
           A YVCDYIL G       +++  L+KF  A+S GFDP+T L + G+ANQTTMLKGETE I
Sbjct: 261 AMYVCDYILGGELNGSSSDKQALLEKFKYAISEGFDPDTDLIKTGIANQTTMLKGETEDI 320

Query: 354 GKMLEKTMLTKYGPAKLNDHFLLMETICDATQERQDALYEMVADPEIDMMIVVGGFNSSN 533
           GK+LEKTM+ KYG   +NDHF+   TICDATQERQDA++++V + ++D+++VVGG+NSSN
Sbjct: 321 GKLLEKTMMRKYGVENINDHFISFNTICDATQERQDAMFKLV-EEKVDLILVVGGWNSSN 379

Query: 534 TSHLQEIAEHKGLASFWVDSAARIDVEKNVILHKLAHGELKETTGWLNPGKPVTIGITSG 713
           TSHLQEI+E +G+ S+W+DS  RI    N I HKL HGEL ET  WL P  PVTIG+TSG
Sbjct: 380 TSHLQEISELRGIPSYWIDSETRIG-PGNKISHKLNHGELVETENWL-PEGPVTIGVTSG 437

Query: 714 ASTPDRAVEEVLHKVFKI 767
           ASTPD+AVE+ L KVF I
Sbjct: 438 ASTPDKAVEDALVKVFDI 455

>ref|NP_485028.1| hypothetical protein [Nostoc sp. PCC 7120]
           gi|20138568|sp|P58674|ISPH_ANASP
           4-hydroxy-3-methylbut-2-enyl diphosphate reductase
           gi|25532849|pir||AF1929 hypothetical protein all0985
           [imported] - Nostoc sp. (strain PCC 7120)
           gi|17130331|dbj|BAB72942.1| ORF_ID:all0985~hypothetical
           protein [Nostoc sp. PCC 7120]
          Length = 402

 Score =  327 bits (838), Expect = 2e-88
 Identities = 159/252 (63%), Positives = 199/252 (78%)
 Frame = +3

Query: 12  EKGVQMVDTTCPWVAKVWNSVDTHTRKQYTSVIHGKYSHEETIATASFASNYIIVKDLKE 191
           EKG ++VDTTCPWV+KVWN+V+ H +  +TS+IHGKY HEETIAT+SFA  Y+IV +LKE
Sbjct: 147 EKGCKIVDTTCPWVSKVWNTVEKHKKGDHTSIIHGKYKHEETIATSSFAGKYLIVLNLKE 206

Query: 192 AQYVCDYILQGGNREEFLQKFSKAVSAGFDPETMLDRVGLANQTTMLKGETEQIGKMLEK 371
           AQYV DYIL GGNREEFLQKF+KA SAGFDP+  L+RVG+ANQTTMLKGETEQIGK+ E 
Sbjct: 207 AQYVADYILHGGNREEFLQKFAKACSAGFDPDRDLERVGIANQTTMLKGETEQIGKLFEH 266

Query: 372 TMLTKYGPAKLNDHFLLMETICDATQERQDALYEMVADPEIDMMIVVGGFNSSNTSHLQE 551
           TML KYGP +LN HF    TICDATQERQDA+ E+V +  +D+MIV+GGFNSSNT+ LQ+
Sbjct: 267 TMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQE-NLDLMIVIGGFNSSNTTQLQQ 325

Query: 552 IAEHKGLASFWVDSAARIDVEKNVILHKLAHGELKETTGWLNPGKPVTIGITSGASTPDR 731
           I++ +GL S+ +D   RI    N I H+  +GEL  T  WL  GK + +G+TSGASTPD+
Sbjct: 326 ISQERGLPSYHIDVVERIK-SINSIEHRQLNGELVTTENWLPAGK-IVVGVTSGASTPDK 383

Query: 732 AVEEVLHKVFKI 767
            VE+V+ K+F +
Sbjct: 384 VVEDVIEKIFAL 395

>ref|NP_567965.1| ISPH [Arabidopsis thaliana] gi|14596179|gb|AAK68817.1| putative
           protein [Arabidopsis thaliana]
           gi|20148251|gb|AAM10016.1| putative protein [Arabidopsis
           thaliana] gi|27368105|gb|AAN87171.1| ISPH [Arabidopsis
           thaliana]
          Length = 466

 Score =  320 bits (820), Expect = 2e-86
 Identities = 160/258 (62%), Positives = 202/258 (78%), Gaps = 6/258 (2%)
 Frame = +3

Query: 12  EKGVQMVDTTCPWVAKVWNSVDTHTRKQYTSVIHGKYSHEETIATASFASNYIIVKDLKE 191
           +K VQ+VDTTCPWV KVWN+V+ H + +YTSVIHGKY+HEETIATASFA  YIIVK++KE
Sbjct: 203 DKKVQIVDTTCPWVTKVWNTVEKHKKGEYTSVIHGKYNHEETIATASFAGKYIIVKNMKE 262

Query: 192 AQYVCDYILQG------GNREEFLQKFSKAVSAGFDPETMLDRVGLANQTTMLKGETEQI 353
           A YVCDYIL G        +EEF++KF  A+S GFDP+  L +VG+ANQTTMLKGETE+I
Sbjct: 263 ANYVCDYILGGQYDGSSSTKEEFMEKFKYAISKGFDPDNDLVKVGIANQTTMLKGETEEI 322

Query: 354 GKMLEKTMLTKYGPAKLNDHFLLMETICDATQERQDALYEMVADPEIDMMIVVGGFNSSN 533
           G++LE TM+ KYG   ++ HF+   TICDATQERQDA+YE+V + +ID+M+VVGG+NSSN
Sbjct: 323 GRLLETTMMRKYGVENVSGHFISFNTICDATQERQDAIYELV-EEKIDLMLVVGGWNSSN 381

Query: 534 TSHLQEIAEHKGLASFWVDSAARIDVEKNVILHKLAHGELKETTGWLNPGKPVTIGITSG 713
           TSHLQEI+E +G+ S+W+DS  RI    N I +KL +GEL E   +L P  P+TIG+TSG
Sbjct: 382 TSHLQEISEARGIPSYWIDSEKRIG-PGNKIAYKLHYGELVEKENFL-PKGPITIGVTSG 439

Query: 714 ASTPDRAVEEVLHKVFKI 767
           ASTPD+ VE+ L KVF I
Sbjct: 440 ASTPDKVVEDALVKVFDI 457

>ref|NP_681832.1| ORF_ID:tlr1041~penicillin tolerance protein LytB homolog
           [Thermosynechococcus elongatus BP-1]
           gi|22294765|dbj|BAC08594.1| ORF_ID:tlr1041~penicillin
           tolerance protein LytB homolog [Thermosynechococcus
           elongatus BP-1]
          Length = 402

 Score =  320 bits (819), Expect = 3e-86
 Identities = 155/252 (61%), Positives = 198/252 (78%)
 Frame = +3

Query: 12  EKGVQMVDTTCPWVAKVWNSVDTHTRKQYTSVIHGKYSHEETIATASFASNYIIVKDLKE 191
           E+G  +VDTTCPWV+KVW+SV+ H +  +TS+IHGKY+HEETIAT+SFA  Y+IV +L+E
Sbjct: 147 ERGCTIVDTTCPWVSKVWHSVEKHKKVSFTSIIHGKYNHEETIATSSFAGTYLIVLNLEE 206

Query: 192 AQYVCDYILQGGNREEFLQKFSKAVSAGFDPETMLDRVGLANQTTMLKGETEQIGKMLEK 371
           A+YVCDYIL GG+R  F+ KF+KA S GFDP+  L RVG+ANQTTMLKGETEQIGK+ E+
Sbjct: 207 ARYVCDYILHGGDRAAFMAKFAKACSPGFDPDRDLVRVGIANQTTMLKGETEQIGKLFER 266

Query: 372 TMLTKYGPAKLNDHFLLMETICDATQERQDALYEMVADPEIDMMIVVGGFNSSNTSHLQE 551
           TM+ KYGP +LN+HF+   TICDATQERQDA+  +V +P +D+M+V+GG+NSSNT+HLQE
Sbjct: 267 TMIQKYGPDRLNEHFMSFNTICDATQERQDAMLSLVKEP-LDLMVVIGGYNSSNTTHLQE 325

Query: 552 IAEHKGLASFWVDSAARIDVEKNVILHKLAHGELKETTGWLNPGKPVTIGITSGASTPDR 731
           IA   G+ S+ +DSA RI    N I HK  H        WL P +P+TIGITSGASTPD+
Sbjct: 326 IAIEHGIPSYHIDSADRIG-PGNRIEHKPLHQNPTVAENWL-PDRPITIGITSGASTPDK 383

Query: 732 AVEEVLHKVFKI 767
            VEEVL+K+F +
Sbjct: 384 VVEEVLNKIFAL 395

>ref|NP_896347.1| LytB protein homolog [Synechococcus sp. WH 8102]
           gi|33632311|emb|CAE06767.1| LytB protein homolog
           [Synechococcus sp. WH 8102]
          Length = 399

 Score =  310 bits (795), Expect = 2e-83
 Identities = 147/249 (59%), Positives = 196/249 (78%)
 Frame = +3

Query: 12  EKGVQMVDTTCPWVAKVWNSVDTHTRKQYTSVIHGKYSHEETIATASFASNYIIVKDLKE 191
           E+G  +VDTTCPWV+KVW +V+ H +   TS+IHGK  HEET+AT+SFA  Y++V D++E
Sbjct: 147 ERGCHIVDTTCPWVSKVWTTVEKHKKHTITSIIHGKVKHEETLATSSFAGTYLVVLDMEE 206

Query: 192 AQYVCDYILQGGNREEFLQKFSKAVSAGFDPETMLDRVGLANQTTMLKGETEQIGKMLEK 371
           AQ V DYIL  G+R+ F+Q+FS A S GFDP+  L R+G+ANQTTMLK ETE+IG++ E+
Sbjct: 207 AQIVADYILGKGDRDAFMQRFSAACSPGFDPDRDLSRLGVANQTTMLKSETEEIGRLFER 266

Query: 372 TMLTKYGPAKLNDHFLLMETICDATQERQDALYEMVADPEIDMMIVVGGFNSSNTSHLQE 551
           TML+KYGPA+LNDHF+   TICDATQERQDA++ +V +P +D+M+V+GGFNSSNT+HLQE
Sbjct: 267 TMLSKYGPAELNDHFVAFNTICDATQERQDAMFSLVDEP-LDLMVVIGGFNSSNTTHLQE 325

Query: 552 IAEHKGLASFWVDSAARIDVEKNVILHKLAHGELKETTGWLNPGKPVTIGITSGASTPDR 731
           IA  +G+ SF +D+  R+D + N I HK  +  L+  + +L P  PVT+GITSGASTPDR
Sbjct: 326 IALSRGIRSFHIDTPDRLDAQANAIEHKPLNENLRLESNFL-PAGPVTVGITSGASTPDR 384

Query: 732 AVEEVLHKV 758
           AVEEV+ K+
Sbjct: 385 AVEEVIEKL 393



EST assemble image


clone accession position
1 HC051g10_r AV635851 1 429
2 LC054b05_r AV622759 300 791
3 HC072d12_r AV637383 435 870
4 MX008h08_r BP086442 461 835
5 HC031c04_r AV634268 521 991




Chlamydomonas reinhardtii
Kazusa DNA Research Institute