KCC001928A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001928A_C01 KCC001928A_c01
tcctactcactaggtattaggatgtCTCTTTTGAGGGCCCCGGCTGTGGCTGGCCGTGCC
GCGAGCGGTGCGACCATGCCCTCTTGCCCACGCAGCGTTCGCGCCAGCGCTTTTAGCGGC
CGCGTGTGCTCGCGTGCATTCCAGTCGCTTGCTCGCCCCGGCCGTGTGCACGCGGTGGCC
CCGGTCTCCGTCGCTGCGCCTGTTGAGCTGAAGACTGGCAAGCCCAAGCGCGAGGACGTG
ATCACCGGCTCGGCCGACAACAATGTTTCTGACTATATTTATGAGAAGATGGGTGCGGAC
CTCCATCGCCAGCCGGACCACCCAATTTGCATAATTAAGCAGGCCATTTACGACTTCTTT
GAGAAGCGCAACCCGGGCATGTTTAAGACGTTCGACGACCGCTATCCCATCGTCACCACG
CACGCCAACTTCGATGAGGTGCTGGTGCCAAAGGACCACATCTCCCGCTCCCCCAACGAC
ACGTACTATGTGGATGCGAACACCGTGCTGCGCTGCCACACCTCGGCGCACCAGGCCGAG
ACGCTGCGCGCCGGCCACCCCGCCTTCCTGGTCACCGGCGACGTCTACCGCCGCGACTCC
ATCGACTCCACTCACTACCCCGTGTTCCACCAGATGGAGGGCGTGCGCGTGTTCACGGAG
GCGGAGTGGACCGCCGCTGGCGCGGACGCCACGGCCCTGGCGGAGAAGGACCTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001928A_C01 KCC001928A_c01
         (715 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_567061.1| phenylalanine-tRNA synthetase-related protein [...   211  1e-53
pir||T45974 phenylalanine-tRNA synthetase-like protein - Arabido...   210  2e-53
gb|AAO51910.1| similar to Arabidopsis thaliana (Mouse-ear cress)...   149  3e-35
ref|XP_225279.2| similar to RIKEN cDNA 2810431B21 [Rattus norveg...   145  8e-34
ref|NP_006558.1| phenylalanine-tRNA synthetase [Homo sapiens] gi...   142  4e-33

>ref|NP_567061.1| phenylalanine-tRNA synthetase-related protein [Arabidopsis
           thaliana] gi|13877969|gb|AAK44062.1|AF370247_1 putative
           phenylalanine-tRNA synthetase [Arabidopsis thaliana]
           gi|17104697|gb|AAL34237.1| putative phenylalanine-tRNA
           synthetase [Arabidopsis thaliana]
          Length = 429

 Score =  211 bits (536), Expect = 1e-53
 Identities = 102/163 (62%), Positives = 119/163 (72%), Gaps = 1/163 (0%)
 Frame = +1

Query: 229 REDVIT-GSADNNVSDYIYEKMGADLHRQPDHPICIIKQAIYDFFEKRNPGMFKTFDDRY 405
           R DV+      NNV D I+ K+G  LHR+  HPI I+K AIYD+F+      F+ F+D  
Sbjct: 64  RNDVVREDDPTNNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLS 123

Query: 406 PIVTTHANFDEVLVPKDHISRSPNDTYYVDANTVLRCHTSAHQAETLRAGHPAFLVTGDV 585
           PIVTT  NFD+VLVP DH+SRS NDTYYVD+ TVLRCHTSAHQAE LR GH  FLVTGDV
Sbjct: 124 PIVTTKQNFDDVLVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELLRKGHSRFLVTGDV 183

Query: 586 YRRDSIDSTHYPVFHQMEGVRVFTEAEWTAAGADATALAEKDL 714
           YRRDSIDSTHYPVFHQMEG  VF+  +W  +G D+T  A +DL
Sbjct: 184 YRRDSIDSTHYPVFHQMEGFCVFSPEDWNGSGKDSTLYAAEDL 226

>pir||T45974 phenylalanine-tRNA synthetase-like protein - Arabidopsis thaliana
           gi|6735326|emb|CAB68152.1| phenylalanine-tRNA
           synthetase-like protein [Arabidopsis thaliana]
          Length = 435

 Score =  210 bits (534), Expect = 2e-53
 Identities = 99/152 (65%), Positives = 115/152 (75%)
 Frame = +1

Query: 259 NNVSDYIYEKMGADLHRQPDHPICIIKQAIYDFFEKRNPGMFKTFDDRYPIVTTHANFDE 438
           NNV D I+ K+G  LHR+  HPI I+K AIYD+F+      F+ F+D  PIVTT  NFD+
Sbjct: 81  NNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLSPIVTTKQNFDD 140

Query: 439 VLVPKDHISRSPNDTYYVDANTVLRCHTSAHQAETLRAGHPAFLVTGDVYRRDSIDSTHY 618
           VLVP DH+SRS NDTYYVD+ TVLRCHTSAHQAE LR GH  FLVTGDVYRRDSIDSTHY
Sbjct: 141 VLVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELLRKGHSRFLVTGDVYRRDSIDSTHY 200

Query: 619 PVFHQMEGVRVFTEAEWTAAGADATALAEKDL 714
           PVFHQMEG  VF+  +W  +G D+T  A +DL
Sbjct: 201 PVFHQMEGFCVFSPEDWNGSGKDSTLYAAEDL 232

>gb|AAO51910.1| similar to Arabidopsis thaliana (Mouse-ear cress).
           Phenylalanine-tRNA synthetase-like protein
           [Dictyostelium discoideum]
          Length = 454

 Score =  149 bits (377), Expect = 3e-35
 Identities = 74/138 (53%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
 Frame = +1

Query: 256 DNNVSDYIYEKMGADLHRQPDHPICIIKQAIYDFFEKR---NPGMFKTFDDRYPIVTTHA 426
           + N+S  I EK+G +LH + DHP+ IIK+ I   F+ +       F+ FD   P V+   
Sbjct: 49  NGNISKSITEKIGKNLHCKRDHPLNIIKKKIQYHFQNKLSDEEHKFQFFDSFEPKVSVKE 108

Query: 427 NFDEVLVPKDHISRSPNDTYYVDANTVLRCHTSAHQAETLRAGHPAFLVTGDVYRRDSID 606
           NFDE+L P DH+ RSPNDTYY   + +LR HTSAHQ++ LR    AFLVTGDVYRRD+ID
Sbjct: 109 NFDELLFPVDHVGRSPNDTYYFSKDQLLRTHTSAHQSQLLREQEKAFLVTGDVYRRDTID 168

Query: 607 STHYPVFHQMEGVRVFTE 660
           + HYPVFHQMEGV+VF +
Sbjct: 169 AVHYPVFHQMEGVKVFKD 186

>ref|XP_225279.2| similar to RIKEN cDNA 2810431B21 [Rattus norvegicus]
          Length = 316

 Score =  145 bits (365), Expect = 8e-34
 Identities = 84/202 (41%), Positives = 114/202 (55%), Gaps = 5/202 (2%)
 Frame = +1

Query: 109 AFSGRVCSRAFQSLARPGRVHAVAPVSVAAPVELKTGKPKREDVITGSADNNVSDYIYEK 288
           A+  R  +  F     PGRV           +EL  GK   +D  T     N++  +  K
Sbjct: 31  AWGSRPAASQFAVQGAPGRV-----------LEL-LGKSYPQDDHT-----NLTQKVLSK 73

Query: 289 MGADLHRQPDHPICIIKQAIYDFFEKRNPG-----MFKTFDDRYPIVTTHANFDEVLVPK 453
           +G +LH Q  HP+ +IK+ + + F ++  G     +F  +D   P+VTT  NFD +L+P 
Sbjct: 74  VGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLFSVYDQLSPVVTTWQNFDSLLIPA 133

Query: 454 DHISRSPNDTYYVDANTVLRCHTSAHQAETLRAGHPAFLVTGDVYRRDSIDSTHYPVFHQ 633
           DH SR   D YY++   +LR HTSAHQ + L AG  AFLV GDVYRRD IDS HYPVFHQ
Sbjct: 134 DHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNAFLVVGDVYRRDQIDSQHYPVFHQ 193

Query: 634 MEGVRVFTEAEWTAAGADATAL 699
           +EGVR+F++ E  A   D  +L
Sbjct: 194 LEGVRLFSKHELFAGVKDGESL 215

>ref|NP_006558.1| phenylalanine-tRNA synthetase [Homo sapiens]
           gi|3983103|gb|AAC83802.1| phenylalanine-tRNA synthetase
           [Homo sapiens] gi|18044251|gb|AAH20239.1|
           Phenylalanine-tRNA synthetase [Homo sapiens]
           gi|18088902|gb|AAH21112.1| Phenylalanine-tRNA synthetase
           [Homo sapiens]
          Length = 451

 Score =  142 bits (359), Expect = 4e-33
 Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 5/152 (3%)
 Frame = +1

Query: 259 NNVSDYIYEKMGADLHRQPDHPICIIKQAIYDFFEKRNPGMFKT-----FDDRYPIVTTH 423
           +N++  +  ++G +LH Q  HP+ +IK+ + + F K+  G F T     +D+  P+VTT 
Sbjct: 64  SNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTW 123

Query: 424 ANFDEVLVPKDHISRSPNDTYYVDANTVLRCHTSAHQAETLRAGHPAFLVTGDVYRRDSI 603
            NFD +L+P DH SR   D YY++   +LR HTSAHQ + L AG  AFLV GDVYRRD I
Sbjct: 124 QNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQI 183

Query: 604 DSTHYPVFHQMEGVRVFTEAEWTAAGADATAL 699
           DS HYP+FHQ+E VR+F++ E  A   D  +L
Sbjct: 184 DSQHYPIFHQLEAVRLFSKHELFAGIKDGESL 215



EST assemble image


clone accession position
1 MXL027f04_r BP094696 1 291
2 MX024g07_r BP087084 14 463
3 HC027c04_r AV633943 33 502
4 LC038a11_r AV621582 316 715




Chlamydomonas reinhardtii
Kazusa DNA Research Institute