KCC001929A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001929A_C01 KCC001929A_c01
cgtggtcgcaatacagtgactgagagacaagctAGCTGCACACTCTGCTTGGAAGCACCT
CCAGCACAAATGCAGTCGACCGTTCAGCTGACTCGCCGCAGCACTGTGGTGCGCCGATGT
GAGGGCCGCATTTGCAGGCCCTTTGCCCCCTGCCACCCTGTCTCTCACATTGCTAAAGCT
TCGCCAGCGACTGAGGAGCCCAAGACGGCCAACAAGTCTGAGGCCGAGCTGGCAACTGAG
AAATTTGGACTGGAGGCTGGCTTGCTCACTGCTCTGACCTCCAAGGACGAGGGCGGTGAG
GGCAAGCTCAGCAACACGGAGCAGGCGAAGCGGCTGCTGGCGCAGTACGGCTCCGCGTAC
CTCATCACCTCCATCTCCTTCGCCATCGTCTCCTTCGCAGCATGCTACCTGGCAGTGGAC
TCAGGTGTGGACATGGCCGGTGTGCTGGCCCGGTTCGGGCTGGAGGCGTCAGACACCAGC
GAGAAGGTGGGCACGTTCGCTCTGGCCTACGCCGCGCACAAGGCGCTGTCGCCGGTGCGC
TTCCCGCCCACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001929A_C01 KCC001929A_c01
         (552 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE01524.1| OJ991214_12.13 [Oryza sativa (japonica cultivar-...   130  9e-30
gb|AAM64746.1| unknown [Arabidopsis thaliana]                         130  1e-29
ref|NP_565645.1| expressed protein [Arabidopsis thaliana] gi|253...   129  3e-29
ref|XP_317011.1| ENSANGP00000019155 [Anopheles gambiae] gi|21300...    68  9e-11
ref|NP_080188.2| RIKEN cDNA 2010011I20 [Mus musculus] gi|1674066...    65  8e-10

>emb|CAE01524.1| OJ991214_12.13 [Oryza sativa (japonica cultivar-group)]
          Length = 187

 Score =  130 bits (328), Expect = 9e-30
 Identities = 67/125 (53%), Positives = 85/125 (67%), Gaps = 3/125 (2%)
 Frame = +1

Query: 187 ATEEPKTANKSEAELATEKFGLEAGLLTALTSKD---EGGEGKLSNTEQAKRLLAQYGSA 357
           A +E K      AE  TEK+GLE GL    +SK+   E G+ + S TEQAK LLA+YG A
Sbjct: 44  AVQETKEGEAQTAEEITEKYGLEFGLWKVFSSKEGEEEEGKTRKSRTEQAKELLAKYGGA 103

Query: 358 YLITSISFAIVSFAACYLAVDSGVDMAGVLARFGLEASDTSEKVGTFALAYAAHKALSPV 537
           YL TSI+ +++SF  CYL V +GVD+  +L + G+   +T  KVGTFALAYAAHKA SP+
Sbjct: 104 YLATSITLSLISFTLCYLLVSAGVDVQDLLGKVGIATGETGGKVGTFALAYAAHKAASPI 163

Query: 538 RFPPT 552
           RFPPT
Sbjct: 164 RFPPT 168

>gb|AAM64746.1| unknown [Arabidopsis thaliana]
          Length = 201

 Score =  130 bits (327), Expect = 1e-29
 Identities = 68/129 (52%), Positives = 91/129 (69%), Gaps = 5/129 (3%)
 Frame = +1

Query: 181 SPATEEPKTANKSEAELATEKFGLEAGLLTALTSKD-EGGEG----KLSNTEQAKRLLAQ 345
           SP +  P   +   AE  T+K+GLE GL   L+SKD EG +G    K S T++AK LLA+
Sbjct: 53  SPPSSSPPPPS---AEEVTKKYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAK 109

Query: 346 YGSAYLITSISFAIVSFAACYLAVDSGVDMAGVLARFGLEASDTSEKVGTFALAYAAHKA 525
           YG AYL+TSI+ +++SF+ CY+ V SGVD+  +L + G+  ++T EKVG FALAYAAHKA
Sbjct: 110 YGGAYLVTSITLSLISFSLCYVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKA 169

Query: 526 LSPVRFPPT 552
            SP+RFPPT
Sbjct: 170 ASPIRFPPT 178

>ref|NP_565645.1| expressed protein [Arabidopsis thaliana] gi|25370728|pir||B84671
           hypothetical protein At2g27290 [imported] - Arabidopsis
           thaliana gi|5306268|gb|AAD42000.1| expressed protein
           [Arabidopsis thaliana]
          Length = 201

 Score =  129 bits (323), Expect = 3e-29
 Identities = 68/129 (52%), Positives = 90/129 (69%), Gaps = 5/129 (3%)
 Frame = +1

Query: 181 SPATEEPKTANKSEAELATEKFGLEAGLLTALTSKD-EGGEG----KLSNTEQAKRLLAQ 345
           SP +  P   +   AE  T+K+GLE GL   L+SKD EG +G    K S T++AK LLA+
Sbjct: 53  SPPSSSPPPPS---AEEVTKKYGLEVGLWKILSSKDDEGSDGDNKKKKSKTDEAKELLAK 109

Query: 346 YGSAYLITSISFAIVSFAACYLAVDSGVDMAGVLARFGLEASDTSEKVGTFALAYAAHKA 525
           YG AYL TSI+ +++SF+ CY+ V SGVD+  +L + G+  ++T EKVG FALAYAAHKA
Sbjct: 110 YGGAYLATSITLSLISFSLCYVLVTSGVDVQALLLKVGISTNETGEKVGAFALAYAAHKA 169

Query: 526 LSPVRFPPT 552
            SP+RFPPT
Sbjct: 170 ASPIRFPPT 178

>ref|XP_317011.1| ENSANGP00000019155 [Anopheles gambiae] gi|21300574|gb|EAA12719.1|
           ENSANGP00000019155 [Anopheles gambiae str. PEST]
          Length = 370

 Score = 67.8 bits (164), Expect = 9e-11
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
 Frame = +1

Query: 163 SHIAKASPATEEPKTANKSEAELATEKFGLEAGLLTALTSKDEGGEGKLSNTEQAKRLLA 342
           SH+   S A     +A+ S  E  +E  G+           +E     +S  ++ K+ + 
Sbjct: 211 SHLLAVSFARSNKASASGSAGEQNSEGKGVA----------NEEQVVPVSRKDRLKKAIK 260

Query: 343 QYGSAYLITSISFAIVSFAACYLAVDSGVDMAGVLARFGLEASDTSEK----VGTFALAY 510
           +YGS  L+  +S ++ S   CYL V SG+DM  +L R G   S  + K     GTF +AY
Sbjct: 261 EYGSTVLVFHVSISLASLGTCYLLVSSGIDMVSLLERMGWGDSALASKAGAGAGTFVIAY 320

Query: 511 AAHKALSPVRFPPT 552
           A HK  +PVR   T
Sbjct: 321 AIHKVFAPVRISIT 334

>ref|NP_080188.2| RIKEN cDNA 2010011I20 [Mus musculus] gi|16740664|gb|AAH16210.1|
           RIKEN cDNA 2010011I20 [Mus musculus]
           gi|35505397|gb|AAH57642.1| Unknown (protein for
           MGC:67851) [Mus musculus]
          Length = 190

 Score = 64.7 bits (156), Expect = 8e-10
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
 Frame = +1

Query: 292 GGEGKLSNTEQAKRLLAQYGSAYLITSISFAIVSFAACYLAVDSGVDMAGVLARFGLEAS 471
           G E KLS T+Q K++  +YG+  +   I  ++VS    Y  V SG+DM+ +L + G + S
Sbjct: 76  GTEKKLSRTQQLKKVFQEYGAVGVSMHIGISLVSLGIFYTVVSSGIDMSAILLKLGFKES 135

Query: 472 DTSEKV----GTFALAYAAHKALSPVRFPPT 552
               K+     TF +AYA HK  +PVR   T
Sbjct: 136 LVQSKMAAGTSTFVVAYAIHKLFAPVRISIT 166



EST assemble image


clone accession position
1 HC027c10_r AV633949 1 523
2 LC018b02_r AV620139 34 552




Chlamydomonas reinhardtii
Kazusa DNA Research Institute