KCC001930A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001930A_C01 KCC001930A_c01
gctccaGAGCATACGCATATAGTATATTGCTGGAAGCAGCATTAAAGGTAGTCCACACGC
TGCTCACGTCAGAGAGAATCGCGTGAAGAACTCCTCGCTCGCGGCCTCGAAGATGGCGCA
AATCACTCCGGAGGTCGTGCTTTCCTACACAAAACCAGCAAGCGGCTACCTGTGTCCCCT
GAACGCGAACACCTTCGGGATAGAGTTCCTGAAGTTCGAGATCAAGGAGTATGACACCAA
CACCGTCGTGTACCAGGTTGCCCGGGAGCCCGACTCGGAGCCGCTCCCCGAGGTGCTGGA
CCCAGAGATTGAGGACATGATTCGCAGCGTGAAGTACACATTTCCTGCGTCATTCCTCAA
GTTCAAGACCGTGCGGACGCTGCTGGAGTTCTGCGTAGGGCCACAGCCGGTCAGCAACCT
GCGCATGATTGAGCGGCACTTCTTCAAGGACAAGCTGGTCCGCACGTACGACTTCGAGTT
CGGCTTCTGCATCCCCAACAGCACCAACTCGTGGGAGGCCATCTACGATGTGCCCGAGTA
CCCGCCGGCGTCATCAACGACTAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001930A_C01 KCC001930A_c01
         (564 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_340557.1| hypothetical protein, conserved [Trypanosoma br...   141  5e-33
ref|NP_572389.1| CG1659-PA [Drosophila melanogaster] gi|9087206|...   136  2e-31
gb|AAK70467.1|AF387342_1 Unc119c [Danio rerio]                        133  1e-30
sp|Q17297|U119_CAEBR Unc-119 protein gi|7494515|pir||JC5728 neur...   132  2e-30
ref|NP_499399.1| UNCoordinated locomotion UNC-119, retinal prote...   132  4e-30

>ref|XP_340557.1| hypothetical protein, conserved [Trypanosoma brucei]
           gi|33348591|gb|AAQ15916.1| hypothetical protein,
           conserved [Trypanosoma brucei]
          Length = 196

 Score =  141 bits (356), Expect = 5e-33
 Identities = 69/149 (46%), Positives = 102/149 (68%), Gaps = 8/149 (5%)
 Frame = +2

Query: 119 QITPEVVLSYTKPASGYLCPLNANTFGIEFLKFEIKEYDTNTVVYQVAREPDSEP----- 283
           ++TPE VL  T P++G+LCP+ ANT+ IEF  F +++ DT  V+++V R+  + P     
Sbjct: 6   EVTPEHVLQLTAPSTGFLCPITANTYNIEFYSFVVRDADTKQVMFEVERDASTYPSVASL 65

Query: 284 --LPEVLDPEIEDMIRSVKYTFPASFLKFKTVRTLLEFCV-GPQPVSNLRMIERHFFKDK 454
             LPE    E +   R++ Y FP S L+ + V   L F V G +PV +LRMIERH+F++ 
Sbjct: 66  AQLPE----EQQQAARTIFYRFPPSMLRKQRVSATLLFGVNGDKPVPDLRMIERHYFRNT 121

Query: 455 LVRTYDFEFGFCIPNSTNSWEAIYDVPEY 541
           LV+T+DF+FGFCIP+S N+WEA+YDVP++
Sbjct: 122 LVKTFDFKFGFCIPHSRNTWEAVYDVPQF 150

>ref|NP_572389.1| CG1659-PA [Drosophila melanogaster] gi|9087206|sp|Q9XYQ2|U119_DROME
           Unc-119 protein homolog (DmUNC-119)
           gi|4838348|gb|AAD30967.1|AF119102_1 UNC-119 [Drosophila
           melanogaster] gi|7290806|gb|AAF46250.1| CG1659-PA
           [Drosophila melanogaster] gi|21428578|gb|AAM49949.1|
           LD43876p [Drosophila melanogaster]
          Length = 265

 Score =  136 bits (342), Expect = 2e-31
 Identities = 70/164 (42%), Positives = 101/164 (60%), Gaps = 17/164 (10%)
 Frame = +2

Query: 107 SKMAQITPEVVLSYTKPASGYLCPLNANTFGIEFLKFEIKEYDTNTVVYQVAREPDSEPL 286
           ++ + +TP+ VL  TK    YLC  NAN F I+F +F+I++ ++  V++++A+ P SE  
Sbjct: 63  AESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFKIRDLESGAVLFEIAKPP-SEQY 121

Query: 287 PEVLDPEIEDMI-----------------RSVKYTFPASFLKFKTVRTLLEFCVGPQPVS 415
           PE L  + E M+                 R V+Y F  +FL  KTV   +EF VG QP++
Sbjct: 122 PEGLSSD-ETMLAAAEKLSLDDTADPNAGRYVRYQFTPAFLNLKTVGATVEFTVGSQPLN 180

Query: 416 NLRMIERHFFKDKLVRTYDFEFGFCIPNSTNSWEAIYDVPEYPP 547
           N RMIERHFF+D+L++T+DFEFGFC P S N+ E IY+ P  PP
Sbjct: 181 NFRMIERHFFRDRLLKTFDFEFGFCFPFSKNTVEHIYEFPNLPP 224

>gb|AAK70467.1|AF387342_1 Unc119c [Danio rerio]
          Length = 243

 Score =  133 bits (335), Expect = 1e-30
 Identities = 66/145 (45%), Positives = 96/145 (65%), Gaps = 4/145 (2%)
 Frame = +2

Query: 122 ITPEVVLSYTKPASGYLCPLNANTFGIEFLKFEIKEYDTNTVVYQVAREPDSEPLPEVLD 301
           ITP+ VL     A  YLC L  N + I+F +F+I++ +T TV++++A+ P  +   E  D
Sbjct: 61  ITPDEVLGLRAVARDYLCKLEDNIYNIDFTRFKIRDLETGTVLFEIAKPPHCDLDEE--D 118

Query: 302 PEIEDMIRS----VKYTFPASFLKFKTVRTLLEFCVGPQPVSNLRMIERHFFKDKLVRTY 469
            E  D   S    V+Y F  +FLK +TV   +EF VG QPV+N RMIERH+F+D+L++++
Sbjct: 119 DENRDADTSAGRFVRYQFTPAFLKLRTVGATVEFTVGDQPVTNFRMIERHYFQDRLLKSF 178

Query: 470 DFEFGFCIPNSTNSWEAIYDVPEYP 544
           DF+FGFCIPNS N+ E IY+ P+ P
Sbjct: 179 DFDFGFCIPNSRNTCEHIYEFPQLP 203

>sp|Q17297|U119_CAEBR Unc-119 protein gi|7494515|pir||JC5728 neuronal UNC-119 protein -
           Caenorhabditis briggsae gi|1181703|gb|AAB41283.1|
           UNC-119
          Length = 217

 Score =  132 bits (333), Expect = 2e-30
 Identities = 68/145 (46%), Positives = 95/145 (64%), Gaps = 1/145 (0%)
 Frame = +2

Query: 107 SKMAQITPEVVLSYTKPASGYLCPLNANTFGIEFLKFEIKEYDTNTVVYQVAR-EPDSEP 283
           +K AQITP  VL+      G+LC  +AN + IEF KF+I++ DT  V++++A+ E D E 
Sbjct: 38  AKKAQITPNDVLALPGITQGFLCSPSANIYNIEFTKFQIRDLDTEQVLFEIAKPENDQEN 97

Query: 284 LPEVLDPEIEDMIRSVKYTFPASFLKFKTVRTLLEFCVGPQPVSNLRMIERHFFKDKLVR 463
                D   ++  R V+Y F  +FLK KTV   +EF VG  P+ + RMIERHFF D+L++
Sbjct: 98  -----DESPQESARYVRYRFAPNFLKLKTVGATVEFKVGDIPIHHFRMIERHFFFDRLLK 152

Query: 464 TYDFEFGFCIPNSTNSWEAIYDVPE 538
            +DFEFGFCIPNS N+ E IY+ P+
Sbjct: 153 CFDFEFGFCIPNSRNNCEHIYEFPQ 177

>ref|NP_499399.1| UNCoordinated locomotion UNC-119, retinal protein (unc-119)
           [Caenorhabditis elegans] gi|1717847|sp|Q10658|U119_CAEEL
           Unc-119 protein gi|7511682|pir||T23761 unc-119 protein -
           Caenorhabditis elegans gi|1055235|gb|AAC46919.1| unc-119
           gene product gi|3878736|emb|CAA97807.1| C. elegans
           UNC-119 protein (corresponding sequence M142.1)
           [Caenorhabditis elegans]
          Length = 219

 Score =  132 bits (331), Expect = 4e-30
 Identities = 67/140 (47%), Positives = 96/140 (67%)
 Frame = +2

Query: 119 QITPEVVLSYTKPASGYLCPLNANTFGIEFLKFEIKEYDTNTVVYQVAREPDSEPLPEVL 298
           QITP  VL+      G+LC  +AN + IEF KF+I++ DT  V++++A+ P++E   E L
Sbjct: 43  QITPNDVLALPGITQGFLCSPSANVYNIEFTKFQIRDLDTEHVLFEIAK-PENET-EENL 100

Query: 299 DPEIEDMIRSVKYTFPASFLKFKTVRTLLEFCVGPQPVSNLRMIERHFFKDKLVRTYDFE 478
             + E   R V+Y F  +FLK KTV   +EF VG  P+++ RMIERHFFKD+L++ +DFE
Sbjct: 101 QAQAESA-RYVRYRFAPNFLKLKTVGATVEFKVGDVPITHFRMIERHFFKDRLLKCFDFE 159

Query: 479 FGFCIPNSTNSWEAIYDVPE 538
           FGFC+PNS N+ E IY+ P+
Sbjct: 160 FGFCMPNSRNNCEHIYEFPQ 179



EST assemble image


clone accession position
1 LC030g04_r AV621065 1 532
2 LC033f08_r AV621270 7 539
3 HC027e04_r AV633966 22 565




Chlamydomonas reinhardtii
Kazusa DNA Research Institute