Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001942A_C01 KCC001942A_c01
(565 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194645.1| expressed protein [Arabidopsis thaliana] gi|748... 94 1e-18
ref|NP_179573.1| copia-related retroelement pol polyprotein [Ara... 94 2e-18
gb|AAM66053.1| copia-like retroelement pol polyprotein [Arabidop... 92 4e-18
ref|NP_083638.1| RIKEN cDNA 2010012F05 [Mus musculus] gi|2463629... 75 5e-13
ref|NP_789782.1| Snf7 homologue associated with Alix 1 [Homo sap... 75 5e-13
>ref|NP_194645.1| expressed protein [Arabidopsis thaliana] gi|7485746|pir||T08971
hypothetical protein F19B15.190 - Arabidopsis thaliana
gi|4972062|emb|CAB43930.1| putative protein [Arabidopsis
thaliana] gi|7269814|emb|CAB79674.1| putative protein
[Arabidopsis thaliana] gi|14596131|gb|AAK68793.1|
putative protein [Arabidopsis thaliana]
gi|18377478|gb|AAL66905.1| putative protein [Arabidopsis
thaliana]
Length = 219
Score = 94.4 bits (233), Expect = 1e-18
Identities = 52/134 (38%), Positives = 80/134 (58%)
Frame = +1
Query: 163 MFKKLFGQKPGTASSVPATSANAANKTISAIQNLTEHEESLEKRKALLEKRMDAELERAK 342
M +LFG+ P ANA + + L E E LEK++ +L K+ AE+E+AK
Sbjct: 1 MMNRLFGK--------PKQEANA----LQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAK 48
Query: 343 EFTRQKKKPQALQCLKKKKLLENEIANLDNMIMRVNEQRMMLEGQRTTTEVVSSMHTAAL 522
E++R K K A+QCLK+K+L E ++ L N +R+++Q +MLEG + TTE V ++ + A
Sbjct: 49 EYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGAS 108
Query: 523 AAKDNMKAMKIENV 564
A K KA I++V
Sbjct: 109 AMKAMQKATNIDDV 122
>ref|NP_179573.1| copia-related retroelement pol polyprotein [Arabidopsis thaliana]
gi|25370522|pir||F84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana
gi|3687235|gb|AAC62133.1| copia-like retroelement pol
polyprotein [Arabidopsis thaliana]
gi|15028177|gb|AAK76585.1| putative copia retroelement
pol polyprotein [Arabidopsis thaliana]
gi|19310843|gb|AAL85152.1| putative copia retroelement
pol polyprotein [Arabidopsis thaliana]
Length = 213
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/108 (42%), Positives = 70/108 (64%)
Frame = +1
Query: 241 TISAIQNLTEHEESLEKRKALLEKRMDAELERAKEFTRQKKKPQALQCLKKKKLLENEIA 420
T+ + L E E LEK++ +L K+ E+E+AKEF+R K K A+QCLK+K+L E ++
Sbjct: 16 TLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVE 75
Query: 421 NLDNMIMRVNEQRMMLEGQRTTTEVVSSMHTAALAAKDNMKAMKIENV 564
L N +R+++Q +MLEG + TTE V ++ T A A K KA I++V
Sbjct: 76 QLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDV 123
>gb|AAM66053.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 218
Score = 92.4 bits (228), Expect = 4e-18
Identities = 48/118 (40%), Positives = 74/118 (62%)
Frame = +1
Query: 211 PATSANAANKTISAIQNLTEHEESLEKRKALLEKRMDAELERAKEFTRQKKKPQALQCLK 390
P ANA + + L E E LEK++ +L K+ AE+E+AKE++R K K A+QCLK
Sbjct: 8 PKQEANA----LQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLK 63
Query: 391 KKKLLENEIANLDNMIMRVNEQRMMLEGQRTTTEVVSSMHTAALAAKDNMKAMKIENV 564
+K+L E ++ L N +R+++Q +MLEG + TTE V ++ + A A K KA I++V
Sbjct: 64 RKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDV 121
>ref|NP_083638.1| RIKEN cDNA 2010012F05 [Mus musculus]
gi|24636295|sp|Q9D8B3|CTH8_MOUSE Protein c20orf178
homolog gi|15030308|gb|AAH11429.1| RIKEN cDNA 2010012F05
[Mus musculus] gi|37590690|gb|AAH59279.1| 2010012F05Rik
protein [Mus musculus]
Length = 224
Score = 75.5 bits (184), Expect = 5e-13
Identities = 51/139 (36%), Positives = 73/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 157 LKMFKKLFGQKPGTASSVPATSANAANKTISAIQNLTEHEESLEKRKALLEKRMDAELER 336
+ +F KLFG G A T A IQ L + EE L K++ LEK+++ EL
Sbjct: 1 MSVFGKLFGAGGGKAGKGGPTPQEA-------IQRLRDTEEMLSKKQEFLEKKIEQELTA 53
Query: 337 AKEFTRQKKKPQALQCLKKKKLLENEIANLDNMIMRVNEQRMMLEGQRTTTEVVSSMHTA 516
AK+ + K+ ALQ LK+KK E ++A +D + + QR LE T TEV+ +M A
Sbjct: 54 AKKHGTKNKRA-ALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYA 112
Query: 517 ALAAK---DNMKAMKIENV 564
A A K DNM K++ +
Sbjct: 113 AKAMKAAHDNMDIDKVDEL 131
>ref|NP_789782.1| Snf7 homologue associated with Alix 1 [Homo sapiens]
gi|24636296|sp|Q9H444|CTH8_HUMAN Protein c20orf178
gi|12314022|emb|CAC14088.1| dJ553F4.4 (Novel protein
similar to Drosophila CG8055 protein) [Homo sapiens]
gi|21708120|gb|AAH33859.1| Snf7 homologue associated
with Alix 1 [Homo sapiens] gi|32879760|dbj|BAC79375.1|
Snf7 homologue associated with Alix 1 [Homo sapiens]
gi|37362118|gb|AAQ91194.1| SNF7-2 [Homo sapiens]
Length = 224
Score = 75.5 bits (184), Expect = 5e-13
Identities = 51/139 (36%), Positives = 73/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 157 LKMFKKLFGQKPGTASSVPATSANAANKTISAIQNLTEHEESLEKRKALLEKRMDAELER 336
+ +F KLFG G A T A IQ L + EE L K++ LEK+++ EL
Sbjct: 1 MSVFGKLFGAGGGKAGKGGPTPQEA-------IQRLRDTEEMLSKKQEFLEKKIEQELTA 53
Query: 337 AKEFTRQKKKPQALQCLKKKKLLENEIANLDNMIMRVNEQRMMLEGQRTTTEVVSSMHTA 516
AK+ + K+ ALQ LK+KK E ++A +D + + QR LE T TEV+ +M A
Sbjct: 54 AKKHGTKNKRA-ALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYA 112
Query: 517 ALAAK---DNMKAMKIENV 564
A A K DNM K++ +
Sbjct: 113 AKAMKAAHDNMDIDKVDEL 131
