KCC001920A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001920A_C01 KCC001920A_c01
cccgcccataCTTTTGCACTCTCTTAAAGCTGTACTATGGGGCGCAAGCTCAGTGCTCCC
ACCCACCAGCTCCACGCACCATTTATGCCTGACTGCCCTCCTGCCTCACACACCTGCCTG
GTCAGCATACGGTAATGACACTCTGCTTCTTCTTGCTCATGTCGCATTCGACTCTTCGTC
CTTTTGCACCATTCGCCCGCTCCGTGCAACGCATGCAGGGGGGCCTTCGCGCGTAGCCCA
ATGCGCACGAGGCAGCTCCGCTGCTCGTGAACAAACATGCATGTCTAATCAGCGAATCCG
CCCCTCGTACCAACCGCCGTGCCCTCAACTCGGGAACACAGCACGAAGCAAACAAACACA
AACAAAATGCTCACGCACACAGTAATTCAATCAACAGCCGATGCAGCGCAACCTGCATAC
GTAAAACCGCGTGCACCATCGCGCTCTCCATTTCGGTCAACGCAGGGAGGTGCCGGCATC
TGTTCTTCTCTTCTGACTCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001920A_C01 KCC001920A_c01
         (502 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_631176.1| conserved hypothetical protein [Streptomyces co...    39  0.027
gb|AAF35388.1|AF225874_1 leptin receptor long insert isoform [Ma...    35  0.52
gb|AAG00454.1| adipsin [Ornithorhynchus anatinus]                      35  0.67
ref|XP_055834.1| similar to KIAA1908 protein [Homo sapiens] gi|2...    35  0.67
dbj|BAB67801.1| KIAA1908 protein [Homo sapiens]                        35  0.67

>ref|NP_631176.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
           gi|9885213|emb|CAC04221.1| conserved hypothetical
           protein [Streptomyces coelicolor A3(2)]
          Length = 366

 Score = 39.3 bits (90), Expect = 0.027
 Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 2/63 (3%)
 Frame = +2

Query: 20  SLKAVLWGASSVLPPTSSTHHLCLTALLPHTPAWSAYGNDTLL--LLAHVAFDSSSFCTI 193
           S++A++WG + + P    T HL  T + P  P    YGN  +L  LL     D+S  C  
Sbjct: 229 SVRAIVWGGTHMDP---DTRHLLATEVFPEVPLIGMYGNTMMLTALLERAGLDASQPCVF 285

Query: 194 RPL 202
            P+
Sbjct: 286 DPV 288

>gb|AAF35388.1|AF225874_1 leptin receptor long insert isoform [Macaca mulatta]
          Length = 1194

 Score = 35.0 bits (79), Expect = 0.52
 Identities = 19/55 (34%), Positives = 25/55 (44%)
 Frame = +3

Query: 12   FCTLLKLYYGAQAQCSHPPAPRTIYA*LPSCLTHLPGQHTVMTLCFFLLMSHSTL 176
            F  L +L   +QAQ  HPP P  +    P    HL  +HT    C  LL+   T+
Sbjct: 893  FVMLPRLVLNSQAQVIHPPRPPKVLELQPETFEHLFIKHTASVTCGPLLLEPETI 947

>gb|AAG00454.1| adipsin [Ornithorhynchus anatinus]
          Length = 159

 Score = 34.7 bits (78), Expect = 0.67
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +2

Query: 32  VLWGASSVLPPTSSTHHLCLTALLPHTPAWSAYGNDTLLLLAHVAFDSSSFCTIRPLRAT 211
           VL GA S+  P SS H   + A++PH P      ND  LLL  +A   +    ++PL   
Sbjct: 21  VLLGAHSLSQPESSKHLYVVQAVIPH-PDSHPDNNDHDLLLLKLAQKVTLSERVKPLAFQ 79

Query: 212 HAGGPSRVAQCARGSSAAREQTCMSNQRIRPSY-QPPCP 325
                 R   CAR    A   T   +Q     +  P CP
Sbjct: 80  RVDRTCREGPCARWPVGASPTTWARSQTSCSRWICPSCP 118

>ref|XP_055834.1| similar to KIAA1908 protein [Homo sapiens]
           gi|21749324|dbj|BAC03573.1| unnamed protein product
           [Homo sapiens]
          Length = 264

 Score = 34.7 bits (78), Expect = 0.67
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = +2

Query: 116 AWSAYGNDTLLLLAHVAFDSSSFCTIRPLRATHAGGPSRVAQCARGSSAAREQTCMSNQR 295
           AW    +      AHV    +S C  RP R     G S +AQ A+  S      C  + R
Sbjct: 40  AWGGVWSGEAHPCAHVLRPPASPCPPRPRRGCGDSGSSGMAQRAQAGSNQSRGKCGRDGR 99

Query: 296 IRPSYQPPCPQLGNTARSKQTQ 361
             P   P  P+      S +T+
Sbjct: 100 CPPRSSPGAPEAAERVESAETR 121

>dbj|BAB67801.1| KIAA1908 protein [Homo sapiens]
          Length = 445

 Score = 34.7 bits (78), Expect = 0.67
 Identities = 23/82 (28%), Positives = 31/82 (37%)
 Frame = +2

Query: 116 AWSAYGNDTLLLLAHVAFDSSSFCTIRPLRATHAGGPSRVAQCARGSSAAREQTCMSNQR 295
           AW    +      AHV    +S C  RP R     G S +AQ A+  S      C  + R
Sbjct: 130 AWGGVWSGEAHPCAHVLRPPASPCPPRPRRGCGDSGSSGMAQRAQAGSNQSRGKCGRDGR 189

Query: 296 IRPSYQPPCPQLGNTARSKQTQ 361
             P   P  P+      S +T+
Sbjct: 190 CPPRSSPGAPEAAERVESAETR 211



EST assemble image


clone accession position
1 HCL011e03_r AV640164 1 318
2 HCL001f02_r AV639596 11 289
3 HCL065a05_r AV643171 11 503
4 HC026d04_r AV633874 16 485
5 MXL020g07_r BP094298 85 523




Chlamydomonas reinhardtii
Kazusa DNA Research Institute