KCC001934A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001934A_C01 KCC001934A_c01
ctgcCTTCTATTTCGCGACCTCCATACGTATTCTCACATCGGAACCTGGCGGGCTTCGGA
CAGTATGGCGGCCGTGCCGCTGGTGGTGGGTTTCTGAAGGACTTGAGGTGGTGTGGGGCG
AGGTTTACGCACGGACGTGGGGTAGGGGGCGCCACGGACTAGCGCCCCCTGTGTGGTACG
TAAGTGTGTGTAGAGCAGTGCCTACGAGAAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001934A_C01 KCC001934A_c01
         (211 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB90689.1| B1156H12.24 [Oryza sativa (japonica cultivar-gro...    40  0.008
gb|AAK93651.1| unknown protein [Arabidopsis thaliana]                  35  0.25
ref|NP_173441.1| anther-specific proline-rich protein APG [Arabi...    35  0.42
sp|P40602|APG_ARATH Anter-specific proline-rich protein APG prec...    35  0.42
pir||S21961 proline-rich protein APG - Arabidopsis thaliana gi|2...    35  0.42

>dbj|BAB90689.1| B1156H12.24 [Oryza sativa (japonica cultivar-group)]
           gi|20521468|dbj|BAB91976.1| OSJNBa0024F24.12 [Oryza
           sativa (japonica cultivar-group)]
          Length = 294

 Score = 40.4 bits (93), Expect = 0.008
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -3

Query: 176 PHRGR*SVAP-PTPRP-CVNLAPHHLKSFRNPPPAARPPYCPKPARFRCENTYGGREIE 6
           PHR R ++AP P+P P  V+ AP  + S R+PPP A PP          +N  GG E+E
Sbjct: 152 PHRRRATLAPHPSPSPPLVDQAPRSVVSARHPPPTAAPPTALMEVNQHDDNA-GGEELE 209

>gb|AAK93651.1| unknown protein [Arabidopsis thaliana]
          Length = 263

 Score = 35.4 bits (80), Expect = 0.25
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 176 PHRGR*SVAPPTPRPCVNLAPHHLKSFRNPPPAARPPYCPKPARFRCENTYGGR 15
           P RG+     P+PR  ++ +P   +S    P  +R  Y P+PAR R ++ +GG+
Sbjct: 205 PVRGKSRSLSPSPRRSISRSPRRSRS----PRRSRRSYTPEPARSRSQSPHGGQ 254

>ref|NP_173441.1| anther-specific proline-rich protein APG [Arabidopsis thaliana]
          Length = 1006

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 17/35 (48%), Positives = 18/35 (50%)
 Frame = -3

Query: 155 VAPPTPRPCVNLAPHHLKSFRNPPPAARPPYCPKP 51
           VAPP P PC +  P   K    PPPA  P  CP P
Sbjct: 23  VAPPGPSPCPSPPP---KPQPKPPPAPSPSPCPSP 54

>sp|P40602|APG_ARATH Anter-specific proline-rich protein APG precursor
           gi|16604458|gb|AAL24235.1| At1g20130/T20H2_9
           [Arabidopsis thaliana] gi|30725276|gb|AAP37660.1|
           At1g20130/T20H2_9 [Arabidopsis thaliana]
          Length = 534

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 17/35 (48%), Positives = 18/35 (50%)
 Frame = -3

Query: 155 VAPPTPRPCVNLAPHHLKSFRNPPPAARPPYCPKP 51
           VAPP P PC +  P   K    PPPA  P  CP P
Sbjct: 80  VAPPGPSPCPSPPP---KPQPKPPPAPSPSPCPSP 111

>pir||S21961 proline-rich protein APG - Arabidopsis thaliana
           gi|22599|emb|CAA42925.1| APG [Arabidopsis thaliana]
          Length = 534

 Score = 34.7 bits (78), Expect = 0.42
 Identities = 17/35 (48%), Positives = 18/35 (50%)
 Frame = -3

Query: 155 VAPPTPRPCVNLAPHHLKSFRNPPPAARPPYCPKP 51
           VAPP P PC +  P   K    PPPA  P  CP P
Sbjct: 80  VAPPGPSPCPSPPP---KPQPKPPPAPSPSPCPSP 111



EST assemble image


clone accession position
1 HC027g12_r AV633991 1 148
2 MX067g07_r BP088742 5 211




Chlamydomonas reinhardtii
Kazusa DNA Research Institute