Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001918A_C01 KCC001918A_c01
(768 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_116277.2| collagen, type XXVII, alpha 1 [Homo sapiens] gi... 31 0.092
ref|NP_421643.1| methyl-accepting chemotaxis protein McpI [Caulo... 39 0.12
ref|NP_044327.1| Overlapping protein/movement protein [Kennedya ... 38 0.20
ref|NP_628567.1| conserved hypothetical protein [Streptomyces co... 37 0.45
ref|XP_324019.1| predicted protein [Neurospora crassa] gi|289206... 36 0.59
>ref|NP_116277.2| collagen, type XXVII, alpha 1 [Homo sapiens]
gi|24251209|gb|AAN41263.1| collagen XXVII proalpha 1
chain precursor; preproprotein [Homo sapiens]
Length = 1860
Score = 31.2 bits (69), Expect(2) = 0.092
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +2
Query: 293 RPSSSRSLQLRLSPLC*TRASKLPTKSSTPSRRRPWTSPPPLA-----RTVARSKMPGSI 457
+P+S+R+ + P +S PT ST S R P T PP + RT PGS
Sbjct: 470 KPASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSA 529
Query: 458 SVG 466
G
Sbjct: 530 PTG 532
Score = 26.6 bits (57), Expect(2) = 0.092
Identities = 15/31 (48%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Frame = +1
Query: 145 PSPLSPAARPLPSASVSSRK--VALAPTPAK 231
P P P+ RPLP + SS+K LA T AK
Sbjct: 433 PRPPPPSTRPLPPTTSSSKKPIPTLARTEAK 463
>ref|NP_421643.1| methyl-accepting chemotaxis protein McpI [Caulobacter crescentus
CB15] gi|25400296|pir||G87601 methyl-accepting
chemotaxis protein McpI [imported] - Caulobacter
crescentus gi|13424459|gb|AAK24811.1| methyl-accepting
chemotaxis protein McpI [Caulobacter crescentus CB15]
Length = 534
Score = 38.5 bits (88), Expect = 0.12
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Frame = -1
Query: 531 WALAPVISQRSSHHHILLSSTKPTLIEPGILLLATVLARGGGL-VQGRLLLGVEDFVGSL 355
W + + + HH+ LS P+L+ PG L V+ L V+ L+ V V ++
Sbjct: 113 WMVIAAAAATVAVHHLGLSYLAPSLVFPGSANLGRVIVHAVILIVEAAALIAVAASVNNM 172
Query: 354 LARVQHN--------GDNRSCNERDEDGRSNSVFNWRIHVANRTR----RDHALSR-SRS 214
A G+ R+ N+ ED R + + A R R RD+A++ +
Sbjct: 173 FAIANTARSKAEDAVGEARAANDAAEDARRSEEETRARNAAAREREEAQRDNAIAALGQG 232
Query: 213 QSHLARGD 190
SHLARGD
Sbjct: 233 LSHLARGD 240
>ref|NP_044327.1| Overlapping protein/movement protein [Kennedya yellow mosaic virus]
gi|420739|pir||JQ0532 OP protein - Kennedya yellow
mosaic virus gi|221970|dbj|BAA00531.1| ORF for
overlapping protein [Kennedya yellow mosaic virus]
Length = 753
Score = 37.7 bits (86), Expect = 0.20
Identities = 24/62 (38%), Positives = 33/62 (52%)
Frame = +2
Query: 269 RQLNTLLERPSSSRSLQLRLSPLC*TRASKLPTKSSTPSRRRPWTSPPPLARTVARSKMP 448
R+L++ L+ S SRS LSPLC LP S +PS + P S PP + + +P
Sbjct: 588 RKLHSELDSNSLSRSSSFSLSPLC-----SLP-PSPSPSEQLPTVSAPPTPSPIPATPLP 641
Query: 449 GS 454
GS
Sbjct: 642 GS 643
>ref|NP_628567.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
gi|8894748|emb|CAB95909.1| conserved hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 217
Score = 36.6 bits (83), Expect = 0.45
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 312 RCNCDYPHCVEPGPASCRQNLQRQAEGAPGQAHHPWQEQ 428
RC+C+ P C PG R++ QA G+ A WQ+Q
Sbjct: 50 RCSCEDPACAAPGAHPAREDWAAQATGSATVARRMWQKQ 88
>ref|XP_324019.1| predicted protein [Neurospora crassa] gi|28920608|gb|EAA29970.1|
predicted protein [Neurospora crassa]
Length = 1144
Score = 36.2 bits (82), Expect = 0.59
Identities = 27/88 (30%), Positives = 32/88 (35%), Gaps = 5/88 (5%)
Frame = -3
Query: 691 HVGQVILHVTPSP----RSKDLPFQPSHVPPALAIRYNGPHMLSSLNASRCLPSLPSMGA 524
H G +LH TPSP + P P+H P+ + PH S P P
Sbjct: 25 HHGVSLLHPTPSPTAGQQHTQHPHHPNHPTPSPQYQQTSPHPFSRPQG----PGDPGAAP 80
Query: 523 GACH-QSEKFPPPHPA*QHQTNADRTRH 443
H PPP PA Q D RH
Sbjct: 81 AVSHPHPPPPPPPPPAPSQQGPVDDRRH 108
