KCC001940A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001940A_C01 KCC001940A_c01
CAACCTCAACACGCCTTCACATTTATCCATACTGTGACATTATGCTCTGCCAGACCCGCG
CTTCTGTGCTCTCTCGCCCCATTGCTGCTCGCCGCAACCTGTGCGTCCGCACCATGGCCT
CCAAGGATAACTTCACGGCAGAGACTAAGATCAAGATCCGTCTTGACGCCAGCGCCAACG
GCTGCAGCGGCATGTTCTGGCGCTCCAAGCCCGACATGAACGCCAGCGTGTCGGCGCCCG
ACTGGCCGCGCAACGGCGCCGTGTTCCTGGGCTGGAAGAGCCAGGAGCACCCCGGCTGGG
TCAAGGTGGACCACGAGAAGGGCTACTGGATGCCCATCGAGCAGCACGGCAAGCCGGTCT
GCCACTTCGACGCCAAGTAAACGGGAGTGGAGCAGGACGTAATGAGGCGCGGGCATGGCT
CGGTGTGACTAGACCTGGTGTGGTGTGAGCAACGCACGGTGCTAGGTGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001940A_C01 KCC001940A_c01
         (470 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA42243.1| GLP_49_64409_65443 [Giardia lamblia ATCC 50803]         49  3e-05
gb|EAA42242.1| GLP_49_63778_65430 [Giardia lamblia ATCC 50803]         47  1e-04
ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    45  4e-04
ref|NP_251417.1| hypothetical protein [Pseudomonas aeruginosa PA...    44  0.001
gb|AAM00962.1|AC021892_26 hypothetical protein [Oryza sativa] gi...    42  0.003

>gb|EAA42243.1| GLP_49_64409_65443 [Giardia lamblia ATCC 50803]
          Length = 344

 Score = 48.9 bits (115), Expect = 3e-05
 Identities = 40/118 (33%), Positives = 57/118 (47%), Gaps = 3/118 (2%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P +  AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 59  ARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP 118

Query: 220 TPACRRPTGRATAPCSWAGRARSTPAGSRWTTRRATGCPSSSTASRSATSTPSKREWS 393
           TP  R          S +GRARST A S   TR      ++++A R++T TP++R  S
Sbjct: 119 TPTRR----------SASGRARSTTASSVTPTR-----STATSAQRASTPTPTRRSAS 161

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P +  AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 94  ARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTRSTATSAQRASTP 153

Query: 220 TPACRRPTGRA----------TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS----- 354
           TP  R  +GRA          T   + + +  STP  +R   R A+G   S+TAS     
Sbjct: 154 TPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPT 210

Query: 355 --------RSATSTPSKREWS 393
                   R++T TP++R  S
Sbjct: 211 MSTATSAQRASTPTPTRRSAS 231

 Score = 45.4 bits (106), Expect = 3e-04
 Identities = 42/138 (30%), Positives = 61/138 (43%), Gaps = 26/138 (18%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P +  AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 164 ARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP 223

Query: 220 TPACRRPTGRA----------TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS----- 354
           TP  R  +GRA          T   + + +  STP  +R   R A+G   S+TAS     
Sbjct: 224 TPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPT 280

Query: 355 --------RSATSTPSKR 384
                   R++T TP++R
Sbjct: 281 MSTATSAQRASTPTPTRR 298

 Score = 44.3 bits (103), Expect = 7e-04
 Identities = 43/141 (30%), Positives = 61/141 (42%), Gaps = 26/141 (18%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P    AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 129 ARSTTASSVTPTRSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP 188

Query: 220 TPACRRPTGRA----------TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS----- 354
           TP  R  +GRA          T   + + +  STP  +R   R A+G   S+TAS     
Sbjct: 189 TPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPT 245

Query: 355 --------RSATSTPSKREWS 393
                   R++T TP++R  S
Sbjct: 246 MSTATSAQRASTPTPTRRSAS 266

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 38/124 (30%), Positives = 56/124 (44%), Gaps = 23/124 (18%)
 Frame = +1

Query: 91  AATCASAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT*TPACRRPTGRA------ 252
           +A  AS P P R ++  R RS +  +  PT + A S   + T TP  R  +GRA      
Sbjct: 6   SAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTAS 65

Query: 253 ----TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS-------------RSATSTPSK 381
               T   + + +  STP  +R   R A+G   S+TAS             R++T TP++
Sbjct: 66  SVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPTMSTATSAQRASTPTPTR 122

Query: 382 REWS 393
           R  S
Sbjct: 123 RSAS 126

>gb|EAA42242.1| GLP_49_63778_65430 [Giardia lamblia ATCC 50803]
          Length = 550

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 47/164 (28%), Positives = 68/164 (40%), Gaps = 26/164 (15%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P +  AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 59  ARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP 118

Query: 220 TPACRRPTGRA----------TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS----- 354
           TP  R  +GRA          T   + + +  STP  +R   R A+G   S+TAS     
Sbjct: 119 TPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPT 175

Query: 355 --------RSATSTPSKREWSRT**GAGMARCD*TWCGVSNARC 462
                   R++T TP+K +  R      +  C+   C   N  C
Sbjct: 176 MSTATSAQRASTPTPTKTQCVR---ACQVDNCE--QCNADNVHC 214

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 26/141 (18%)
 Frame = +1

Query: 49  ARPALLCSLAPLLLAATCA---SAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT* 219
           AR     S+ P +  AT A   S P P R ++  R RS +  +  PT + A S   + T 
Sbjct: 24  ARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTP 83

Query: 220 TPACRRPTGRA----------TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS----- 354
           TP  R  +GRA          T   + + +  STP  +R   R A+G   S+TAS     
Sbjct: 84  TPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPT 140

Query: 355 --------RSATSTPSKREWS 393
                   R++T TP++R  S
Sbjct: 141 MSTATSAQRASTPTPTRRSAS 161

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 38/124 (30%), Positives = 56/124 (44%), Gaps = 23/124 (18%)
 Frame = +1

Query: 91  AATCASAPWPPRITSRQRLRSRSVLTPAPTAAAACSGAPSPT*TPACRRPTGRA------ 252
           +A  AS P P R ++  R RS +  +  PT + A S   + T TP  R  +GRA      
Sbjct: 6   SAQRASTPTPTRRSASGRARSTTASSVTPTMSTATSAQRASTPTPTRRSASGRARSTTAS 65

Query: 253 ----TAPCSWAGRARSTPAGSRWTTRRATGCPSSSTAS-------------RSATSTPSK 381
               T   + + +  STP  +R   R A+G   S+TAS             R++T TP++
Sbjct: 66  SVTPTMSTATSAQRASTPTPTR---RSASGRARSTTASSVTPTMSTATSAQRASTPTPTR 122

Query: 382 REWS 393
           R  S
Sbjct: 123 RSAS 126

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 35/127 (27%), Positives = 51/127 (39%), Gaps = 4/127 (3%)
 Frame = +1

Query: 31   TVTLCSARPALLCSLAPLLLAATCASAPWPPRITSRQRLRSRSVLTPAPTAAAACSG--- 201
            T T C++ P      +     +TCA     PR T+       +  TP  T     S    
Sbjct: 918  TTTTCTSGPTTTTPRSTTK-TSTCAPTTTTPRSTTTTSTSRPTTTTPRSTTTTTTSRPTT 976

Query: 202  -APSPT*TPACRRPTGRATAPCSWAGRARSTPAGSRWTTRRATGCPSSSTASRSATSTPS 378
              P  T TP+  RPT       +    +R T    R TT+ +T C  ++T  RS T+T +
Sbjct: 977  TTPRSTTTPSTSRPTTTTPRSTTTTSTSRPTTTTPRSTTKTST-CAPTTTTPRSTTTTTT 1035

Query: 379  KREWSRT 399
             R  + T
Sbjct: 1036 SRPTTTT 1042

 Score = 36.6 bits (83), Expect = 0.15
 Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
 Frame = +1

Query: 31   TVTLCSARPALLCSLAPLLLAATCASAPWPPRITSRQRLRSRSVLTPAPTAAAACSG--- 201
            T T  ++RP      +     +TCA     PR T+       +  TP  T     S    
Sbjct: 998  TTTTSTSRPTTTTPRSTTK-TSTCAPTTTTPRSTTTTTTSRPTTTTPRSTTTTTTSRPTT 1056

Query: 202  -APSPT*TPACRRPTGRATAPCSWAGRARSTPAGSRWTTRRATGCPSSSTASRSATSTPS 378
              P  T TP   RPT       +    +R T    R TT   T CP+++ ++    +T +
Sbjct: 1057 TTPRSTTTPCTSRPTTTTPRSTTTTTTSRPTTTTPRSTT---TPCPTTTPSASPTRTTTT 1113

Query: 379  KR 384
            +R
Sbjct: 1114 RR 1115

 Score = 36.2 bits (82), Expect = 0.20
 Identities = 38/132 (28%), Positives = 49/132 (36%), Gaps = 17/132 (12%)
 Frame = +1

Query: 31  TVTLCSARPALLCSLAPLLLAATCASAPWP--PRITSRQRLRSRSVLTPAPTAA----AA 192
           T T  ++RP    +  P     T  S P    PR T+    R  +  TP  T      A 
Sbjct: 227 TTTTSTSRPT---TTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTTSTCAP 283

Query: 193 CSGAPSPT*TPACRRPTG---RATAPCSWAGRARSTPAGSRWT--------TRRATGCPS 339
            +  P  T T    RPT    R T   S     R+TP  +  T        T R T  PS
Sbjct: 284 TTTTPRSTTTTTTSRPTTTTPRCTTTTSTCSPTRTTPRSTTTTSTSRPTTTTPRCTTTPS 343

Query: 340 SSTASRSATSTP 375
           ++   R  T+TP
Sbjct: 344 TTCTRRPTTTTP 355

 Score = 31.2 bits (69), Expect = 6.3
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
 Frame = +1

Query: 94  ATCASAPWPPRITSRQRLRSRSVLTP-APTAAAACSGAPSPT*TPACRRPTGRATAPCSW 270
           +TCA     PR T+       +  TP   T  + CS    PT T      T   + P + 
Sbjct: 279 STCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTSTCS----PTRTTPRSTTTTSTSRPTTT 334

Query: 271 AGRARSTPAGSRWTTRRATGCPSSST---ASRSATSTP 375
             R  +TP+ +  T R  T  P S+T    S   T+TP
Sbjct: 335 TPRCTTTPS-TTCTRRPTTTTPRSTTTTCTSGPTTTTP 371

>ref|NP_251417.1| hypothetical protein [Pseudomonas aeruginosa PA01]
            gi|11349655|pir||A83306 hypothetical protein PA2727
            [imported] - Pseudomonas aeruginosa (strain PAO1)
            gi|9948803|gb|AAG06115.1|AE004700_11 hypothetical protein
            PA2727 [Pseudomonas aeruginosa PAO1]
          Length = 1210

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 26/75 (34%), Positives = 37/75 (48%), Gaps = 11/75 (14%)
 Frame = -3

Query: 375  WRRSG-RPACRAARWASSSPSRGPP*PSRGAPGSSSPGTRRRC----------AASRAPT 229
            W  SG RPA +AARW + +PS     P + +P + +P  +RR            ASR+ T
Sbjct: 1136 WSASGYRPATKAARWRNCAPSPPTRPPCKPSPTACAPSAKRRTPGRKPSTNTRRASRSTT 1195

Query: 228  RWRSCRAWSARTCRC 184
            R  +   W AR+  C
Sbjct: 1196 RRPTAPGWQARSVPC 1210

>gb|AAM00962.1|AC021892_26 hypothetical protein [Oryza sativa] gi|31431069|gb|AAP52900.1|
           hypothetical protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 174

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 41/120 (34%), Positives = 48/120 (39%), Gaps = 1/120 (0%)
 Frame = -3

Query: 390 PLPFTWRRSGRPACRAARWASSSPSRGPP*PSRGAPGSSSPGTRRRCAASRAPTRWRSCR 211
           PLP     +GR    AA    S P   PP  +RG P    P TRRR  A+  P       
Sbjct: 2   PLPPLATTAGRGTPSAAGRGCSCP---PPATTRG-PAGLRPATRRRPPAAAPPP------ 51

Query: 210 AWSARTCRCSRWRWRQDGS*S*SLP*SYPWRP-WCGRTGCGEQQWGERAQKRGSGRA*CH 34
             SA     SR                 P RP W GR G G ++ GE  ++RG GR  CH
Sbjct: 52  --SAERRPASR----------------RPLRPRWMGRGGGGGEEEGEELEERGRGREVCH 93



EST assemble image


clone accession position
1 HC030c03_r AV634182 1 470
2 MX011b05_r BP086544 1 396




Chlamydomonas reinhardtii
Kazusa DNA Research Institute