KCC001926A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001926A_C01 KCC001926A_c01
gcagattgcgaagatagataccctgcaggctgaggtacaggggtttgcatttgttgatgt
gatgcagttattctatcCCCAGGCGCTGAGGACTGTGTGTGGACTGCATAGGGATAGCGA
GGCCAGGGAGGAGCAGGCACTTGGTGTGGGTGGCCTGTTCTCTGTGGACCTGAAGCAGGT
GGCGCAGAACTTTGGCAAGAGGTGTGCTGACAGTCGCATTCCTGCCGACGTGCGTAAGGA
TTATGGCTATGCAGCGGCACGTTCATTCTTTCTTGCACTGGCCAACATTGGCACGCATGT
TTACCCCAAATTTCGTGTGGTGCCTGCTCATGACCTCCAAGCATTCACTGACTTGGTGAG
ATCATGGAGCGTAGAACTCAGAGTGCCTGTTTCCGTGGCGGCAAATGCCCTGATTACACT
GTATGTGCTGGCTGTGTTTCCAGTAGGTGGTGTTGACGGCCCACCTGATCAGCTGCCGGT
GGACCCCACGGCACCCAAGTGGGCAGGGAAGGAGCGGTACCTGCCAGCACATGTGGGACC
CAACCAGGGCCCGCAACCCATCCGCGAGCATGTGCAGGCCATGCATGGCTTTATGCGAAA
CCATGGGATTGTGTATGATAAGCCATTTCACACGCTGTGCGTGCCGTTGGTGTCAGAGCG
GACCCGCTACGGGCTGGAGGTGTGGCCACAGGGGCGCATCCCCACGGTGTGTACTGAGAG
GAAGCCCGCTGCTCAGGGTGGCCAGTACATTGCAGAGTTTAGCAGCGCGACCGTTGAGCT
GGGCGTGGGAGCGGACATGATTCACGTGGTGCCTTACTTGAATCCAGTCCATCGTGTGGG
GCGTGGTGGTACTTGTGTGTTCCAGGGCGGTGGGGGTTCCCAGCCGTGCTGGTGGGGCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001926A_C01 KCC001926A_c01
         (900 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA15658.1| dJ212G6.2 (properdin P factor, complement) [Homo...    45  0.001
ref|NP_002612.1| properdin P factor, complement [Homo sapiens] g...    40  0.041
gb|AAB63280.1| properdin [Homo sapiens]                                40  0.041
gb|AAB62886.1| properdin [Homo sapiens]                                40  0.041
gb|AAC51626.1| properdin [Homo sapiens]                                40  0.041

>emb|CAA15658.1| dJ212G6.2 (properdin P factor, complement) [Homo sapiens]
          Length = 454

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 43/144 (29%), Positives = 52/144 (35%), Gaps = 5/144 (3%)
 Frame = -2

Query: 899 CPTSTAGNPHRPGTHKYH--HAPHDGLDSSKAPRESCPLPRPAQRSRC*TLQCTGHPEQR 726
           CPTS  G PH P   +     AP     S K P + CP     QR      +CTG P   
Sbjct: 190 CPTSCHGGPHEPKETRSRKCSAPE---PSQKPPGKPCPGLAYEQR------RCTGLPPCP 240

Query: 725 ASSQYTPWGCAPVATPPARSGSALTPTARTACEMAYHTQSHGFA*SHAWPAHARGWVAGP 546
            +  + PWG  PV+  P   G   T   RT               +H  P H   + AG 
Sbjct: 241 VAGGWGPWG--PVSPCPVTCGLGQTMEQRTC--------------NHPVPQHGGPFCAGD 284

Query: 545 GWVPHVLAGTAPSLPT---WVPWG 483
               H+   TA   P    W  WG
Sbjct: 285 ATRTHI-CNTAVPCPVDGEWDSWG 307

>ref|NP_002612.1| properdin P factor, complement [Homo sapiens]
           gi|464473|sp|P27918|PROP_HUMAN Properdin precursor
           (Factor P) gi|346313|pir||S29126 properdin precursor
           [validated] - human gi|35678|emb|CAA40914.1| properdin
           [Homo sapiens] gi|35680|emb|CAA50220.1| properdin [Homo
           sapiens] gi|517063|gb|AAA36489.1| complement omponent
           properdin [Homo sapiens] gi|16041751|gb|AAH15756.1|
           Properdin P factor, complement [Homo sapiens]
           gi|31096354|gb|AAP43692.1| properdin P factor,
           complement [Homo sapiens]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.041
 Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
 Frame = -2

Query: 899 CPTSTAGNPHRPGTHKYHH--APHDGLDSSKAPRESCPLPRPAQRSRC*TLQCTGHPEQR 726
           C  S  G PH P   +     AP     S K P + CP     QR      +CTG P   
Sbjct: 205 CSASCHGGPHEPKETRSRKCSAPEP---SQKPPGKPCPGLAYEQR------RCTGLPPCP 255

Query: 725 ASSQYTPWGCAPVATPPARSGSALTPTARTACEMAYHTQSHGFA*SHAWPAHARGWVAGP 546
            +  + PWG  PV+  P   G   T   RT               +H  P H   + AG 
Sbjct: 256 VAGGWGPWG--PVSPCPVTCGLGQTMEQRTC--------------NHPVPQHGGPFCAGD 299

Query: 545 GWVPHVLAGTAPSLPT---WVPWG 483
               H+   TA   P    W  WG
Sbjct: 300 ATRTHI-CNTAVPCPVDGEWDSWG 322

>gb|AAB63280.1| properdin [Homo sapiens]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.041
 Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
 Frame = -2

Query: 899 CPTSTAGNPHRPGTHKYHH--APHDGLDSSKAPRESCPLPRPAQRSRC*TLQCTGHPEQR 726
           C  S  G PH P   +     AP     S K P + CP     QR      +CTG P   
Sbjct: 205 CSASCHGGPHEPKETRSRKCSAPEP---SQKPPGKPCPGLAYEQR------RCTGLPPCP 255

Query: 725 ASSQYTPWGCAPVATPPARSGSALTPTARTACEMAYHTQSHGFA*SHAWPAHARGWVAGP 546
            +  + PWG  PV+  P   G   T   RT               +H  P H   + AG 
Sbjct: 256 VAGGWGPWG--PVSPCPVTCGLGQTMEQRTC--------------NHPVPQHGGPFCAGD 299

Query: 545 GWVPHVLAGTAPSLPT---WVPWG 483
               H+   TA   P    W  WG
Sbjct: 300 ATRTHI-CNTAVPCPVDGEWDSWG 322

>gb|AAB62886.1| properdin [Homo sapiens]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.041
 Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
 Frame = -2

Query: 899 CPTSTAGNPHRPGTHKYHH--APHDGLDSSKAPRESCPLPRPAQRSRC*TLQCTGHPEQR 726
           C  S  G PH P   +     AP     S K P + CP     QR      +CTG P   
Sbjct: 205 CSASCHGGPHEPKETRSRKCSAPEP---SQKPPGKPCPGLAYEQR------RCTGLPPCP 255

Query: 725 ASSQYTPWGCAPVATPPARSGSALTPTARTACEMAYHTQSHGFA*SHAWPAHARGWVAGP 546
            +  + PWG  PV+  P   G   T   RT               +H  P H   + AG 
Sbjct: 256 VAGGWGPWG--PVSPCPVTCGLGQTMEQRTC--------------NHPVPQHGGPFCAGD 299

Query: 545 GWVPHVLAGTAPSLPT---WVPWG 483
               H+   TA   P    W  WG
Sbjct: 300 ATRTHI-CNTAVPCPVDGEWDSWG 322

>gb|AAC51626.1| properdin [Homo sapiens]
          Length = 469

 Score = 40.4 bits (93), Expect = 0.041
 Identities = 41/144 (28%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
 Frame = -2

Query: 899 CPTSTAGNPHRPGTHKYHH--APHDGLDSSKAPRESCPLPRPAQRSRC*TLQCTGHPEQR 726
           C  S  G PH P   +     AP     S K P + CP     QR      +CTG P   
Sbjct: 205 CSASCHGGPHEPKETRSRKCSAPEP---SQKPPGKPCPGLAYEQR------RCTGLPPCP 255

Query: 725 ASSQYTPWGCAPVATPPARSGSALTPTARTACEMAYHTQSHGFA*SHAWPAHARGWVAGP 546
            +  + PWG  PV+  P   G   T   RT               +H  P H   + AG 
Sbjct: 256 VAGGWGPWG--PVSPCPVTCGLGQTMEQRTC--------------NHPVPQHGGPFCAGD 299

Query: 545 GWVPHVLAGTAPSLPT---WVPWG 483
               H+   TA   P    W  WG
Sbjct: 300 ATRTHI-CNTAVPCPVDGEWDSWG 322



EST assemble image


clone accession position
1 MX014d01_r BP086683 1 399
2 MX010b12_r BP086498 78 580
3 LC091a05_r AV625331 102 580
4 LC094b12_r AV625532 162 530
5 LC037e04_r AV621539 192 687
6 LC023c05_r AV620524 255 566
7 HC032a10_r AV634335 272 770
8 HC027a11_r AV633929 272 783
9 LC085g12_r AV625018 284 773
10 HCL007b04_r AV639913 317 648
11 LC036f08_r AV621476 331 847
12 LC049b07_r AV622398 366 850
13 LC039g03_r AV621693 368 819
14 LC011f06_r AV619676 368 867
15 LC079a03_r AV624531 370 903
16 LC081a02_r AV624667 375 848
17 MX020b05_r BP086914 375 763




Chlamydomonas reinhardtii
Kazusa DNA Research Institute